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The map label for this gene is virB5 [H]

Identifier: 91784045

GI number: 91784045

Start: 2968815

End: 2969510

Strand: Reverse

Name: virB5 [H]

Synonym: Bxe_A1758

Alternate gene names: 91784045

Gene position: 2969510-2968815 (Counterclockwise)

Preceding gene: 91784046

Following gene: 91784044

Centisome position: 60.65

GC content: 64.22

Gene sequence:

>696_bases
ATGAACGGACGAAACAGATGGATCGGTGCCGTGTTCGTGCCGGCAATGTGGTGCGTCGGTGCGCACGCGCAGGGCATCCC
GGTCTTTGACGCGCAGAACGTCGCGCAGGCCATCGCGACGGTCGCCCAACTGGAGCAGCAGGTGCGGCAGGAAATCCAGA
TCTACCAGTCGACGGTCGGCACGCGTGGTTTCGGTGCGCTGATGAGCAATCCGGTCGTGGCGAAGTCGCTGCCGTCGAAC
TGGCAGAGCGTCTATACGGCGATCCAGAACGGCGGGTACTCGGGCCTGACGGGTAGCGCACAGGCGCTGCGTTCGGCTAG
CCAGATCTACAACTGCGAGGACCAGACCGGGATCGACCAGCAGGTGTGCCAGCGCGCGCTGAGCAAGCCGTTCCAGGACA
AGGCGTTCGGGCAGCAGGCGTACCAGACCGAGCTGCAGGAGCTGAACCAGATCCAGAGCCTCGCGCAGCAGATCGACGTG
ACCCAGGACCCGAAGGGCGTCGCCGAACTGCAGGCACGCATCCAGGCCGAGACCACGACGGTCAACAACGAGATGACCAG
ACTGCAACTGTTCCGGATGCTGTCCGAGGCGGAAGACAAGCTCGTGGCTGAGCAGCAGGGCGAGCTGGTGCTGAGTCGCG
CGGGCAAAACCAGCCGGCTCCAGGACCAGATGGTTCCCGCGTCATTCGGAAACTGA

Upstream 100 bases:

>100_bases
CGGATCGGGTGGAGGAACGACGCCCGCGTATCAGCGGGCCGCGCGCGCGAACCTGGGACAGCAGGGCGATTAAAGGCGAA
TGGACAGCGAGGTGATGACG

Downstream 100 bases:

>100_bases
GGGAGCATCCATGTCCATCCTGACCTCCCTGATTCTTGCCGGATGTCTCGTCAGTCTGGCCGCATGCAGCAGCGAACCGC
CGAAGCCTGTACTGCCCGAC

Product: putative type IV secretion system protein VirB5/TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNGRNRWIGAVFVPAMWCVGAHAQGIPVFDAQNVAQAIATVAQLEQQVRQEIQIYQSTVGTRGFGALMSNPVVAKSLPSN
WQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQQVCQRALSKPFQDKAFGQQAYQTELQELNQIQSLAQQIDV
TQDPKGVAELQARIQAETTTVNNEMTRLQLFRMLSEAEDKLVAEQQGELVLSRAGKTSRLQDQMVPASFGN

Sequences:

>Translated_231_residues
MNGRNRWIGAVFVPAMWCVGAHAQGIPVFDAQNVAQAIATVAQLEQQVRQEIQIYQSTVGTRGFGALMSNPVVAKSLPSN
WQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQQVCQRALSKPFQDKAFGQQAYQTELQELNQIQSLAQQIDV
TQDPKGVAELQARIQAETTTVNNEMTRLQLFRMLSEAEDKLVAEQQGELVLSRAGKTSRLQDQMVPASFGN
>Mature_231_residues
MNGRNRWIGAVFVPAMWCVGAHAQGIPVFDAQNVAQAIATVAQLEQQVRQEIQIYQSTVGTRGFGALMSNPVVAKSLPSN
WQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQQVCQRALSKPFQDKAFGQQAYQTELQELNQIQSLAQQIDV
TQDPKGVAELQARIQAETTTVNNEMTRLQLFRMLSEAEDKLVAEQQGELVLSRAGKTSRLQDQMVPASFGN

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012991
- InterPro:   IPR014158
- InterPro:   IPR023220 [H]

Pfam domain/function: PF07996 T4SS [H]

EC number: NA

Molecular weight: Translated: 25297; Mature: 25297

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGRNRWIGAVFVPAMWCVGAHAQGIPVFDAQNVAQAIATVAQLEQQVRQEIQIYQSTVG
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TRGFGALMSNPVVAKSLPSNWQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQ
CCHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
QVCQRALSKPFQDKAFGQQAYQTELQELNQIQSLAQQIDVTQDPKGVAELQARIQAETTT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VNNEMTRLQLFRMLSEAEDKLVAEQQGELVLSRAGKTSRLQDQMVPASFGN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNGRNRWIGAVFVPAMWCVGAHAQGIPVFDAQNVAQAIATVAQLEQQVRQEIQIYQSTVG
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TRGFGALMSNPVVAKSLPSNWQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQ
CCHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
QVCQRALSKPFQDKAFGQQAYQTELQELNQIQSLAQQIDVTQDPKGVAELQARIQAETTT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VNNEMTRLQLFRMLSEAEDKLVAEQQGELVLSRAGKTSRLQDQMVPASFGN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]