Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 91784786

GI number: 91784786

Start: 3775393

End: 3776127

Strand: Reverse

Name: rimM [H]

Synonym: Bxe_A1007

Alternate gene names: 91784786

Gene position: 3776127-3775393 (Counterclockwise)

Preceding gene: 91784787

Following gene: 91784785

Centisome position: 77.13

GC content: 62.04

Gene sequence:

>735_bases
ATGTCCGAGCGTGATTCCGGTAGTTCAGGTCCCGTGAAGGCAAAAGCTGCGGCCCCGCGCGCAAAGACGTCTGGTCAGGC
GCCGTTCGGTGCCTTCGTCCGCAAGCCGGTCGAAAAAACCGAAGGCAAGGCGAAAGCCAATGCGGCAAACGCCGGTTCCG
GTGCAACAGAAATGCGCATGGAAACGGCAGAAAGCTGGCCGGTCGATGCGGTCGAGGTCGGCGCAATCGTCGACGCTTAC
GGCCTCAAAGGCTGGGTCAAGGTAGCCGCTCATGCGGATGCCGGCCACGGCGGCGACGCTTTGCTGAGCGCGAAGCGCTG
GTGGCTGCTCAAAGGCCAGGAGCGCAAATCGGCGCCGTCGTTGCAGGCGAAAACGCATAGCGACAGTGTGGTGGCCCATC
TGGGCGGCGTCACTGACCGCGATGTGGCGCTGGCACTGCGCGGCTCCCGCGTCTATATCAGCCGCAGCGAGTTTCCGGCT
CTCGGAGCCGACGAATTCTACTGGGTCGACCTGCTCGGCCTGGACGTGGTGAACGTTGCCGGAGTCAGTCTCGGCAAGGT
TGCAGACATGATCGACAACGGTGCGCACTCGGTGTTGCGTATCGAATATCCGGCTACCGACAAAAGCGGCAAGCCGGTCA
CCGGTGAGCGTTTGATCCCGTTCGTCGGCGTCTTTGTCAAAACAGTGGACCAGGCGGCGAAGCAGATCACCGTCGACTGG
GAAGCTGATTACTAA

Upstream 100 bases:

>100_bases
GCCGGCGGCTCGTACGGTTTGCGTAAGCGGCCCGGCGAGCAATCCGATGCGCGAGTTGTTTTGCTGAAGCAGGCGTCGAA
GCTGGCAGCGAGGTTCTCTT

Downstream 100 bases:

>100_bases
ATAATTCGCTGAATGGAGAGAGCGATGCAGTTCGATGTCGTCACGCTCTTTCCTGACATGTTTCGTGCGCTGACCGACTG
GGGTATCACCAGCCGTGCGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSERDSGSSGPVKAKAAAPRAKTSGQAPFGAFVRKPVEKTEGKAKANAANAGSGATEMRMETAESWPVDAVEVGAIVDAY
GLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPSLQAKTHSDSVVAHLGGVTDRDVALALRGSRVYISRSEFPA
LGADEFYWVDLLGLDVVNVAGVSLGKVADMIDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKQITVDW
EADY

Sequences:

>Translated_244_residues
MSERDSGSSGPVKAKAAAPRAKTSGQAPFGAFVRKPVEKTEGKAKANAANAGSGATEMRMETAESWPVDAVEVGAIVDAY
GLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPSLQAKTHSDSVVAHLGGVTDRDVALALRGSRVYISRSEFPA
LGADEFYWVDLLGLDVVNVAGVSLGKVADMIDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKQITVDW
EADY
>Mature_243_residues
SERDSGSSGPVKAKAAAPRAKTSGQAPFGAFVRKPVEKTEGKAKANAANAGSGATEMRMETAESWPVDAVEVGAIVDAYG
LKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPSLQAKTHSDSVVAHLGGVTDRDVALALRGSRVYISRSEFPAL
GADEFYWVDLLGLDVVNVAGVSLGKVADMIDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKQITVDWE
ADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=31.8435754189944, Blast_Score=107, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 25730; Mature: 25599

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERDSGSSGPVKAKAAAPRAKTSGQAPFGAFVRKPVEKTEGKAKANAANAGSGATEMRM
CCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCCCCCCCCCHHHHH
ETAESWPVDAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPS
HHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCEEEEEECCCCCCCCC
LQAKTHSDSVVAHLGGVTDRDVALALRGSRVYISRSEFPALGADEFYWVDLLGLDVVNVA
CEECCCCCHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCCEEEEEEECCHHHHHC
GVSLGKVADMIDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKQITVDW
CCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEE
EADY
CCCC
>Mature Secondary Structure 
SERDSGSSGPVKAKAAAPRAKTSGQAPFGAFVRKPVEKTEGKAKANAANAGSGATEMRM
CCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCCCCCCCCCHHHHH
ETAESWPVDAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPS
HHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCEEEEEECCCCCCCCC
LQAKTHSDSVVAHLGGVTDRDVALALRGSRVYISRSEFPALGADEFYWVDLLGLDVVNVA
CEECCCCCHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCCEEEEEEECCHHHHHC
GVSLGKVADMIDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKQITVDW
CCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEE
EADY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA