| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is xseA [H]
Identifier: 91785012
GI number: 91785012
Start: 4034301
End: 4035680
Strand: Reverse
Name: xseA [H]
Synonym: Bxe_A0768
Alternate gene names: 91785012
Gene position: 4035680-4034301 (Counterclockwise)
Preceding gene: 91785013
Following gene: 91785011
Centisome position: 82.43
GC content: 67.54
Gene sequence:
>1380_bases ATGAATCCCGAAAGCCCATTTTTCTCGTCGGCCGCGCCCGGCGGCGAAGTCGTCGTTCCCGTTTCGGCGCTCAATCGCGC AATCGGCACGATGCTCGAACGCTCGTTTCCGCTCGTCTGGGTTGCCGGCGAAGTATCGAACTTCACGCGCGCCGCGAGCG GCCACTGGTATTTCTCGATCAAGGACGCGCAGGCGCAGATGCGCTGCGTGATGTTCCGCGGGCGGGCGCAATACGCCGAA TTCACGCCGCGCGAAGGCGATCGCATTGAAGTGCGCGCACTGGTGACGATGTACGAGCCGCGTGGCGAGCTGCAACTGAA TGTGGAAGCGGTGCGGCGCACCGGTCAGGGGCGTCTCTATGAAGCGTTCCTGCGGCTGAAAGCGCAGCTCGAAGCCGAGG GTCTCTTTGCCGCCGAACGAAAACGGCCGCTGCCGTCGCATCCGCGAGCGATCGGCATTGTGACGTCGTTGCAGGCCGCG GCATTGCGCGATGTCCTGACCACGCTGTCGCGCCGCGCGCCGCACATTCCGGTGATCGTCTATCCGGCGCCGGTGCAGGG CGCGGGCGTGAGCGGGAAGCTCGCCGCGATGGTCGATGCCGCCAACGCAAGGCGCGAAGTCGACGTGCTGATCGTCTGCC GCGGCGGCGGCTCGATCGAAGACCTGTGGGCGTTCAACGAAGAAGTGCTGGCGCGCGCGATTGCGGAAAGCGCCATTCCG GTGGTGAGCGGCGTGGGTCACGAAACCGATTTCACGATCGCCGATTTTGCCGCCGACGTGCGCGCGCCGACGCCGACCGG CGCGGCCGAACTGGTGAGTCCGCAGCGCGTGCTGCTGTTGCGCGAGCTCGACCACCGCCACGCGACACTCGCACGCGGTT TCGGCCGCATGATGGAGCGGCGTGCGCAGCAACTCGACTGGCTCGCGCGCAGGCTGGTGTCGCCAGCCGAGCGTCTCGCG CGGCAACGCACTCATTTGCAGCAACTGAGTGTGCGGCTCGCGTCGGGGGGCACGCGCCCGGTGCGTGATGCAAGAGCGCG GTTTTCGCTGCTACAGATGCGCTGGCAACGCTGGCGCCCTGATCTCGCCGGGCACCGGGCGAAGCTCGGCAATCTCGCAG GGCGTCTGGACACGGCTTTGTTACGGCAGCATGAACGTCAGACCGCGCGCATCGACACGCTTGCCGCGCGTCTCGAAGTG CTGAGCCCGCAGCGCACGCTGGAGCGTGGCTATGCGGCGGTGCTCGATGCGCAGAGCGGGCGCGCGGTGCGTGCACCGTC GTCGTTGAAGCCGGGGCGGCGCCTCACGGTGCATCTCGCGGAAGGTGCCGCGGACATCGCGCTCGCGGATGTGCAGCCGC GTCTGACCGACGGATTCTGA
Upstream 100 bases:
>100_bases GGCCCCGCCATGTGGACACTTTTAACAATTCGCGCGTCGTGCTGGACGCCAATGGCCGCTCGGTCTATCGTCTGTCCGGC CAGCCACACATATTCCTCGC
Downstream 100 bases:
>100_bases CACTTCGCCGACGGCGTGGGCGCCAGTACTTTTGACGTTTGCAGCGCCTTGGCACACGGTGTGCGAATGCATTAATTACG CTATGCGCGCAGCCTGTTCG
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MNPESPFFSSAAPGGEVVVPVSALNRAIGTMLERSFPLVWVAGEVSNFTRAASGHWYFSIKDAQAQMRCVMFRGRAQYAE FTPREGDRIEVRALVTMYEPRGELQLNVEAVRRTGQGRLYEAFLRLKAQLEAEGLFAAERKRPLPSHPRAIGIVTSLQAA ALRDVLTTLSRRAPHIPVIVYPAPVQGAGVSGKLAAMVDAANARREVDVLIVCRGGGSIEDLWAFNEEVLARAIAESAIP VVSGVGHETDFTIADFAADVRAPTPTGAAELVSPQRVLLLRELDHRHATLARGFGRMMERRAQQLDWLARRLVSPAERLA RQRTHLQQLSVRLASGGTRPVRDARARFSLLQMRWQRWRPDLAGHRAKLGNLAGRLDTALLRQHERQTARIDTLAARLEV LSPQRTLERGYAAVLDAQSGRAVRAPSSLKPGRRLTVHLAEGAADIALADVQPRLTDGF
Sequences:
>Translated_459_residues MNPESPFFSSAAPGGEVVVPVSALNRAIGTMLERSFPLVWVAGEVSNFTRAASGHWYFSIKDAQAQMRCVMFRGRAQYAE FTPREGDRIEVRALVTMYEPRGELQLNVEAVRRTGQGRLYEAFLRLKAQLEAEGLFAAERKRPLPSHPRAIGIVTSLQAA ALRDVLTTLSRRAPHIPVIVYPAPVQGAGVSGKLAAMVDAANARREVDVLIVCRGGGSIEDLWAFNEEVLARAIAESAIP VVSGVGHETDFTIADFAADVRAPTPTGAAELVSPQRVLLLRELDHRHATLARGFGRMMERRAQQLDWLARRLVSPAERLA RQRTHLQQLSVRLASGGTRPVRDARARFSLLQMRWQRWRPDLAGHRAKLGNLAGRLDTALLRQHERQTARIDTLAARLEV LSPQRTLERGYAAVLDAQSGRAVRAPSSLKPGRRLTVHLAEGAADIALADVQPRLTDGF >Mature_459_residues MNPESPFFSSAAPGGEVVVPVSALNRAIGTMLERSFPLVWVAGEVSNFTRAASGHWYFSIKDAQAQMRCVMFRGRAQYAE FTPREGDRIEVRALVTMYEPRGELQLNVEAVRRTGQGRLYEAFLRLKAQLEAEGLFAAERKRPLPSHPRAIGIVTSLQAA ALRDVLTTLSRRAPHIPVIVYPAPVQGAGVSGKLAAMVDAANARREVDVLIVCRGGGSIEDLWAFNEEVLARAIAESAIP VVSGVGHETDFTIADFAADVRAPTPTGAAELVSPQRVLLLRELDHRHATLARGFGRMMERRAQQLDWLARRLVSPAERLA RQRTHLQQLSVRLASGGTRPVRDARARFSLLQMRWQRWRPDLAGHRAKLGNLAGRLDTALLRQHERQTARIDTLAARLEV LSPQRTLERGYAAVLDAQSGRAVRAPSSLKPGRRLTVHLAEGAADIALADVQPRLTDGF
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=440, Percent_Identity=42.5, Blast_Score=340, Evalue=1e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50510; Mature: 50510
Theoretical pI: Translated: 11.33; Mature: 11.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPESPFFSSAAPGGEVVVPVSALNRAIGTMLERSFPLVWVAGEVSNFTRAASGHWYFSI CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEE KDAQAQMRCVMFRGRAQYAEFTPREGDRIEVRALVTMYEPRGELQLNVEAVRRTGQGRLY ECHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHCCCCHHH EAFLRLKAQLEAEGLFAAERKRPLPSHPRAIGIVTSLQAAALRDVLTTLSRRAPHIPVIV HHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEE YPAPVQGAGVSGKLAAMVDAANARREVDVLIVCRGGGSIEDLWAFNEEVLARAIAESAIP ECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCH VVSGVGHETDFTIADFAADVRAPTPTGAAELVSPQRVLLLRELDHRHATLARGFGRMMER HHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RAQQLDWLARRLVSPAERLARQRTHLQQLSVRLASGGTRPVRDARARFSLLQMRWQRWRP HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC DLAGHRAKLGNLAGRLDTALLRQHERQTARIDTLAARLEVLSPQRTLERGYAAVLDAQSG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEECCCC RAVRAPSSLKPGRRLTVHLAEGAADIALADVQPRLTDGF CEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCC >Mature Secondary Structure MNPESPFFSSAAPGGEVVVPVSALNRAIGTMLERSFPLVWVAGEVSNFTRAASGHWYFSI CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEE KDAQAQMRCVMFRGRAQYAEFTPREGDRIEVRALVTMYEPRGELQLNVEAVRRTGQGRLY ECHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHCCCCHHH EAFLRLKAQLEAEGLFAAERKRPLPSHPRAIGIVTSLQAAALRDVLTTLSRRAPHIPVIV HHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEE YPAPVQGAGVSGKLAAMVDAANARREVDVLIVCRGGGSIEDLWAFNEEVLARAIAESAIP ECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCH VVSGVGHETDFTIADFAADVRAPTPTGAAELVSPQRVLLLRELDHRHATLARGFGRMMER HHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RAQQLDWLARRLVSPAERLARQRTHLQQLSVRLASGGTRPVRDARARFSLLQMRWQRWRP HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC DLAGHRAKLGNLAGRLDTALLRQHERQTARIDTLAARLEVLSPQRTLERGYAAVLDAQSG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEECCCC RAVRAPSSLKPGRRLTVHLAEGAADIALADVQPRLTDGF CEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA