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The map label for this gene is rnhB [H]

Identifier: 91784105

GI number: 91784105

Start: 3031865

End: 3032611

Strand: Reverse

Name: rnhB [H]

Synonym: Bxe_A1696

Alternate gene names: 91784105

Gene position: 3032611-3031865 (Counterclockwise)

Preceding gene: 91784106

Following gene: 91784104

Centisome position: 61.94

GC content: 65.73

Gene sequence:

>747_bases
GTGACCAGCGCACGCACGCCTCGCCGCAAGACCGTTGCAGGAGCGTCGGCGCAGCAGGTCGGCCTGAACTTCGAGACGCC
GGACGACATTGTCTGCGGCGTCGACGAAGCGGGGCGCGGGCCGCTCGCCGGCCCGGTCGTGGCCGCGGCGGTGATTTTCG
ATCCGGCCAAGCCGATGATTCGCGGCCTCGACGATTCCAAAGTATTGACCGCGAAAAAGCGCGACGAACTGTACGACAAG
ATCGTCGACCGGGCGCTGGCTTACTGCATCGCTTCGGCATCGGTCGAAGAAATCGATTCGCTCAATATCCTGCATGCCAC
CATGCTGGCCATGAAGCGCGCCGTGGAAGGTCTGTCCGTCGTGCCGACGCTCGTGAAGATCGACGGCAATCGCTGTCCGA
CGCTGAGCGTTCGCAGCGAGGCGGTGATCGGCGGCGACGCGCTCGTCAAAAGCATTTCGGCCGCCTCGATTCTTGCCAAG
GTCACGCGCGACCGGATGCTGCTCGAATTGCACCAGGCGCATCCCGTCTACGGCTTCAATGCGCATGCCGGTTACGGCAC
GCCGCAGCATCTTGCGGCGCTGCGCGAACACGGGCCTTGCGAGCACCATCGGCGCTCGTTTGCGCCGGTGCGTGAAGCGC
ATCTGCGGTTGGGCACGGGCGTGCCGCTGCCGGCCGGCAATGTGATCGTCGTCTCCGAAGTGATGCTCGACGACGACGCC
TTCGGCGAGCGCAGCGGCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGGAAATCTTCACGGAGATGCATCACGTGCTGAAGCAGAACACCGCGCAGCGCGCGGCGGAAGTCGTGGCGAGCGTCATC
GAAAAGCGGAAGGCGCGGCC

Downstream 100 bases:

>100_bases
GCATCACGCGAGCGCTTCATGAGCGCCGCGTGTCATCAACCTCTTCCTCATTCTCACTGTCTTCGCTGCCTGTGAAAGCC
ATCACCTCGCGGGACAATCC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTSARTPRRKTVAGASAQQVGLNFETPDDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDK
IVDRALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPTLSVRSEAVIGGDALVKSISAASILAK
VTRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAPVREAHLRLGTGVPLPAGNVIVVSEVMLDDDA
FGERSGAA

Sequences:

>Translated_248_residues
MTSARTPRRKTVAGASAQQVGLNFETPDDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDK
IVDRALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPTLSVRSEAVIGGDALVKSISAASILAK
VTRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAPVREAHLRLGTGVPLPAGNVIVVSEVMLDDDA
FGERSGAA
>Mature_247_residues
TSARTPRRKTVAGASAQQVGLNFETPDDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDKI
VDRALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPTLSVRSEAVIGGDALVKSISAASILAKV
TRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAPVREAHLRLGTGVPLPAGNVIVVSEVMLDDDAF
GERSGAA

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=193, Percent_Identity=56.9948186528497, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 26312; Mature: 26180

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSARTPRRKTVAGASAQQVGLNFETPDDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMI
CCCCCCCCHHHHCCCCHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCHHHH
RGLDDSKVLTAKKRDELYDKIVDRALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSV
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHH
VPTLVKIDGNRCPTLSVRSEAVIGGDALVKSISAASILAKVTRDRMLLELHQAHPVYGFN
CCEEEEECCCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AHAGYGTPQHLAALREHGPCEHHRRSFAPVREAHLRLGTGVPLPAGNVIVVSEVMLDDDA
CCCCCCCHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCC
FGERSGAA
CCCCCCCC
>Mature Secondary Structure 
TSARTPRRKTVAGASAQQVGLNFETPDDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMI
CCCCCCCHHHHCCCCHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCHHHH
RGLDDSKVLTAKKRDELYDKIVDRALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSV
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHH
VPTLVKIDGNRCPTLSVRSEAVIGGDALVKSISAASILAKVTRDRMLLELHQAHPVYGFN
CCEEEEECCCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AHAGYGTPQHLAALREHGPCEHHRRSFAPVREAHLRLGTGVPLPAGNVIVVSEVMLDDDA
CCCCCCCHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCC
FGERSGAA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA