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The map label for this gene is ykfC [H]

Identifier: 91784212

GI number: 91784212

Start: 3157378

End: 3158745

Strand: Reverse

Name: ykfC [H]

Synonym: Bxe_A1589

Alternate gene names: 91784212

Gene position: 3158745-3157378 (Counterclockwise)

Preceding gene: 91784213

Following gene: 91784210

Centisome position: 64.52

GC content: 64.62

Gene sequence:

>1368_bases
ATGTCGATGCGACAGGCAATGCGTCAGATGCCCGTGCAAACGGGGCGAGCGGGAGTCACGCGCGGTGAAGCTGCGCCTAT
GCCTGTGAGCGACGAAGCCTGCTGCCCGCGACATGAATCCGGGGACGCGGGGTCGGCGCTGCTGGCAGCGGCGCTGACGA
GAGAGAACCTGAAGCGGGCGTTCAAACGGGTCCGGGCCAACAAGGGAGCCGCTGGCGTGGACGGTCTGGACATTGGCCAG
ACGGCGCGTCATCTGGTGACGGCGTGGCCTGTGATCCGTGAACAACTGCTGAAGGGGACGTACCGGCCTGATCCGGTACG
GCGGGTGACGATTCCGAAACCGGATGGAGGCGAGCGCGAGCTGGGCATCCCGACGGTGACGGACCGGCTGATCCAGCAGG
CGTTGCTGCAAGTCCTGCAGCCGATTCTGGACCCCACCTTCAGCGAGCACAGCTACGGTTTCCGGCCCGGGCGGCGGGCG
CACGACGCGGTGCTTGCCGCGCAGTCGTACGTGCAGTCGGGTCGGCGGATCGTGGTGGACGTTGATCTGGAGAAGTTCTT
CGACCGGGTCAACCACGACATCCTGATCGACCGCTTGAAGAGACGCATAGACGACGCCGGAGTAATCCGGCTGGTCCGGA
CATATCTGAACAGCGGCATCATGGATGACGGCGTGGTGCAGCAGCGGGATCAGGGCACGCCGCAAGGCGGGCCGCTATCC
CCGCTGTTGGCCAACGTACTGCTTGATGAGGTGGACAAGGAACTGGAGCGGCGGGGCCACTGCTTCGCACGCTACGCCGA
TGACGCGAATGTCTATGTTCGCAGCCGTCGTGCGGGCGAGCGGGTAATGGCCTTGCTGCGACGCCTGTATGGCCGTCTGC
GCCTGAAGGTCAACGAGACCAAAAGCGCGGTGGCGAGTGTGTTTGGTCGCAAGTTTCTGGGCTACAGCCTGTGGGTGGCT
GCGGGTGGGATGGTCAAGCGCAAGGTGGCGGCCAAACCGCTGCTGGCGTTCAAACACCGCATTCGTGAACTGACCCGTCG
CTCTGGCGGGCGCAGCATGAAGGAGGTGGTGGAACGGCTACGGTCCTATGTTCAGGGCTGGAAGGCATACTTCCGGTTGG
CGCAAACACCGAAGGTCTGGCGCGAGCTGGAAGAGTGGATGCGCCATCGGCTGCGTGCGATCCAGCTCAAACATTGGCGC
CGTGGTCCCGCGATCTACCGGGAGCTGCGCGGGTTGGGTGCGCCGGAGCCTGTGGCAAAACAGGTGGCTGCGAACAGCCG
CCGCTGGTGGCGCAACAGTGACCGGTTGCTCAAGAGCGTGCTGACCATCGCATACTTCGACCGGCTGGGCGTGCCCCGAC
TCTCCTAA

Upstream 100 bases:

>100_bases
GCCGGAGCGAGAAGTCAGCAGAGGCCGTAGTAGTTACAGGACAGGCCGGGGAGGCTGAAGCTGGTGACGAAGGGCCGAAC
GGGAAGGAGCGTCCAGCGTC

Downstream 100 bases:

>100_bases
CCTCAACTTCCCGAACCGCCCGGTGCGGACCCGCATGCCGGGTGGTGTGGCAGGGGTACGGTCTCATGGCCGTCCCCTAT
GCCGATCAAGGCGAGGCGTT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSMRQAMRQMPVQTGRAGVTRGEAAPMPVSDEACCPRHESGDAGSALLAAALTRENLKRAFKRVRANKGAAGVDGLDIGQ
TARHLVTAWPVIREQLLKGTYRPDPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPILDPTFSEHSYGFRPGRRA
HDAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLKRRIDDAGVIRLVRTYLNSGIMDDGVVQQRDQGTPQGGPLS
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNETKSAVASVFGRKFLGYSLWVA
AGGMVKRKVAAKPLLAFKHRIRELTRRSGGRSMKEVVERLRSYVQGWKAYFRLAQTPKVWRELEEWMRHRLRAIQLKHWR
RGPAIYRELRGLGAPEPVAKQVAANSRRWWRNSDRLLKSVLTIAYFDRLGVPRLS

Sequences:

>Translated_455_residues
MSMRQAMRQMPVQTGRAGVTRGEAAPMPVSDEACCPRHESGDAGSALLAAALTRENLKRAFKRVRANKGAAGVDGLDIGQ
TARHLVTAWPVIREQLLKGTYRPDPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPILDPTFSEHSYGFRPGRRA
HDAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLKRRIDDAGVIRLVRTYLNSGIMDDGVVQQRDQGTPQGGPLS
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNETKSAVASVFGRKFLGYSLWVA
AGGMVKRKVAAKPLLAFKHRIRELTRRSGGRSMKEVVERLRSYVQGWKAYFRLAQTPKVWRELEEWMRHRLRAIQLKHWR
RGPAIYRELRGLGAPEPVAKQVAANSRRWWRNSDRLLKSVLTIAYFDRLGVPRLS
>Mature_454_residues
SMRQAMRQMPVQTGRAGVTRGEAAPMPVSDEACCPRHESGDAGSALLAAALTRENLKRAFKRVRANKGAAGVDGLDIGQT
ARHLVTAWPVIREQLLKGTYRPDPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPILDPTFSEHSYGFRPGRRAH
DAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLKRRIDDAGVIRLVRTYLNSGIMDDGVVQQRDQGTPQGGPLSP
LLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNETKSAVASVFGRKFLGYSLWVAA
GGMVKRKVAAKPLLAFKHRIRELTRRSGGRSMKEVVERLRSYVQGWKAYFRLAQTPKVWRELEEWMRHRLRAIQLKHWRR
GPAIYRELRGLGAPEPVAKQVAANSRRWWRNSDRLLKSVLTIAYFDRLGVPRLS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=207, Percent_Identity=30.4347826086957, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=166, Percent_Identity=36.144578313253, Blast_Score=117, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 51624; Mature: 51492

Theoretical pI: Translated: 11.41; Mature: 11.41

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRQAMRQMPVQTGRAGVTRGEAAPMPVSDEACCPRHESGDAGSALLAAALTRENLKRA
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FKRVRANKGAAGVDGLDIGQTARHLVTAWPVIREQLLKGTYRPDPVRRVTIPKPDGGERE
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC
LGIPTVTDRLIQQALLQVLQPILDPTFSEHSYGFRPGRRAHDAVLAAQSYVQSGRRIVVD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VDLEKFFDRVNHDILIDRLKRRIDDAGVIRLVRTYLNSGIMDDGVVQQRDQGTPQGGPLS
ECHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHH
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNET
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHEEEECHH
KSAVASVFGRKFLGYSLWVAAGGMVKRKVAAKPLLAFKHRIRELTRRSGGRSMKEVVERL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RSYVQGWKAYFRLAQTPKVWRELEEWMRHRLRAIQLKHWRRGPAIYRELRGLGAPEPVAK
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH
QVAANSRRWWRNSDRLLKSVLTIAYFDRLGVPRLS
HHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SMRQAMRQMPVQTGRAGVTRGEAAPMPVSDEACCPRHESGDAGSALLAAALTRENLKRA
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FKRVRANKGAAGVDGLDIGQTARHLVTAWPVIREQLLKGTYRPDPVRRVTIPKPDGGERE
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC
LGIPTVTDRLIQQALLQVLQPILDPTFSEHSYGFRPGRRAHDAVLAAQSYVQSGRRIVVD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VDLEKFFDRVNHDILIDRLKRRIDDAGVIRLVRTYLNSGIMDDGVVQQRDQGTPQGGPLS
ECHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHH
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNET
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHEEEECHH
KSAVASVFGRKFLGYSLWVAAGGMVKRKVAAKPLLAFKHRIRELTRRSGGRSMKEVVERL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RSYVQGWKAYFRLAQTPKVWRELEEWMRHRLRAIQLKHWRRGPAIYRELRGLGAPEPVAK
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH
QVAANSRRWWRNSDRLLKSVLTIAYFDRLGVPRLS
HHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]