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The map label for this gene is ydcR [H]

Identifier: 91784313

GI number: 91784313

Start: 3272718

End: 3274151

Strand: Reverse

Name: ydcR [H]

Synonym: Bxe_A1487

Alternate gene names: 91784313

Gene position: 3274151-3272718 (Counterclockwise)

Preceding gene: 91784315

Following gene: 91784312

Centisome position: 66.88

GC content: 66.25

Gene sequence:

>1434_bases
TTGAACCTGTACGAAAAACTCGCCGACGAAATAACGCAAGCCGTGCGGCGCGGCGTGTTCGCGGCCGGCGAGCGGATTCC
GTCCGTGCGGCAGGCGAGCCAGCAGCACGGCGTCAGTATCAAGACGGTGCTGCACGCGTATGCGTTGCTGGAAAGCCGTG
GGATCGTCGAAACCCGCCCGCAGTCGGGCTATTTCGTGCGCGATGCCGCGGCGAGGTCGGTGGCGCTCGAAGAGCCGCGG
CCGGGCCGCCTGCCCGCGCCCGCGACGCAGCCGGTGGCCGCCGCGGTGGATGTGAGCCGCCTCGTGCTGTCCACCTTGCG
CAGCATCCGCGCGCACGACGCCGTGCCGTTCGGCTCGCCGTATCCGGATCCCTCGCTGTTTCCGTGGCGGCGCATCAACC
AGTACGCGAACGCGATCGCGCGGCGCCACGCAAGCTGGAACCTGATCGACGACCTGCCGCCCGGCAACCCCGAGCTGATC
CGGCAGATCGCCCGGCGCTACGCGGAGAACGGCGTGCCGGTCGATCCCGGCGAAATCATCATCACGCTCGGCGCGACCGA
GGCGATCAACCTGAGCCTGCAGGCGGTGGCCAAACCCGGCGACACGGTGGCCGTCGAATCGCCCACCTATTACGCGATGC
TGCACGCCATCGAGCGTCTGGGCATGCGCGCGATCGAGGTGGCGACGCATCCGGCCGACGGTATCGATGTCGAGGCGCTC
GCGCGGGTGATCGCCGAACAGAAGATCGCGGCCTGCATGGTGATGCCGAACTTCCAGAATCCGCTCGGCTTCTGCATGCC
CGACGCGCGCAAGCAGCAACTGGTGGAACTGCTCGCCGCGCACGAGATTCCCGTGATCGAGAACGACGTGTATCAGGAGC
TGTACTTCGGCGAAACGCGGCCTTCGACCTTGAAGAGTTTCGACACCAAAGGGCTGGTGCTGCATTGCGCGTCGTTTTCG
AAGAGCCTGACCGCGTCGTACCGGATCGGCTGGGCGCTGCCGGGGCGCTATCGCGCGCAGGTCGAGAAGCTGAAGTTTCT
CAATACGCTGACCACGCCGTCGGTGCCGCAGGTCGCGGTCGCCGACTACTTGCGCCAGGACGGCTACGACCGGCATCTGC
GGCACGTGCGCAAGGTCTACCGGCAGCAGGCGAGCATCATGATGGCGATGGTGCAGCGGTTTTTCCCCGAGGGCACGCGC
ATGTCGACGCCGCAAGGCGGCTACGTGCTCTGGGTGGAGTTGCCCGAACGCGTCGATTCCATGCGGCTGTATCAGGCGGC
GCTCGCGCGCAGCATCACGGTCGGGCCGGGCATGATGTTTTCGACGCGCAATGATTTTCGGCATTTCATCCGGCTCAACT
ACAGCTATCCGTGGACGGCGCAGACCGAGGCGGCCTTGAAGACGCTCGGCGAACTGGTCACGCAGATGGCATGA

Upstream 100 bases:

>100_bases
AGAGCGCAGCATACAGAAAATTGGAAAGGGGAGGGATACAGTTGCCTGATTTTTGTCATAGACTGGCGTTCCAGCCCACG
CCTTTGTTTGATCCAGGCCC

Downstream 100 bases:

>100_bases
CAACGAGGAGACACTCGCTATGGAAGACGACGAACTCGATCCGGTGCTGGTCGCCGTGCTGGAGCAGCTATGGCGCGCGC
ATCGGGAAACGCCGGGCGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MNLYEKLADEITQAVRRGVFAAGERIPSVRQASQQHGVSIKTVLHAYALLESRGIVETRPQSGYFVRDAAARSVALEEPR
PGRLPAPATQPVAAAVDVSRLVLSTLRSIRAHDAVPFGSPYPDPSLFPWRRINQYANAIARRHASWNLIDDLPPGNPELI
RQIARRYAENGVPVDPGEIIITLGATEAINLSLQAVAKPGDTVAVESPTYYAMLHAIERLGMRAIEVATHPADGIDVEAL
ARVIAEQKIAACMVMPNFQNPLGFCMPDARKQQLVELLAAHEIPVIENDVYQELYFGETRPSTLKSFDTKGLVLHCASFS
KSLTASYRIGWALPGRYRAQVEKLKFLNTLTTPSVPQVAVADYLRQDGYDRHLRHVRKVYRQQASIMMAMVQRFFPEGTR
MSTPQGGYVLWVELPERVDSMRLYQAALARSITVGPGMMFSTRNDFRHFIRLNYSYPWTAQTEAALKTLGELVTQMA

Sequences:

>Translated_477_residues
MNLYEKLADEITQAVRRGVFAAGERIPSVRQASQQHGVSIKTVLHAYALLESRGIVETRPQSGYFVRDAAARSVALEEPR
PGRLPAPATQPVAAAVDVSRLVLSTLRSIRAHDAVPFGSPYPDPSLFPWRRINQYANAIARRHASWNLIDDLPPGNPELI
RQIARRYAENGVPVDPGEIIITLGATEAINLSLQAVAKPGDTVAVESPTYYAMLHAIERLGMRAIEVATHPADGIDVEAL
ARVIAEQKIAACMVMPNFQNPLGFCMPDARKQQLVELLAAHEIPVIENDVYQELYFGETRPSTLKSFDTKGLVLHCASFS
KSLTASYRIGWALPGRYRAQVEKLKFLNTLTTPSVPQVAVADYLRQDGYDRHLRHVRKVYRQQASIMMAMVQRFFPEGTR
MSTPQGGYVLWVELPERVDSMRLYQAALARSITVGPGMMFSTRNDFRHFIRLNYSYPWTAQTEAALKTLGELVTQMA
>Mature_477_residues
MNLYEKLADEITQAVRRGVFAAGERIPSVRQASQQHGVSIKTVLHAYALLESRGIVETRPQSGYFVRDAAARSVALEEPR
PGRLPAPATQPVAAAVDVSRLVLSTLRSIRAHDAVPFGSPYPDPSLFPWRRINQYANAIARRHASWNLIDDLPPGNPELI
RQIARRYAENGVPVDPGEIIITLGATEAINLSLQAVAKPGDTVAVESPTYYAMLHAIERLGMRAIEVATHPADGIDVEAL
ARVIAEQKIAACMVMPNFQNPLGFCMPDARKQQLVELLAAHEIPVIENDVYQELYFGETRPSTLKSFDTKGLVLHCASFS
KSLTASYRIGWALPGRYRAQVEKLKFLNTLTTPSVPQVAVADYLRQDGYDRHLRHVRKVYRQQASIMMAMVQRFFPEGTR
MSTPQGGYVLWVELPERVDSMRLYQAALARSITVGPGMMFSTRNDFRHFIRLNYSYPWTAQTEAALKTLGELVTQMA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=23.9747634069401, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=23.9747634069401, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI4507369, Length=267, Percent_Identity=23.2209737827715, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1787710, Length=477, Percent_Identity=40.6708595387841, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1790797, Length=480, Percent_Identity=37.0833333333333, Blast_Score=317, Evalue=1e-87,
Organism=Escherichia coli, GI1788722, Length=302, Percent_Identity=24.1721854304636, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786816, Length=220, Percent_Identity=25.9090909090909, Blast_Score=63, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322401, Length=301, Percent_Identity=23.9202657807309, Blast_Score=71, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6321000, Length=326, Percent_Identity=22.0858895705521, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21356535, Length=352, Percent_Identity=23.2954545454545, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53166; Mature: 53166

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLYEKLADEITQAVRRGVFAAGERIPSVRQASQQHGVSIKTVLHAYALLESRGIVETRP
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEECC
QSGYFVRDAAARSVALEEPRPGRLPAPATQPVAAAVDVSRLVLSTLRSIRAHDAVPFGSP
CCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
YPDPSLFPWRRINQYANAIARRHASWNLIDDLPPGNPELIRQIARRYAENGVPVDPGEII
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE
ITLGATEAINLSLQAVAKPGDTVAVESPTYYAMLHAIERLGMRAIEVATHPADGIDVEAL
EEECCCHHHCEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCEEEHCCCCCCCCCHHHH
ARVIAEQKIAACMVMPNFQNPLGFCMPDARKQQLVELLAAHEIPVIENDVYQELYFGETR
HHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PSTLKSFDTKGLVLHCASFSKSLTASYRIGWALPGRYRAQVEKLKFLNTLTTPSVPQVAV
CHHHHHCCCCCCEEEEHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHH
ADYLRQDGYDRHLRHVRKVYRQQASIMMAMVQRFFPEGTRMSTPQGGYVLWVELPERVDS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHH
MRLYQAALARSITVGPGMMFSTRNDFRHFIRLNYSYPWTAQTEAALKTLGELVTQMA
HHHHHHHHHHHCCCCCCCEECCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLYEKLADEITQAVRRGVFAAGERIPSVRQASQQHGVSIKTVLHAYALLESRGIVETRP
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEECC
QSGYFVRDAAARSVALEEPRPGRLPAPATQPVAAAVDVSRLVLSTLRSIRAHDAVPFGSP
CCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
YPDPSLFPWRRINQYANAIARRHASWNLIDDLPPGNPELIRQIARRYAENGVPVDPGEII
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE
ITLGATEAINLSLQAVAKPGDTVAVESPTYYAMLHAIERLGMRAIEVATHPADGIDVEAL
EEECCCHHHCEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCEEEHCCCCCCCCCHHHH
ARVIAEQKIAACMVMPNFQNPLGFCMPDARKQQLVELLAAHEIPVIENDVYQELYFGETR
HHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PSTLKSFDTKGLVLHCASFSKSLTASYRIGWALPGRYRAQVEKLKFLNTLTTPSVPQVAV
CHHHHHCCCCCCEEEEHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHH
ADYLRQDGYDRHLRHVRKVYRQQASIMMAMVQRFFPEGTRMSTPQGGYVLWVELPERVDS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHH
MRLYQAALARSITVGPGMMFSTRNDFRHFIRLNYSYPWTAQTEAALKTLGELVTQMA
HHHHHHHHHHHCCCCCCCEECCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]