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The map label for this gene is sodB [H]

Identifier: 91785011

GI number: 91785011

Start: 4033504

End: 4034082

Strand: Reverse

Name: sodB [H]

Synonym: Bxe_A0769

Alternate gene names: 91785011

Gene position: 4034082-4033504 (Counterclockwise)

Preceding gene: 91785012

Following gene: 91785010

Centisome position: 82.4

GC content: 58.2

Gene sequence:

>579_bases
ATGGAACATACGCTCCCACCGCTGCCGTTCGCGAAAAACGCACTCGTTCCGCACATGTCGGAAGAGACGCTCGAGTTTCA
CTACGGCAAGCATCACCAGACCTATGTGACCAACCTGAACAATCTGATCAAGGGCACGGAGTTCGAGAATCTGTCGCTCG
AGGAAATCGTCAAGAAGGCATCGGGCGGCGTATTCAACAACGCGGCTCAAGTGTGGAATCACACGTTCTTCTGGAACAGC
CTGTCGCCGCAAGGTGGTGGTGCTCCGAGCGGCGCGCTCGCCGACGCGATCAACGCCAGGTGGGGTTCGTTCGACAAGTT
CAAGGAAGAATTCGCCAAGACCGCAGTCGGCACGTTCGGCTCGGGTTGGGCATGGCTGGTGAAGAAGCCCGACGGTTCGC
TCGACCTCGTGTCGACGAGCAACGCCGCCACGCCGCTGACCACCGACGCGAAAGCGCTGCTGACCATCGACGTCTGGGAA
CACGCTTACTACATCGATTACCGCAATGCGCGTCCGAAGTTCGTCGAAGCGTACTGGAACATCGTCAACTGGGAATTCGC
GTCGAAGAATTTCGCGTGA

Upstream 100 bases:

>100_bases
TCCGTTGGTTTGCGGGGTTATTCCAAGTCGCCTACAATCGAGTGCTCTATAGCGTTATCCGCAGACTCCCCCCACAACAG
ATACTGAGAAGGAAAGCACC

Downstream 100 bases:

>100_bases
GTTTGCGGTTGCGCAAAGGCGAACGCGGTCTCCCGCAATAAACTTTTGCAAGCCGTAGCCTGTATGAAAGCCCTCCGCGC
GAGGGCTTTTTTGTGCCCGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MEHTLPPLPFAKNALVPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFENLSLEEIVKKASGGVFNNAAQVWNHTFFWNS
LSPQGGGAPSGALADAINARWGSFDKFKEEFAKTAVGTFGSGWAWLVKKPDGSLDLVSTSNAATPLTTDAKALLTIDVWE
HAYYIDYRNARPKFVEAYWNIVNWEFASKNFA

Sequences:

>Translated_192_residues
MEHTLPPLPFAKNALVPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFENLSLEEIVKKASGGVFNNAAQVWNHTFFWNS
LSPQGGGAPSGALADAINARWGSFDKFKEEFAKTAVGTFGSGWAWLVKKPDGSLDLVSTSNAATPLTTDAKALLTIDVWE
HAYYIDYRNARPKFVEAYWNIVNWEFASKNFA
>Mature_192_residues
MEHTLPPLPFAKNALVPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFENLSLEEIVKKASGGVFNNAAQVWNHTFFWNS
LSPQGGGAPSGALADAINARWGSFDKFKEEFAKTAVGTFGSGWAWLVKKPDGSLDLVSTSNAATPLTTDAKALLTIDVWE
HAYYIDYRNARPKFVEAYWNIVNWEFASKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=42.0792079207921, Blast_Score=162, Evalue=1e-40,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=42.0792079207921, Blast_Score=162, Evalue=1e-40,
Organism=Homo sapiens, GI67782309, Length=193, Percent_Identity=36.2694300518135, Blast_Score=121, Evalue=3e-28,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=67.7083333333333, Blast_Score=283, Evalue=6e-78,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=43.6893203883495, Blast_Score=165, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=39.3034825870647, Blast_Score=144, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=39, Blast_Score=135, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=210, Percent_Identity=38.5714285714286, Blast_Score=129, Evalue=4e-31,
Organism=Drosophila melanogaster, GI17136812, Length=195, Percent_Identity=42.0512820512821, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21456; Mature: 21456

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHTLPPLPFAKNALVPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFENLSLEEIVKKA
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SGGVFNNAAQVWNHTFFWNSLSPQGGGAPSGALADAINARWGSFDKFKEEFAKTAVGTFG
CCCCCCCHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKPDGSLDLVSTSNAATPLTTDAKALLTIDVWEHAYYIDYRNARPKFVEAYWN
CCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCHHHHHHHH
IVNWEFASKNFA
HHCEEECCCCCC
>Mature Secondary Structure
MEHTLPPLPFAKNALVPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFENLSLEEIVKKA
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SGGVFNNAAQVWNHTFFWNSLSPQGGGAPSGALADAINARWGSFDKFKEEFAKTAVGTFG
CCCCCCCHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKPDGSLDLVSTSNAATPLTTDAKALLTIDVWEHAYYIDYRNARPKFVEAYWN
CCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCHHHHHHHH
IVNWEFASKNFA
HHCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]