| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is gsiD [H]
Identifier: 91784942
GI number: 91784942
Start: 3952426
End: 3953331
Strand: Reverse
Name: gsiD [H]
Synonym: Bxe_A0838
Alternate gene names: 91784942
Gene position: 3953331-3952426 (Counterclockwise)
Preceding gene: 91784943
Following gene: 91784941
Centisome position: 80.75
GC content: 63.36
Gene sequence:
>906_bases ATGAGCACGACCGCCACCGAGCCGAATGCGGCCAGCACCGTGAAAGCCGAATCCGCGATCCGCACACCGTGGAGCGAGTT CTGGCGCAAATTCCGCAAGCAGCATGTGGCGCTTGCCGCCGGCATTTTCGTGCTGCTGCTGATCGCGCTTGCAATTGCGG CACCGCATATCGTGCCGTACGACCCGGAGAATTTCTTCGACTACGACGCGTTGAACGCGGGGCCGTCCGCCGCGCACTGG TTCGGCGTGGACTCGCTGGGCCGCGATATTTTCAGCCGTATTCTGGCGGGCTCGCGTATTTCGCTCGAAGCGGGCTTTCT GTCCGTTGCGATCGGCGCGGTGATCGGCACGTTCTTCGGCTTGCTGGCCGGCTATTACGAAGGCTGGTGGGATCGCATCA CGATGCGCGTCGCCGACGTGCTGTTCGCCTTTCCCGGCATTCTGCTGGCCATCGGCGTGGTGGCGATTCTCGGCAACGGC ATGATCAACGTGATCTGCGCGGTGGCGATCTTCAGCATTCCGGCGTTCGCGCGGCTCGTGCGCGGCAATACGCTGATGCT CAAGCAGCTCACGTATATCGAAGCGGCACGCAGCATCGGCGCGTCGGATTGGACCATCATCGTGCGGCACATTCTGCCGG GAGCGATCTCTTCGGTGGTGGTGTACTTCACGATGCGTATCGGTACGTCGATCATCACGGCGGCAAGCCTGTCGTTTCTC GGCCTCGGCGCGCAGCCGCCGACGCCCGAGTGGGGCGCGATGCTCAACGAAGCGCGCGCCGACATGGTGACTGCGCCGCA TATCGCGCTGTTTCCGAGTCTGGCGATTTTCCTGACGGTGCTGGCGTTCAACCTGCTCGGCGACGGTTTGCGCGATGCGC TCGATCCGAAGCTCGACCGGCCATGA
Upstream 100 bases:
>100_bases GAAGTGCTGCTGTTCTCGCTGGAATTCATCATCATCAACCTGGTCGTGGACGTGCTGTACGCCGTGATCAACCCGACCAT CCGTTTCAAGTGAGGCCCGC
Downstream 100 bases:
>100_bases ATTCGCCAGAGATGCGCCGCGCGCCGCATATCGGCACATTGCCGGCAGGTCCGCGCGGCACGATTGCCGATGTACACGGC GTGACAGTCGGACATTGCAC
Product: ABC peptide transporter, inner membrane subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MSTTATEPNAASTVKAESAIRTPWSEFWRKFRKQHVALAAGIFVLLLIALAIAAPHIVPYDPENFFDYDALNAGPSAAHW FGVDSLGRDIFSRILAGSRISLEAGFLSVAIGAVIGTFFGLLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNG MINVICAVAIFSIPAFARLVRGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGAISSVVVYFTMRIGTSIITAASLSFL GLGAQPPTPEWGAMLNEARADMVTAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDRP
Sequences:
>Translated_301_residues MSTTATEPNAASTVKAESAIRTPWSEFWRKFRKQHVALAAGIFVLLLIALAIAAPHIVPYDPENFFDYDALNAGPSAAHW FGVDSLGRDIFSRILAGSRISLEAGFLSVAIGAVIGTFFGLLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNG MINVICAVAIFSIPAFARLVRGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGAISSVVVYFTMRIGTSIITAASLSFL GLGAQPPTPEWGAMLNEARADMVTAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDRP >Mature_300_residues STTATEPNAASTVKAESAIRTPWSEFWRKFRKQHVALAAGIFVLLLIALAIAAPHIVPYDPENFFDYDALNAGPSAAHWF GVDSLGRDIFSRILAGSRISLEAGFLSVAIGAVIGTFFGLLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNGM INVICAVAIFSIPAFARLVRGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGAISSVVVYFTMRIGTSIITAASLSFLG LGAQPPTPEWGAMLNEARADMVTAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDRP
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1173
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=291, Percent_Identity=75.9450171821306, Blast_Score=453, Evalue=1e-129, Organism=Escherichia coli, GI1787760, Length=286, Percent_Identity=39.5104895104895, Blast_Score=219, Evalue=1e-58, Organism=Escherichia coli, GI1789964, Length=285, Percent_Identity=41.7543859649123, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=41.9087136929461, Blast_Score=181, Evalue=6e-47, Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=36.4238410596026, Blast_Score=175, Evalue=4e-45, Organism=Escherichia coli, GI1787549, Length=272, Percent_Identity=33.0882352941176, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1788505, Length=236, Percent_Identity=32.2033898305085, Blast_Score=119, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 32334; Mature: 32203
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTATEPNAASTVKAESAIRTPWSEFWRKFRKQHVALAAGIFVLLLIALAIAAPHIVPY CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DPENFFDYDALNAGPSAAHWFGVDSLGRDIFSRILAGSRISLEAGFLSVAIGAVIGTFFG CCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNGMINVICAVAIFSIPAFARLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH RGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGAISSVVVYFTMRIGTSIITAASLSFL CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGAQPPTPEWGAMLNEARADMVTAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDR CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC P C >Mature Secondary Structure STTATEPNAASTVKAESAIRTPWSEFWRKFRKQHVALAAGIFVLLLIALAIAAPHIVPY CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DPENFFDYDALNAGPSAAHWFGVDSLGRDIFSRILAGSRISLEAGFLSVAIGAVIGTFFG CCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNGMINVICAVAIFSIPAFARLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH RGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGAISSVVVYFTMRIGTSIITAASLSFL CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGAQPPTPEWGAMLNEARADMVTAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDR CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC P C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA