| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91784046
Identifier: 91784046
GI number: 91784046
Start: 2969538
End: 2970692
Strand: Reverse
Name: 91784046
Synonym: Bxe_A1757
Alternate gene names: NA
Gene position: 2970692-2969538 (Counterclockwise)
Preceding gene: 91784047
Following gene: 91784045
Centisome position: 60.68
GC content: 66.58
Gene sequence:
>1155_bases ATGAGCGGCCTCTTCACCGCTGTCGGCGGCACCCTCGAAAACGGCATGTCCACCTACGTCACGAACGTCTCGTCGGCGCT GTCCGGCGCGCTTGTGCCTGTTGTCACTACTGGCGTCACGATCTGGGTGCTCGCCTATGGTCTCGCGGTCGTGCGCGGTG AAGCACACGAAGCCGTGCCGGCGTTCGCGTGGCGCGGACTTAAGGTGGCGATCACGCTCGCGTTCGCGCTGAGCTCTGGC ATCTACCAGCAGCAGGTCGTGACCGCTGTTGATGGTGCGACGTCCGGGCTAGCGCAGACGATCCAGAACGCGGCGAACAC GACTGGCGGCGGCAATCCGGGGTGCGGCTCAGTCAACGGCAGCAGCGCGACGGGTCAAGGAGCTGCAACGAGCATCTACC AGACGCTCGACTGTTACGACCAGCAGATCGATCTCGTGATGGACGCCTACTTCGACAAGGCGACGCATGAGGGATTCAGT CCGAGCGGCCTCGCCGCCGCCATTGGCGACTTTACGTGCGGCCTGATAGCCGCGCTCGGCGGCTCGATCTTCCTGATCGT GCTCGCGTTCGAGGTCGTGATGGCGCGGATGCTGCTCGATCTCGTGCTCGGCCTAGGTCCCGTTTTCATCGCCTGCGCGG CGTTTTCACCGACGGCCCGCTTCTTCGAGGCGTGGACCGCGAAGGTCGTCAATTACGCGCTGCTGCAGGTGCTCGTTGCT GCCTTCCTCGGCATGGCGCTCACGGCGTTTTCTTCCGATCTCACCACGCTTCATGCGACTGCCTCGCCCGGCGCCGATGC GTCGGTCGTGATGCAGGGCATCTCGGCCGCGCTCGACGACGCGGCGGCGGCCGCCACGGCGCTCGGCCTGTTTGCGACCG GCGTGTTTCTCGCCATGGTCGGCTGGCAGTTGCCGTCTGTCGCGTCGGGCCTGTCAGGTGGCGCAACGCTTTCCGGTTTC GGCGCGTTCGTGGCCGGTGTTGCTTCGCGCAGCGCCATGACGGCTATCGGCCGGGCATTCAAGGGCAACGGACGCGGCCC GCGTCCCGGCGGCGAGATTCATGACCGGACGGGCTCTGGCGGCGGATCGGGTGGAGGAACGACGCCCGCGTATCAGCGGG CCGCGCGCGCGAACCTGGGACAGCAGGGCGATTAA
Upstream 100 bases:
>100_bases ACGAGCAGTTGGCGAAGCGCCGAGCGGCGCAGTCAGAACAGGCCAGTGCGCGCCAGTCGAAGCAGTTGCCAGGGCCGGAG TCAGGGCAGGGAGGTGTGCG
Downstream 100 bases:
>100_bases AGGCGAATGGACAGCGAGGTGATGACGATGAACGGACGAAACAGATGGATCGGTGCCGTGTTCGTGCCGGCAATGTGGTG CGTCGGTGCGCACGCGCAGG
Product: putative type IV secretion system protein VirB6
Products: NA
Alternate protein names: Type IV Secretion System /TraH; VblB6 Protein; Type IV Secretory Pathway Component; Type IV Secretion System; VirB6 Conjugative Transfer Protein; Conjugal Transfer Protein; VirB6 Protein
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MSGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTGVTIWVLAYGLAVVRGEAHEAVPAFAWRGLKVAITLAFALSSG IYQQQVVTAVDGATSGLAQTIQNAANTTGGGNPGCGSVNGSSATGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFS PSGLAAAIGDFTCGLIAALGGSIFLIVLAFEVVMARMLLDLVLGLGPVFIACAAFSPTARFFEAWTAKVVNYALLQVLVA AFLGMALTAFSSDLTTLHATASPGADASVVMQGISAALDDAAAAATALGLFATGVFLAMVGWQLPSVASGLSGGATLSGF GAFVAGVASRSAMTAIGRAFKGNGRGPRPGGEIHDRTGSGGGSGGGTTPAYQRAARANLGQQGD
Sequences:
>Translated_384_residues MSGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTGVTIWVLAYGLAVVRGEAHEAVPAFAWRGLKVAITLAFALSSG IYQQQVVTAVDGATSGLAQTIQNAANTTGGGNPGCGSVNGSSATGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFS PSGLAAAIGDFTCGLIAALGGSIFLIVLAFEVVMARMLLDLVLGLGPVFIACAAFSPTARFFEAWTAKVVNYALLQVLVA AFLGMALTAFSSDLTTLHATASPGADASVVMQGISAALDDAAAAATALGLFATGVFLAMVGWQLPSVASGLSGGATLSGF GAFVAGVASRSAMTAIGRAFKGNGRGPRPGGEIHDRTGSGGGSGGGTTPAYQRAARANLGQQGD >Mature_383_residues SGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTGVTIWVLAYGLAVVRGEAHEAVPAFAWRGLKVAITLAFALSSGI YQQQVVTAVDGATSGLAQTIQNAANTTGGGNPGCGSVNGSSATGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFSP SGLAAAIGDFTCGLIAALGGSIFLIVLAFEVVMARMLLDLVLGLGPVFIACAAFSPTARFFEAWTAKVVNYALLQVLVAA FLGMALTAFSSDLTTLHATASPGADASVVMQGISAALDDAAAAATALGLFATGVFLAMVGWQLPSVASGLSGGATLSGFG AFVAGVASRSAMTAIGRAFKGNGRGPRPGGEIHDRTGSGGGSGGGTTPAYQRAARANLGQQGD
Specific function: Unknown
COG id: COG3704
COG function: function code U; Type IV secretory pathway, VirB6 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38301; Mature: 38170
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTGVTIWVLAYGLAVVRGEAHEAVP CCCCHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AFAWRGLKVAITLAFALSSGIYQQQVVTAVDGATSGLAQTIQNAANTTGGGNPGCGSVNG HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC SSATGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFSPSGLAAAIGDFTCGLIAALG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH GSIFLIVLAFEVVMARMLLDLVLGLGPVFIACAAFSPTARFFEAWTAKVVNYALLQVLVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH AFLGMALTAFSSDLTTLHATASPGADASVVMQGISAALDDAAAAATALGLFATGVFLAMV HHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GWQLPSVASGLSGGATLSGFGAFVAGVASRSAMTAIGRAFKGNGRGPRPGGEIHDRTGSG HCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GGSGGGTTPAYQRAARANLGQQGD CCCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure SGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTGVTIWVLAYGLAVVRGEAHEAVP CCCHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AFAWRGLKVAITLAFALSSGIYQQQVVTAVDGATSGLAQTIQNAANTTGGGNPGCGSVNG HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC SSATGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFSPSGLAAAIGDFTCGLIAALG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH GSIFLIVLAFEVVMARMLLDLVLGLGPVFIACAAFSPTARFFEAWTAKVVNYALLQVLVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH AFLGMALTAFSSDLTTLHATASPGADASVVMQGISAALDDAAAAATALGLFATGVFLAMV HHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GWQLPSVASGLSGGATLSGFGAFVAGVASRSAMTAIGRAFKGNGRGPRPGGEIHDRTGSG HCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GGSGGGTTPAYQRAARANLGQQGD CCCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA