Definition Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession NC_007951
Length 4,895,836

Click here to switch to the map view.

The map label for this gene is pheT [H]

Identifier: 91784423

GI number: 91784423

Start: 3395633

End: 3398068

Strand: Reverse

Name: pheT [H]

Synonym: Bxe_A1376

Alternate gene names: 91784423

Gene position: 3398068-3395633 (Counterclockwise)

Preceding gene: 161621316

Following gene: 91784422

Centisome position: 69.41

GC content: 61.74

Gene sequence:

>2436_bases
ATGCAATTCCCGGAATCTTGGCTGAGAACCTTTGTCGATCCGCAACTGACGACCGACGAACTGTCGCACGCGTTGACGAT
GGCGGGTCTCGAAGTCGAAGACCTGCGGCCGGCCGCGCCGCCGACCTCGAAGATCGTCGTCGGCCAGGTGCTGGAAGTCG
TCAAGCACCCGGACGCGGACAAGCTCAACGTGTGTCAGGTCGACGCCGGCACGGGCGCGACACTGAACATCGTGTGCGGC
GCGCCGAATGTGGCGCCCGGCATCAAGGTGCCGGTCGCGCTGGTCGGCGCGCAACTGCCGCCGGCCGAAGAAGGCGGCGC
TCCGTTCGCGATCAGGCTCTCGAAGCTGCGCGGCGTGGAAAGCCAGGGCATGCTGTGCTCGGCACGCGAACTCAAGCTCT
CGGAAGATCATAGCGGCCTGATGATCCTGCCGGAAGATACGCCGATCGGCCAGGATATCCGCGAAACGCTCAATCTCGAC
GACACCGTGTTCGAGATCAAACTGACGCCGAACAAGGCGGACTGCCTGTCGGTGTTCGGCGTGGCGCGCGAGACTTCGGC
GATTACCGGCGCGCCGCTGCGTCCGCTCGAAATCAAGCCGGTTGAAGTCAAACTCAACGAGACGCTGCCCGTCAGGATCT
CGGCGCCGGATCTATGCGGCCGCTTCTCGGGTCGCGTGATTCGCGGCGTGAATGCGCGCGCAAAATCGCCGCAATGGATG
GTGGAGCGTCTCGAACGTTCGGGCCAGCGCAGCATTTCCGCGCTCGTCGATATCTCGAACTATGTGATGCTCGAGCTGGG
CCGCCCGTCGCACGTGTTCGATCTCGACAAGATCCACGGCGGCATGGACGTGCGCTGGGGCCGCAAGGGCGAAACGCTCA
AGCTGCTGAACGGCAACACCGTCGAACTCGATGAAACGGTCGGCGTGATCGCCGACGAGCAGCATATCGAAAGTCTCGCG
GGCATCATGGGCGGCGACAGCACGGCCGTCACGCTCGACACGGCCAACATCTATCTGGAAGCCGCTTTCTGGTGGCCCGA
TAGCATCCGCGGCCGCTCGCGCAAATACAATTTCTCGACCGACGCCGGCCATCGCTTCGAACGCGGTGTGGACTACGCGA
CCACGGTCGAGCATATCGAACGCATCACGCAACTGATCCTCGACATCTGCGGCGGCGAAGCCGGCCCGGTCGACGATCAG
ATCGTCAACGTGCCGAAGCGCGAACCCGTGACCATGCGGGTTTCGCGCGCGAATCGCATCATCGGCATCGAGATCGGCGC
GGATGAGATCGCGCAGATTTTCACGCGCCTCGGCCTGTCGTTCGAACGCGGCGACGATACGTTCTCGGTCATGCCGCCGT
CGTATCGTTTCGATATCGAAATCGAAGAAGACCTGATCGAAGAAGTCGCGCGTATTTACGGCTTCGAGAAAATTCCGGCG
CGTCCGCCGGTCGCGACCAGCGAAATGCGCGCGACCAACGAAACGCAGCGTTCGATCCACGTGATCCGTCACGCGCTCGC
CGCTCGCGACTACGCGGAAACGGTGAACTTCAGTTTCGTCGACGCCGAGTGGGAGCAGGACTTCGCCGGCAACGACAAAC
CGGTACGTCTGCTGAATCCGATTGCAAGCCAGTTGTCGGTGATGCGCACCACGCTTTTCGGCAGCCTGATTCACGTGCTG
CGCACGAATCTGAACCGCCGCGCGGCGGATCGCGTGCGCGTGTTCGAGGCCGGCCGCGTGTTCCTGCACGATCCGTCGAT
CAAGGCTGGCGAGCTGACGGTCGAAGGCTTCGCGCAGCCGAAGATGATCGGCGGCCTCGCGTACGGTCCCGCGCTCGACG
AGCAGTGGGGCGCGGCAACGCGCACGGTCGACTACTTCGACGTGAAGGGCGATCTGGAAGCCGTGCTGGCGCCGGCGGTC
GCGCGTTTCGTCAAAGCGGAACATCCGGCATTGCATCCGGGACGCAGCGCGCGTATTGAACTGAATGGCCGCGCAGTTGG
CTGGATTGGTGAATTGCATCCGCGCTGGATGCAAAAATATGATTTGCCGCATGCGCCGATTCTGTTTGAAATCGAGGCGG
AAGCATTAATGCAGCGCGTATTGCCTACTCCGGCGGAAGTGTCTAAATTCCCACCGGTGCGTCGTGATATTGCCGTGGTC
GTCGACCAGAAAATCGAGGTTCAGGCACTGCTCGACGAGCTTCAGAAAGCCCAGTCCGAACCCGCGTGCAAGGCCGTTCA
GAAGGTTGCGCTTTTCGACGAATTCCGTCCAAAATCAAACACTTCCGGCGGTCTGGCTGCTCATGAGAAAAGCCTTGCGT
TCCGTGTAACCTTGCAAGATACTGGTGGAACCCTTCAGGACGAAACGGTCGAACTGGCTATTCAAACTCTGGTGGCACGT
CTGGCTCGAGTATATGGCGCACGGCTGCGCGGATAA

Upstream 100 bases:

>100_bases
CGTCCCCGGTAGTGTCCGATGATTCGCACCGCATGAACATCGCGCCGAGTCGAAGCACTGCCGGACATGGACCTAACCTG
ATCAGAACGTACACAGAACC

Downstream 100 bases:

>100_bases
CCCGCATTTAACAATTGCACGGCTGTTTCCGCATCTTTTGTTTTCTGCTTGGCGCGCCATTTGATAGATATGAATGAAAT
GAACTCGAGTGATTTCGAAG

Product: phenylalanyl-tRNA synthetase subunit beta

Products: NA

Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]

Number of amino acids: Translated: 811; Mature: 811

Protein sequence:

>811_residues
MQFPESWLRTFVDPQLTTDELSHALTMAGLEVEDLRPAAPPTSKIVVGQVLEVVKHPDADKLNVCQVDAGTGATLNIVCG
APNVAPGIKVPVALVGAQLPPAEEGGAPFAIRLSKLRGVESQGMLCSARELKLSEDHSGLMILPEDTPIGQDIRETLNLD
DTVFEIKLTPNKADCLSVFGVARETSAITGAPLRPLEIKPVEVKLNETLPVRISAPDLCGRFSGRVIRGVNARAKSPQWM
VERLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGMDVRWGRKGETLKLLNGNTVELDETVGVIADEQHIESLA
GIMGGDSTAVTLDTANIYLEAAFWWPDSIRGRSRKYNFSTDAGHRFERGVDYATTVEHIERITQLILDICGGEAGPVDDQ
IVNVPKREPVTMRVSRANRIIGIEIGADEIAQIFTRLGLSFERGDDTFSVMPPSYRFDIEIEEDLIEEVARIYGFEKIPA
RPPVATSEMRATNETQRSIHVIRHALAARDYAETVNFSFVDAEWEQDFAGNDKPVRLLNPIASQLSVMRTTLFGSLIHVL
RTNLNRRAADRVRVFEAGRVFLHDPSIKAGELTVEGFAQPKMIGGLAYGPALDEQWGAATRTVDYFDVKGDLEAVLAPAV
ARFVKAEHPALHPGRSARIELNGRAVGWIGELHPRWMQKYDLPHAPILFEIEAEALMQRVLPTPAEVSKFPPVRRDIAVV
VDQKIEVQALLDELQKAQSEPACKAVQKVALFDEFRPKSNTSGGLAAHEKSLAFRVTLQDTGGTLQDETVELAIQTLVAR
LARVYGARLRG

Sequences:

>Translated_811_residues
MQFPESWLRTFVDPQLTTDELSHALTMAGLEVEDLRPAAPPTSKIVVGQVLEVVKHPDADKLNVCQVDAGTGATLNIVCG
APNVAPGIKVPVALVGAQLPPAEEGGAPFAIRLSKLRGVESQGMLCSARELKLSEDHSGLMILPEDTPIGQDIRETLNLD
DTVFEIKLTPNKADCLSVFGVARETSAITGAPLRPLEIKPVEVKLNETLPVRISAPDLCGRFSGRVIRGVNARAKSPQWM
VERLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGMDVRWGRKGETLKLLNGNTVELDETVGVIADEQHIESLA
GIMGGDSTAVTLDTANIYLEAAFWWPDSIRGRSRKYNFSTDAGHRFERGVDYATTVEHIERITQLILDICGGEAGPVDDQ
IVNVPKREPVTMRVSRANRIIGIEIGADEIAQIFTRLGLSFERGDDTFSVMPPSYRFDIEIEEDLIEEVARIYGFEKIPA
RPPVATSEMRATNETQRSIHVIRHALAARDYAETVNFSFVDAEWEQDFAGNDKPVRLLNPIASQLSVMRTTLFGSLIHVL
RTNLNRRAADRVRVFEAGRVFLHDPSIKAGELTVEGFAQPKMIGGLAYGPALDEQWGAATRTVDYFDVKGDLEAVLAPAV
ARFVKAEHPALHPGRSARIELNGRAVGWIGELHPRWMQKYDLPHAPILFEIEAEALMQRVLPTPAEVSKFPPVRRDIAVV
VDQKIEVQALLDELQKAQSEPACKAVQKVALFDEFRPKSNTSGGLAAHEKSLAFRVTLQDTGGTLQDETVELAIQTLVAR
LARVYGARLRG
>Mature_811_residues
MQFPESWLRTFVDPQLTTDELSHALTMAGLEVEDLRPAAPPTSKIVVGQVLEVVKHPDADKLNVCQVDAGTGATLNIVCG
APNVAPGIKVPVALVGAQLPPAEEGGAPFAIRLSKLRGVESQGMLCSARELKLSEDHSGLMILPEDTPIGQDIRETLNLD
DTVFEIKLTPNKADCLSVFGVARETSAITGAPLRPLEIKPVEVKLNETLPVRISAPDLCGRFSGRVIRGVNARAKSPQWM
VERLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGMDVRWGRKGETLKLLNGNTVELDETVGVIADEQHIESLA
GIMGGDSTAVTLDTANIYLEAAFWWPDSIRGRSRKYNFSTDAGHRFERGVDYATTVEHIERITQLILDICGGEAGPVDDQ
IVNVPKREPVTMRVSRANRIIGIEIGADEIAQIFTRLGLSFERGDDTFSVMPPSYRFDIEIEEDLIEEVARIYGFEKIPA
RPPVATSEMRATNETQRSIHVIRHALAARDYAETVNFSFVDAEWEQDFAGNDKPVRLLNPIASQLSVMRTTLFGSLIHVL
RTNLNRRAADRVRVFEAGRVFLHDPSIKAGELTVEGFAQPKMIGGLAYGPALDEQWGAATRTVDYFDVKGDLEAVLAPAV
ARFVKAEHPALHPGRSARIELNGRAVGWIGELHPRWMQKYDLPHAPILFEIEAEALMQRVLPTPAEVSKFPPVRRDIAVV
VDQKIEVQALLDELQKAQSEPACKAVQKVALFDEFRPKSNTSGGLAAHEKSLAFRVTLQDTGGTLQDETVELAIQTLVAR
LARVYGARLRG

Specific function: Unknown

COG id: COG0072

COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 tRNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI124028525, Length=390, Percent_Identity=23.8461538461538, Blast_Score=83, Evalue=1e-15,
Organism=Escherichia coli, GI1788006, Length=817, Percent_Identity=43.3292533659731, Blast_Score=639, Evalue=0.0,
Organism=Drosophila melanogaster, GI21355211, Length=397, Percent_Identity=25.6926952141058, Blast_Score=89, Evalue=2e-17,

Paralogues:

None

Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005146
- InterPro:   IPR005147
- InterPro:   IPR009061
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004532
- InterPro:   IPR020825
- InterPro:   IPR005121
- InterPro:   IPR002547 [H]

Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]

EC number: =6.1.1.20 [H]

Molecular weight: Translated: 89152; Mature: 89152

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFPESWLRTFVDPQLTTDELSHALTMAGLEVEDLRPAAPPTSKIVVGQVLEVVKHPDAD
CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
KLNVCQVDAGTGATLNIVCGAPNVAPGIKVPVALVGAQLPPAEEGGAPFAIRLSKLRGVE
CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHCCCC
SQGMLCSARELKLSEDHSGLMILPEDTPIGQDIRETLNLDDTVFEIKLTPNKADCLSVFG
CCCCEEEHHHCEECCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
VARETSAITGAPLRPLEIKPVEVKLNETLPVRISAPDLCGRFSGRVIRGVNARAKSPQWM
HHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEECCHHHHHHCCCCEEECCCCCCCCHHHH
VERLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGMDVRWGRKGETLKLLNGNT
HHHHHHCCHHHHHHHHCCCCEEEEEECCCCCEEEHHHHCCCCEEEECCCCCEEEEECCCE
VELDETVGVIADEQHIESLAGIMGGDSTAVTLDTANIYLEAAFWWPDSIRGRSRKYNFST
EEECCCCCCEECHHHHHHHHHHCCCCCCEEEEEECEEEEEEEEECCCCCCCCCCEECCCC
DAGHRFERGVDYATTVEHIERITQLILDICGGEAGPVDDQIVNVPKREPVTMRVSRANRI
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEEEEEECCCEE
IGIEIGADEIAQIFTRLGLSFERGDDTFSVMPPSYRFDIEIEEDLIEEVARIYGFEKIPA
EEEEECHHHHHHHHHHHCCEEECCCCEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCC
RPPVATSEMRATNETQRSIHVIRHALAARDYAETVNFSFVDAEWEQDFAGNDKPVRLLNP
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCCHHHHHH
IASQLSVMRTTLFGSLIHVLRTNLNRRAADRVRVFEAGRVFLHDPSIKAGELTVEGFAQP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCEEEEECCCCCCCCEEECCCCCC
KMIGGLAYGPALDEQWGAATRTVDYFDVKGDLEAVLAPAVARFVKAEHPALHPGRSARIE
HHHCCEECCCCCCCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
LNGRAVGWIGELHPRWMQKYDLPHAPILFEIEAEALMQRVLPTPAEVSKFPPVRRDIAVV
ECCEEEEEHHHCCHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCHHHHCCCCCHHCEEEE
VDQKIEVQALLDELQKAQSEPACKAVQKVALFDEFRPKSNTSGGLAAHEKSLAFRVTLQD
ECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEEEEC
TGGTLQDETVELAIQTLVARLARVYGARLRG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQFPESWLRTFVDPQLTTDELSHALTMAGLEVEDLRPAAPPTSKIVVGQVLEVVKHPDAD
CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
KLNVCQVDAGTGATLNIVCGAPNVAPGIKVPVALVGAQLPPAEEGGAPFAIRLSKLRGVE
CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHCCCC
SQGMLCSARELKLSEDHSGLMILPEDTPIGQDIRETLNLDDTVFEIKLTPNKADCLSVFG
CCCCEEEHHHCEECCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
VARETSAITGAPLRPLEIKPVEVKLNETLPVRISAPDLCGRFSGRVIRGVNARAKSPQWM
HHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEECCHHHHHHCCCCEEECCCCCCCCHHHH
VERLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGMDVRWGRKGETLKLLNGNT
HHHHHHCCHHHHHHHHCCCCEEEEEECCCCCEEEHHHHCCCCEEEECCCCCEEEEECCCE
VELDETVGVIADEQHIESLAGIMGGDSTAVTLDTANIYLEAAFWWPDSIRGRSRKYNFST
EEECCCCCCEECHHHHHHHHHHCCCCCCEEEEEECEEEEEEEEECCCCCCCCCCEECCCC
DAGHRFERGVDYATTVEHIERITQLILDICGGEAGPVDDQIVNVPKREPVTMRVSRANRI
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEEEEEECCCEE
IGIEIGADEIAQIFTRLGLSFERGDDTFSVMPPSYRFDIEIEEDLIEEVARIYGFEKIPA
EEEEECHHHHHHHHHHHCCEEECCCCEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCC
RPPVATSEMRATNETQRSIHVIRHALAARDYAETVNFSFVDAEWEQDFAGNDKPVRLLNP
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCCHHHHHH
IASQLSVMRTTLFGSLIHVLRTNLNRRAADRVRVFEAGRVFLHDPSIKAGELTVEGFAQP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCEEEEECCCCCCCCEEECCCCCC
KMIGGLAYGPALDEQWGAATRTVDYFDVKGDLEAVLAPAVARFVKAEHPALHPGRSARIE
HHHCCEECCCCCCCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
LNGRAVGWIGELHPRWMQKYDLPHAPILFEIEAEALMQRVLPTPAEVSKFPPVRRDIAVV
ECCEEEEEHHHCCHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCHHHHCCCCCHHCEEEE
VDQKIEVQALLDELQKAQSEPACKAVQKVALFDEFRPKSNTSGGLAAHEKSLAFRVTLQD
ECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEEEEC
TGGTLQDETVELAIQTLVARLARVYGARLRG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA