| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is thrS [H]
Identifier: 91784428
GI number: 91784428
Start: 3400817
End: 3402724
Strand: Reverse
Name: thrS [H]
Synonym: Bxe_A1371
Alternate gene names: 91784428
Gene position: 3402724-3400817 (Counterclockwise)
Preceding gene: 91784429
Following gene: 91784427
Centisome position: 69.5
GC content: 60.22
Gene sequence:
>1908_bases ATGGTTTCGATACGTCTGCCTGACGGTTCTGTTCGACAGTACGAGCATCCGGTGACCGTCGCCGAAGTGGCCGCCTCGAT TGGCCCCGGCCTCGCGAAGGCCGCGCTCGGCGGCAAGATCGACGGTGAGTTGGTCGATACGTCCGCGCTGATCGATCACG ACGTGGCGCTTGCCATCGTCACGGAGAAAGACGCAGACGGTCTCGATATCATCCGGCACTCCACGGCGCACTTGCTCGCG TACGCGGTGAAGGATCTGTACCCGGAAGCGCAGGTCACGATCGGCCCGGTCATCGACAACGGCTTTTACTACGACTTCGC ATATAACCGTCCGTTCACGCCGGAAGATCTCGAGAAGATCGAAAAGCGCATGCAGGAACTCGCGAAGAAAGACGAGCCGG TTTCGCGCCGCGTGGTGTCGCGCGACGAAGCGGTGGACTACTTCAAGAGCATCGGCGAAAAGTACAAGGCCGAGATCATC GAATCGATTCCCGCCACCGACGAGATCAAGCTGTACTCGCATGGCGGCTTCACGGATCTGTGCCGCGGCCCGCACGTGCC GTCTACCGGCAAGCTGAAAGTCTTCAAGCTGATGAAGGTCGCGGGTGCCTACTGGCGCGGCGATTCGAAGAACGAACAAT TGCAGCGCATCTACGGTACGGCCTGGACGAAGAAGGAAGACCAGGAAGCGTACCTGCACATGCTCGAAGAGGCGGAAAAG CGCGACCACCGCAAGCTCGGCAAGCAACTCGATCTGTTCCACATGCAGGACGAGTCGCCGGGCATGGTGTTCTGGCATCC GCGTGGCTGGACGTTGTGGCAGCAGGTCGAGCAGTACATGCGCCGTCGCGTGAACGACGCGGGGTACCTCGAAATCAAGA CGCCGATGATCATGGACCGCTCGCTCTGGGAAGCGTCGGGCCACTGGCAGAACTATCGTGAAAACATGTTCACGACGGAA TCGGAAAAGCGCGACTACGCGATCAAGCCGATGAACTGCCCGGGTCACGTGCAGGTGTTCAACCACGGTCTGCGCTCGTA TCGCGATCTGCCGCTGCGTTACGCCGAATTCGGCTCGTGCCATCGCAACGAATCGTCGGGCGCGCTGCATGGACTGATGC GCGTGCGCGGGTTCGTGCAGGACGACGCGCACATTTTCTGTACCGAAGACCAGTTCATCAGCGAATCGATCGCGTTCAAC ACGCTGGCGATGAGCGTCTACAAGGATTTCGGCTTCGACCATGTCGAGATCAAGCTGTCGCTGCGCCCGGACGCGCGCGC CGGCACGGACGAGACGTGGGATCGCGCGGAGCAGGGGTTGCGCGAGGCGCTGACGGCCTGCGGTGTGACGTGGGAAGAAC TGCCGGGCGAGGGCGCGTTCTACGGCCCGAAGGTCGAATACCACATCAAGGATGCGCTTGGCCGCTCGTGGCAATGCGGC ACGTTGCAGCTCGATATGGTGTTGCCGGAGCGCCTCGGCGCGGAATACGTCGCCGAAGACAATAGCCGCCGCCGGCCGAT CATGCTGCACCGGGCAATCGTCGGATCAATGGAGCGTTTCCTTGGCATTCTGATCGAGCACCACGCTGGTGCAATGCCTG CGTGGCTCGCGCCAATGCAGGTCGTTGTGATGAATATCGCGGAAAGTCAGACCGAATATGCGCAGTCTTTAGCCCAATCG TTGCAAAAACAAGGGGTTAGAGTAGCGGCTGATTTGCGCAACGAGAAGATTAGCTATAAAATACGGGAGCACACGCTGGA GAAGGTGCCGTACCTGCTTGTGGTCGGCGACAAAGAGCGTGAAGCCCAAACGGTAGCCGTGCGTGCCCGTGGTGGTGTCG ATCTGGGTGTGATGCCCCTCGACACTTTCATTGAGCGTCTGCGCCAGGATGTGCAGTCGTTCAACTGA
Upstream 100 bases:
>100_bases CAGGAAATGTGAATGCGGCCCCTCGAAAGCGGGGCCGCATTTTTTTTAGCTTGTTTGATGGATGTATGTGCCGCCGCCGG TCGGCACCACGGAGAACGCA
Downstream 100 bases:
>100_bases GCCACTTGGCAGCCCGGCTCGTTTTTTTAATTTTTAGAGGAAACGTAACATCGCTACTGATAAGTCTGCGCACCGCATCA ACGGTGAAATTACGGCACCC
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MVSIRLPDGSVRQYEHPVTVAEVAASIGPGLAKAALGGKIDGELVDTSALIDHDVALAIVTEKDADGLDIIRHSTAHLLA YAVKDLYPEAQVTIGPVIDNGFYYDFAYNRPFTPEDLEKIEKRMQELAKKDEPVSRRVVSRDEAVDYFKSIGEKYKAEII ESIPATDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEQLQRIYGTAWTKKEDQEAYLHMLEEAEK RDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTE SEKRDYAIKPMNCPGHVQVFNHGLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFN TLAMSVYKDFGFDHVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPKVEYHIKDALGRSWQCG TLQLDMVLPERLGAEYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIAESQTEYAQSLAQS LQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGVDLGVMPLDTFIERLRQDVQSFN
Sequences:
>Translated_635_residues MVSIRLPDGSVRQYEHPVTVAEVAASIGPGLAKAALGGKIDGELVDTSALIDHDVALAIVTEKDADGLDIIRHSTAHLLA YAVKDLYPEAQVTIGPVIDNGFYYDFAYNRPFTPEDLEKIEKRMQELAKKDEPVSRRVVSRDEAVDYFKSIGEKYKAEII ESIPATDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEQLQRIYGTAWTKKEDQEAYLHMLEEAEK RDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTE SEKRDYAIKPMNCPGHVQVFNHGLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFN TLAMSVYKDFGFDHVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPKVEYHIKDALGRSWQCG TLQLDMVLPERLGAEYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIAESQTEYAQSLAQS LQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGVDLGVMPLDTFIERLRQDVQSFN >Mature_635_residues MVSIRLPDGSVRQYEHPVTVAEVAASIGPGLAKAALGGKIDGELVDTSALIDHDVALAIVTEKDADGLDIIRHSTAHLLA YAVKDLYPEAQVTIGPVIDNGFYYDFAYNRPFTPEDLEKIEKRMQELAKKDEPVSRRVVSRDEAVDYFKSIGEKYKAEII ESIPATDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEQLQRIYGTAWTKKEDQEAYLHMLEEAEK RDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNDAGYLEIKTPMIMDRSLWEASGHWQNYRENMFTTE SEKRDYAIKPMNCPGHVQVFNHGLRSYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFN TLAMSVYKDFGFDHVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPKVEYHIKDALGRSWQCG TLQLDMVLPERLGAEYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIAESQTEYAQSLAQS LQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGGVDLGVMPLDTFIERLRQDVQSFN
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38570111, Length=633, Percent_Identity=39.4944707740916, Blast_Score=476, Evalue=1e-134, Organism=Homo sapiens, GI38202255, Length=632, Percent_Identity=38.6075949367089, Blast_Score=453, Evalue=1e-127, Organism=Homo sapiens, GI20070344, Length=649, Percent_Identity=37.1340523882897, Blast_Score=409, Evalue=1e-114, Organism=Escherichia coli, GI1788013, Length=634, Percent_Identity=58.9905362776025, Blast_Score=795, Evalue=0.0, Organism=Escherichia coli, GI1786392, Length=155, Percent_Identity=27.0967741935484, Blast_Score=75, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71984184, Length=633, Percent_Identity=39.0205371248025, Blast_Score=479, Evalue=1e-135, Organism=Caenorhabditis elegans, GI71984192, Length=633, Percent_Identity=39.0205371248025, Blast_Score=479, Evalue=1e-135, Organism=Saccharomyces cerevisiae, GI6322112, Length=629, Percent_Identity=38.4737678855326, Blast_Score=453, Evalue=1e-128, Organism=Saccharomyces cerevisiae, GI6322654, Length=397, Percent_Identity=40.0503778337531, Blast_Score=301, Evalue=2e-82, Organism=Drosophila melanogaster, GI24583842, Length=631, Percent_Identity=39.4611727416799, Blast_Score=480, Evalue=1e-135, Organism=Drosophila melanogaster, GI28574141, Length=631, Percent_Identity=39.4611727416799, Blast_Score=480, Evalue=1e-135, Organism=Drosophila melanogaster, GI24583839, Length=631, Percent_Identity=39.4611727416799, Blast_Score=480, Evalue=1e-135,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 72213; Mature: 72213
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSIRLPDGSVRQYEHPVTVAEVAASIGPGLAKAALGGKIDGELVDTSALIDHDVALAIV CEEEECCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCEECHHHHHCCCEEEEEE TEKDADGLDIIRHSTAHLLAYAVKDLYPEAQVTIGPVIDNGFYYDFAYNRPFTPEDLEKI ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHH EKRMQELAKKDEPVSRRVVSRDEAVDYFKSIGEKYKAEIIESIPATDEIKLYSHGGFTDL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHH CRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEQLQRIYGTAWTKKEDQEAYLHMLEEAEK HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNDAGYLEIKTPMIMDR HHHHHHCCCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHCH SLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGHVQVFNHGLRSYRDLPLRYAEFGSC HHHHCCCCHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC HRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNTLAMSVYKDFGFDHVEIKLS CCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE LRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPKVEYHIKDALGRSWQCG ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEEHHHCCCCCCCC TLQLDMVLPERLGAEYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQ CEEEEEECHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH VVVMNIAESQTEYAQSLAQSLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKER HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCEEEHHHHHHHHHCCEEEEECCCCC EAQTVAVRARGGVDLGVMPLDTFIERLRQDVQSFN CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MVSIRLPDGSVRQYEHPVTVAEVAASIGPGLAKAALGGKIDGELVDTSALIDHDVALAIV CEEEECCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCEECHHHHHCCCEEEEEE TEKDADGLDIIRHSTAHLLAYAVKDLYPEAQVTIGPVIDNGFYYDFAYNRPFTPEDLEKI ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHH EKRMQELAKKDEPVSRRVVSRDEAVDYFKSIGEKYKAEIIESIPATDEIKLYSHGGFTDL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHH CRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEQLQRIYGTAWTKKEDQEAYLHMLEEAEK HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RDHRKLGKQLDLFHMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNDAGYLEIKTPMIMDR HHHHHHCCCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHCH SLWEASGHWQNYRENMFTTESEKRDYAIKPMNCPGHVQVFNHGLRSYRDLPLRYAEFGSC HHHHCCCCHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC HRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNTLAMSVYKDFGFDHVEIKLS CCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE LRPDARAGTDETWDRAEQGLREALTACGVTWEELPGEGAFYGPKVEYHIKDALGRSWQCG ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEEHHHCCCCCCCC TLQLDMVLPERLGAEYVAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQ CEEEEEECHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH VVVMNIAESQTEYAQSLAQSLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKER HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCEEEHHHHHHHHHCCEEEEECCCCC EAQTVAVRARGGVDLGVMPLDTFIERLRQDVQSFN CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA