| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91784005
Identifier: 91784005
GI number: 91784005
Start: 2921660
End: 2924008
Strand: Reverse
Name: 91784005
Synonym: Bxe_A1800
Alternate gene names: NA
Gene position: 2924008-2921660 (Counterclockwise)
Preceding gene: 91784013
Following gene: 91784004
Centisome position: 59.72
GC content: 59.86
Gene sequence:
>2349_bases ATGCATTTGAAAAAGCTGGTCGTCCGCAATTTCAGGCGGCTACGCAACGTCGTGATCGATCTTGCATCCGACATCTCGAT TTTCGTCGGCGCGAACAACAGCGGCAAGACATCAGTTGGGCACGCCCTCCAGTTGTTCACCGGAGGCGGTCGTTTCAACA TCCACGACTTCAGCGCCGAGCTTTGGCCCGACATCGTCGCGTTCGGTGAGGACGAAGGCGAAGGCGTAGGCGAATCGTCC TTGCCTCAGATCGAAATCGACATCTGGCTCGAAATCGGCCCGGACGATGTTCACCGTGTCATCGATCTTCTGCCCAGCCT GGCTTGGGAGGGCACGCTGGTGGGGATGCGTGTCGCCTACGCGCCCAGAAATCCTGCGGAGACGCGGGCGCGCTATGCGG AAGTGCGTCAGCGCGCGCTCGATGCAGTCGCAAAGAATGAAGACGGAGCGCCAGTCTTTGACCCATCGCCACGTAACCTG CGGGAGTTCCTCCGCGACAGGCTGCACGACGAATATGAGCTATGTCATTTCGTACTGGATCCTGCACGTTTCAGCGCGAA TATGATCCCAGAGGATGGCTATGCCCCGGCCCCGCTAACCGGTCGCGACCGGAGTGGGCGTGAGATCTTGAACGGTCTTC TTCATATCGACTTCTTGAACGCGCAACGCCATCTCTCGGACGGCCCTGGTGGCTCGCGCGCCGAGGATCTCTCCCACGTG CTCAGTCGCTTCTATGGACGCAACCTCGAACAGAAAGGCGAAGATATCGAGGCGTTGCGTGCCCTGGCAGCGTCAGAGGT CTCGCTCAATGAGCATCTTGAGCGGGTGTTCGAGCCGACGCTTAAGAGCTTGTCGAAGCTAGGTTATCCGGGTCTTTCAA ACCCGCGCATGATGATCCGCTCGGCGCTCGACCCGGTCAAGATCATGAACGGGCGCGATGGTGCGATCGTCCACTATGCA CTGGGTGGGGATGACGGGAATCCCGACCCGCCCACTTTGCCCGACCACTATAACGGCTTGGGCTTCAAGAACCTCATTTT CATGGTTGTCGAACTGCTCGATCTTCACGCCCAGTGGCTGGCGATCGAGGGGAGCCGTCCGCCGGTCCACCTGATTTTTG TCGAGGAGCCCGAGGCGCACCTTCACGCCCAGCTTCAACAGGCCTTCATCCGGAAAGTGATGGATATCCTCGCGCTTAAG GACGAGGACCGCACGCACTATACGAGCCAAGTCGTCGTCACGACCCACTCGACTCACATTCTTTACGAACGAGGCTTCCG GCCGATTCGCTATTTTCGTCGGAGCCGTTTGCAGAATGTACCGACCTCGGATGTCCTCAACCTATCGCTCTTCTACGACA GCACTGACCCGGACATTCGGAGCTTTCTTGAGCGCTATTTGAAGCTTGCGCACTGCGATCTCTTTTTTGCCGACGGCGCC GTGCTGGTCGAAGGCAATGTTGAACGGCTGCTGTTGCCGCAGATGATCGCCAATGCCGCGCCGCGACTGCAATCGACCTA TCTCACCGTCCTAGAGATCGGCGGGGCGTTCGGCTTCCGATTCAAGACGCTGATCGAGTTTCTCGGCCTCACGACGCTTA TTATCACCGACCTTGACAGCGTGTTTGGTCCACTGGCGCAGGACGGCGAGGACGCTGCCCATGTTCAGCCAGCACACGTG GCGCCGCCTGCTGAGAATGCGGTGGCTCCGGACGCTGACGTCGAAGACACGGACGATGAAGATGAGGATGCGCCTGCGGC GGCGGAGAAGCCCGGTAAGGCGTGCGTCGCCGGCCAACCCGGCGCAGCGACATCCAATCAGACGTTGGTCCAATGGCTAC CGAAATGTGCGACGATCGCCGCCCTGTGGGCTGCGTCGGCTGAGCAGAAGATTCAGGCACGGGCGAACGACAATGACGCT TTGGTACGGGTTGCCTATCAGTGCCGGACTGATGTGACCTGGGGCGGAGAAACCTTGGCGCTCGCCGGTCGTACGCTAGA GGAAGCATTCGCGCTCGAAAATCTGGAATGGTGCCAACACAAAGACCGCAAGCCGCTTCAGCTCCGCATCGCTAAGGCTG GCGAAAAGGACCTGGTTACGCTTGCGGAGCGTATCCACAAGCGGGTGCAGGCAAAGAGCTTCAGCAAGACCGACTTCGCG CTCGCCTTGCTCGCCGAGGATCCGGGTAATTGGACGGTCCCGGCCTATATCGCCGAGGGCCTGTGCTGGCTGGAGACCGA GATCGCGCCGCTGTCGCTAGACGATGGTGAAGACGGCGAGCAGCAAGAAGAAGGCGGTCTTGAGCTGGCGAACGGGGTGG TTGTCGCTGGCGATGGGGTGGTTGCGTGA
Upstream 100 bases:
>100_bases GGCCGGTCAAGGTCATCGCTTCCAGAGAAACGGTGTAGTAAGCTGCTTAAGAAAGCTGGCCTTTTGAGCACGCGGGTGGT CCAATAACCGGGGGATGGGG
Downstream 100 bases:
>100_bases CGAGCCGCATTGGCAGTCCCAACACGCAAGCCGACCTGGACGTTCGGGCGTGTCTCGATCGGATGCCGCCGCGCTCGTTC GTCATGGTCGCCGGCGCAGG
Product: ATP-dependent endonuclease
Products: NA
Alternate protein names: ATP-Dependent Endonuclease OLD Family; ATP-Dependent Endonuclease; Overcoming Lysogenization Defect Protein; Pathogenesis Related Protein
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MHLKKLVVRNFRRLRNVVIDLASDISIFVGANNSGKTSVGHALQLFTGGGRFNIHDFSAELWPDIVAFGEDEGEGVGESS LPQIEIDIWLEIGPDDVHRVIDLLPSLAWEGTLVGMRVAYAPRNPAETRARYAEVRQRALDAVAKNEDGAPVFDPSPRNL REFLRDRLHDEYELCHFVLDPARFSANMIPEDGYAPAPLTGRDRSGREILNGLLHIDFLNAQRHLSDGPGGSRAEDLSHV LSRFYGRNLEQKGEDIEALRALAASEVSLNEHLERVFEPTLKSLSKLGYPGLSNPRMMIRSALDPVKIMNGRDGAIVHYA LGGDDGNPDPPTLPDHYNGLGFKNLIFMVVELLDLHAQWLAIEGSRPPVHLIFVEEPEAHLHAQLQQAFIRKVMDILALK DEDRTHYTSQVVVTTHSTHILYERGFRPIRYFRRSRLQNVPTSDVLNLSLFYDSTDPDIRSFLERYLKLAHCDLFFADGA VLVEGNVERLLLPQMIANAAPRLQSTYLTVLEIGGAFGFRFKTLIEFLGLTTLIITDLDSVFGPLAQDGEDAAHVQPAHV APPAENAVAPDADVEDTDDEDEDAPAAAEKPGKACVAGQPGAATSNQTLVQWLPKCATIAALWAASAEQKIQARANDNDA LVRVAYQCRTDVTWGGETLALAGRTLEEAFALENLEWCQHKDRKPLQLRIAKAGEKDLVTLAERIHKRVQAKSFSKTDFA LALLAEDPGNWTVPAYIAEGLCWLETEIAPLSLDDGEDGEQQEEGGLELANGVVVAGDGVVA
Sequences:
>Translated_782_residues MHLKKLVVRNFRRLRNVVIDLASDISIFVGANNSGKTSVGHALQLFTGGGRFNIHDFSAELWPDIVAFGEDEGEGVGESS LPQIEIDIWLEIGPDDVHRVIDLLPSLAWEGTLVGMRVAYAPRNPAETRARYAEVRQRALDAVAKNEDGAPVFDPSPRNL REFLRDRLHDEYELCHFVLDPARFSANMIPEDGYAPAPLTGRDRSGREILNGLLHIDFLNAQRHLSDGPGGSRAEDLSHV LSRFYGRNLEQKGEDIEALRALAASEVSLNEHLERVFEPTLKSLSKLGYPGLSNPRMMIRSALDPVKIMNGRDGAIVHYA LGGDDGNPDPPTLPDHYNGLGFKNLIFMVVELLDLHAQWLAIEGSRPPVHLIFVEEPEAHLHAQLQQAFIRKVMDILALK DEDRTHYTSQVVVTTHSTHILYERGFRPIRYFRRSRLQNVPTSDVLNLSLFYDSTDPDIRSFLERYLKLAHCDLFFADGA VLVEGNVERLLLPQMIANAAPRLQSTYLTVLEIGGAFGFRFKTLIEFLGLTTLIITDLDSVFGPLAQDGEDAAHVQPAHV APPAENAVAPDADVEDTDDEDEDAPAAAEKPGKACVAGQPGAATSNQTLVQWLPKCATIAALWAASAEQKIQARANDNDA LVRVAYQCRTDVTWGGETLALAGRTLEEAFALENLEWCQHKDRKPLQLRIAKAGEKDLVTLAERIHKRVQAKSFSKTDFA LALLAEDPGNWTVPAYIAEGLCWLETEIAPLSLDDGEDGEQQEEGGLELANGVVVAGDGVVA >Mature_782_residues MHLKKLVVRNFRRLRNVVIDLASDISIFVGANNSGKTSVGHALQLFTGGGRFNIHDFSAELWPDIVAFGEDEGEGVGESS LPQIEIDIWLEIGPDDVHRVIDLLPSLAWEGTLVGMRVAYAPRNPAETRARYAEVRQRALDAVAKNEDGAPVFDPSPRNL REFLRDRLHDEYELCHFVLDPARFSANMIPEDGYAPAPLTGRDRSGREILNGLLHIDFLNAQRHLSDGPGGSRAEDLSHV LSRFYGRNLEQKGEDIEALRALAASEVSLNEHLERVFEPTLKSLSKLGYPGLSNPRMMIRSALDPVKIMNGRDGAIVHYA LGGDDGNPDPPTLPDHYNGLGFKNLIFMVVELLDLHAQWLAIEGSRPPVHLIFVEEPEAHLHAQLQQAFIRKVMDILALK DEDRTHYTSQVVVTTHSTHILYERGFRPIRYFRRSRLQNVPTSDVLNLSLFYDSTDPDIRSFLERYLKLAHCDLFFADGA VLVEGNVERLLLPQMIANAAPRLQSTYLTVLEIGGAFGFRFKTLIEFLGLTTLIITDLDSVFGPLAQDGEDAAHVQPAHV APPAENAVAPDADVEDTDDEDEDAPAAAEKPGKACVAGQPGAATSNQTLVQWLPKCATIAALWAASAEQKIQARANDNDA LVRVAYQCRTDVTWGGETLALAGRTLEEAFALENLEWCQHKDRKPLQLRIAKAGEKDLVTLAERIHKRVQAKSFSKTDFA LALLAEDPGNWTVPAYIAEGLCWLETEIAPLSLDDGEDGEQQEEGGLELANGVVVAGDGVVA
Specific function: Unknown
COG id: COG3593
COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86200; Mature: 86200
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLKKLVVRNFRRLRNVVIDLASDISIFVGANNSGKTSVGHALQLFTGGGRFNIHDFSAE CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHEEEEEECCCEEEEECCCHH LWPDIVAFGEDEGEGVGESSLPQIEIDIWLEIGPDDVHRVIDLLPSLAWEGTLVGMRVAY HCCHHHCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEE APRNPAETRARYAEVRQRALDAVAKNEDGAPVFDPSPRNLREFLRDRLHDEYELCHFVLD CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHC PARFSANMIPEDGYAPAPLTGRDRSGREILNGLLHIDFLNAQRHLSDGPGGSRAEDLSHV HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECHHHHCCCCCCCCHHHHHHHH LSRFYGRNLEQKGEDIEALRALAASEVSLNEHLERVFEPTLKSLSKLGYPGLSNPRMMIR HHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH SALDPVKIMNGRDGAIVHYALGGDDGNPDPPTLPDHYNGLGFKNLIFMVVELLDLHAQWL HCCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEE AIEGSRPPVHLIFVEEPEAHLHAQLQQAFIRKVMDILALKDEDRTHYTSQVVVTTHSTHI EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEE LYERGFRPIRYFRRSRLQNVPTSDVLNLSLFYDSTDPDIRSFLERYLKLAHCDLFFADGA EHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCE VLVEGNVERLLLPQMIANAAPRLQSTYLTVLEIGGAFGFRFKTLIEFLGLTTLIITDLDS EEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VFGPLAQDGEDAAHVQPAHVAPPAENAVAPDADVEDTDDEDEDAPAAAEKPGKACVAGQP HHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC GAATSNQTLVQWLPKCATIAALWAASAEQKIQARANDNDALVRVAYQCRTDVTWGGETLA CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCEEE LAGRTLEEAFALENLEWCQHKDRKPLQLRIAKAGEKDLVTLAERIHKRVQAKSFSKTDFA ECCHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEE LALLAEDPGNWTVPAYIAEGLCWLETEIAPLSLDDGEDGEQQEEGGLELANGVVVAGDGV EEEEEECCCCCEEHHHHHCCEEEEECCCCEEECCCCCCCCCHHHCCCEEECCEEEECCCC VA CC >Mature Secondary Structure MHLKKLVVRNFRRLRNVVIDLASDISIFVGANNSGKTSVGHALQLFTGGGRFNIHDFSAE CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHEEEEEECCCEEEEECCCHH LWPDIVAFGEDEGEGVGESSLPQIEIDIWLEIGPDDVHRVIDLLPSLAWEGTLVGMRVAY HCCHHHCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEE APRNPAETRARYAEVRQRALDAVAKNEDGAPVFDPSPRNLREFLRDRLHDEYELCHFVLD CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHC PARFSANMIPEDGYAPAPLTGRDRSGREILNGLLHIDFLNAQRHLSDGPGGSRAEDLSHV HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECHHHHCCCCCCCCHHHHHHHH LSRFYGRNLEQKGEDIEALRALAASEVSLNEHLERVFEPTLKSLSKLGYPGLSNPRMMIR HHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH SALDPVKIMNGRDGAIVHYALGGDDGNPDPPTLPDHYNGLGFKNLIFMVVELLDLHAQWL HCCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEE AIEGSRPPVHLIFVEEPEAHLHAQLQQAFIRKVMDILALKDEDRTHYTSQVVVTTHSTHI EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEE LYERGFRPIRYFRRSRLQNVPTSDVLNLSLFYDSTDPDIRSFLERYLKLAHCDLFFADGA EHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCE VLVEGNVERLLLPQMIANAAPRLQSTYLTVLEIGGAFGFRFKTLIEFLGLTTLIITDLDS EEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VFGPLAQDGEDAAHVQPAHVAPPAENAVAPDADVEDTDDEDEDAPAAAEKPGKACVAGQP HHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC GAATSNQTLVQWLPKCATIAALWAASAEQKIQARANDNDALVRVAYQCRTDVTWGGETLA CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCEEE LAGRTLEEAFALENLEWCQHKDRKPLQLRIAKAGEKDLVTLAERIHKRVQAKSFSKTDFA ECCHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEE LALLAEDPGNWTVPAYIAEGLCWLETEIAPLSLDDGEDGEQQEEGGLELANGVVVAGDGV EEEEEECCCCCEEHHHHHCCEEEEECCCCEEECCCCCCCCCHHHCCCEEECCEEEECCCC VA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA