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The map label for this gene is orn

Identifier: 91784777

GI number: 91784777

Start: 3767025

End: 3767648

Strand: Reverse

Name: orn

Synonym: Bxe_A1016

Alternate gene names: 91784777

Gene position: 3767648-3767025 (Counterclockwise)

Preceding gene: 91784781

Following gene: 91784774

Centisome position: 76.96

GC content: 62.5

Gene sequence:

>624_bases
ATGACTGACATCCTCGCATCCACCGAACAGCCGCCGCTCGTGCGCAGCGACATGAATCTCGTCTGGCTGGACATGGAAAT
GACCGGGCTCGAGCCCGACTCCGACCGCATCATCGAAATCGCGGTGGTGGTGACGAACTCGACGCTCGACAGAATGGTAG
AAGGTCCGGTGCTGGCGATTCATCAGAGCGACGAGACGCTCGCCGGAATGGATCAGTGGAATCAGAACACGCATGGCCGC
TCGGGCCTGATCGACCGCGTGAAGGCCTCCACGGTGAGCGAGGCCGACGCCACCGAACAGATCCGCGATTTCCTGAGCGT
CTACGTGCCGCCGGGCAAATCGCCGATGTGCGGCAACTCGATCTGCCAGGACCGCCGCTTCATGGCGCGCTGGATGCCGG
AGCTGGAGCGCTTCTTCCATTACCGCAATCTCGACGTCAGCACGCTCAAGGAACTGTGCCGCCGCTGGCAGCCGGCCATC
TACAAAGGCTTCCAGAAGCGCGCGATGCACACGGCGCTCGCCGACATCCACGAGTCGATCGACGAACTGAAGTACTACCG
CGAGCACTTCCTGATCCCGTCGGCGCCGGACGCCGCCAATGGTGCGGAAAAAGCCGCGGAATAA

Upstream 100 bases:

>100_bases
CAAACCGGCTTGCACCAGCTTAATCCAATCTCATACGAACAATCGCCGCGGCAGGCGGGCTTGCAGAGCAGCCGTTTGTC
CGGCCACCAGGGTTGCCTTC

Downstream 100 bases:

>100_bases
GAAAACTTAAGCCGGCCGGGGCGCGCGCTGTGCGTTCTTCGGCCGGAACGCCTTCACCACGTTGGCGTTGGTTTCCACAT
AGGGCCCGCCGATCAGGTCG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTDILASTEQPPLVRSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTHGR
SGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYREHFLIPSAPDAANGAEKAAE

Sequences:

>Translated_207_residues
MTDILASTEQPPLVRSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTHGR
SGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYREHFLIPSAPDAANGAEKAAE
>Mature_206_residues
TDILASTEQPPLVRSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTHGRS
GLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELKYYREHFLIPSAPDAANGAEKAAE

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=45.6647398843931, Blast_Score=167, Evalue=7e-42,
Organism=Escherichia coli, GI87082382, Length=173, Percent_Identity=60.6936416184971, Blast_Score=233, Evalue=7e-63,
Organism=Caenorhabditis elegans, GI17557752, Length=176, Percent_Identity=46.0227272727273, Blast_Score=169, Evalue=7e-43,
Organism=Saccharomyces cerevisiae, GI6323088, Length=205, Percent_Identity=35.609756097561, Blast_Score=118, Evalue=6e-28,
Organism=Drosophila melanogaster, GI21355135, Length=176, Percent_Identity=40.9090909090909, Blast_Score=155, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ORN_BURXL (Q13VF8)

Other databases:

- EMBL:   CP000270
- RefSeq:   YP_559983.1
- ProteinModelPortal:   Q13VF8
- SMR:   Q13VF8
- GeneID:   4003976
- GenomeReviews:   CP000270_GR
- KEGG:   bxe:Bxe_A1016
- HOGENOM:   HBG448545
- OMA:   WNKGTHG
- ProtClustDB:   PRK05359
- GO:   GO:0005737
- HAMAP:   MF_00045
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337
- SMART:   SM00479

Pfam domain/function: PF00929 Exonuc_X-T; SSF53098 RNaseH_fold

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23541; Mature: 23410

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: ACT_SITE 141-141

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDILASTEQPPLVRSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAI
CCCCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHCCCEEEE
HQSDETLAGMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNS
ECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHH
ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYREHFLIPSAPDAANGAEKAAE
HHHHHHHHHCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
TDILASTEQPPLVRSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAI
CCCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHCCCEEEE
HQSDETLAGMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNS
ECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHH
ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYREHFLIPSAPDAANGAEKAAE
HHHHHHHHHCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA