| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is recB [C]
Identifier: 91784004
GI number: 91784004
Start: 2919786
End: 2921663
Strand: Reverse
Name: recB [C]
Synonym: Bxe_A1801
Alternate gene names: 91784004
Gene position: 2921663-2919786 (Counterclockwise)
Preceding gene: 91784005
Following gene: 91783997
Centisome position: 59.68
GC content: 60.12
Gene sequence:
>1878_bases GTGACGAGCCGCATTGGCAGTCCCAACACGCAAGCCGACCTGGACGTTCGGGCGTGTCTCGATCGGATGCCGCCGCGCTC GTTCGTCATGGTCGCCGGCGCAGGGTCGGGGAAGACGACCTCGCTGGTCAAGGCTATCGCGCATCTGGCCGAGACACGCG GTCCCGCTCTGCGTCGGGCGGGGCAGCAAATTGCCTGCATCACATATACCGAAGTCGCTGTCGGTGAAATTGTGGCCGAC GTTGGCGTCTCGCCGCTATTCCACATTTCGACGATCCACAGTTTCTTGTGGTCGATCATCCGGCCGTTTCATATCGATAT CGCGACCTGGGTCGCTACCCGTATCGAGGAGAAGATCGCGGAGCGACGCGAACATTACGACAGGCCCCGGACGCAGGAGA GAACGAAGGCGCGTCTTGCACAGGAGATTGCTGATCTGGAGGCCGAGTTGGATGCAATCGGTGGAGTCGGGAAGTTCGTC TACGGCAATGGCAGCAGTTACGCCGAGGGCATTCTCGGCCACGACGATATCCTTAAGCTTGCTCCAGCGTGTGTCGCTTC GCATCCACTGCTGAGACTTCTTGTTGCTAAACGCTTTCCCTACATCTTCGTCGATGAAAGCCAGGACACCAATCCGGAGG TGGTGGAGGCGCTACGACAAATCGCGGGGGACCATCCTGATCTTTGCGTTGGTTTCTTCGGTGACCCCATGCAGAAGATC TATATGAGCGGAGCAGGCGCTGTGCCGTTGAACGACGGCTGGGCGGAGGTCACAAAACCCGAGAACTTCCGCTGCCCGAC ATCAGTACTTGGGGTCATCAATGCGATCCGCGCCGGTGGCGACCGCCTAGAGCAGGTGCGTGGTCGGACAGTGACCGTTG ATGGCATCCAGCAACCCGTCGCTGGCTCCTCTAATCTGTTCGTCCTCCCGGCGGACGGTGAACGGAGCGCGCACCTCGCC GCTGTTCGGCGGTGGTTGGCGGTCGAAACCGGGGATGATCTCTGGCTAAGCGATATGCGGGAGGGCGATGTGCGCCTGCT TGTGCTGGTGCACCGCATGGCCGCCACCCGGCTCGGCTTTCCCAATCTGTATGCCGCGCTCAATGACCGAGCCCCAATGA GCTTGAGTGAGGGTTTGACCGATGGAACAGCCTGGCCCCTCCGCCCGGTTGCCCAGCACATACTCCCGCTTGTCGTCGCG GCGCGAGCGGGGGATCAGTTCACCGTGATGTCGGTCTTGCGCAGCGAAAGCCCGAAACTCGAGCCCGAGCGGCTTCGAGG ACAGGCGACGGCACCTGTTCTTAGAGCGCTGCAACAAGCGCTCGACGGGCTTGTGGCGTTATTGGCGGAAGGATCGCAGG CGACCGTGCGAGACGTCTTGACACTTGTGCGCGATAGCGAACTGTTGCGCCTCGACGATCGCTTTGGCGTGCATCTGGTT GCCGAGCCGGTAGACGACGGCAGCAGCGGATTCGAGAACGTTCAGGCGTACCTGGCGTGCGGTGTCGACGAACTCTGGGC TTACCGGCGCTACTTCACCGAGGAATCACCGTTCGCGACCCATCATGGTGTGAAAGGTGCGCAGTTTGAGCGTGTTCTGG TCGTGATTGACGATGATGAAGCTGGCTTCCGGCAATATTCCTATGGAAAGTATTTTGGGTACGTCCCGCTCTCGGAAAGC GACGAAGCCAGGATTGCTTCAGATGAAGAATCCGTACTTGATCGAACACGTCGCCTCTTTTACGTGTGCTGCTCACGAGC GGTGAAGGATTTGGCAGTCGTGGTTTTCGCCCCTGATGTCACGGCGGCCCGCACCGCGATCGTCGGGAAGAATCTATTTC CCGAGGCCGTAATACGGGGAGTGGAGCATCTGGATTGA
Upstream 100 bases:
>100_bases CGCCGCTGTCGCTAGACGATGGTGAAGACGGCGAGCAGCAAGAAGAAGGCGGTCTTGAGCTGGCGAACGGGGTGGTTGTC GCTGGCGATGGGGTGGTTGC
Downstream 100 bases:
>100_bases GGTCATCGATCTCAAAAAACAAAAAGTTCGAGGACTTGGAGCGCATCTAGCTCTGGCATCAGGATTACGGCGGTTATTGA GAGCTATCCGGTCGGCTTCT
Product: hypothetical protein
Products: Hydrolyzed double-stranded DNA [C]
Alternate protein names: UvrD/REP Helicase; Pathogenesis-Related Protein; DNA Helicase; ATP-Dependent DNA Helicase; Superfamily I DNA And RNA Helicase-Like Protein; ATP-Dependent DNA Helicase UvrD/REP Family; Superfamily I DNA/RNA Helicase-Like Protein; ATP-Dependent DNA Helicase Pcra; Superfamily I DNA/RNA Helicase
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MTSRIGSPNTQADLDVRACLDRMPPRSFVMVAGAGSGKTTSLVKAIAHLAETRGPALRRAGQQIACITYTEVAVGEIVAD VGVSPLFHISTIHSFLWSIIRPFHIDIATWVATRIEEKIAERREHYDRPRTQERTKARLAQEIADLEAELDAIGGVGKFV YGNGSSYAEGILGHDDILKLAPACVASHPLLRLLVAKRFPYIFVDESQDTNPEVVEALRQIAGDHPDLCVGFFGDPMQKI YMSGAGAVPLNDGWAEVTKPENFRCPTSVLGVINAIRAGGDRLEQVRGRTVTVDGIQQPVAGSSNLFVLPADGERSAHLA AVRRWLAVETGDDLWLSDMREGDVRLLVLVHRMAATRLGFPNLYAALNDRAPMSLSEGLTDGTAWPLRPVAQHILPLVVA ARAGDQFTVMSVLRSESPKLEPERLRGQATAPVLRALQQALDGLVALLAEGSQATVRDVLTLVRDSELLRLDDRFGVHLV AEPVDDGSSGFENVQAYLACGVDELWAYRRYFTEESPFATHHGVKGAQFERVLVVIDDDEAGFRQYSYGKYFGYVPLSES DEARIASDEESVLDRTRRLFYVCCSRAVKDLAVVVFAPDVTAARTAIVGKNLFPEAVIRGVEHLD
Sequences:
>Translated_625_residues MTSRIGSPNTQADLDVRACLDRMPPRSFVMVAGAGSGKTTSLVKAIAHLAETRGPALRRAGQQIACITYTEVAVGEIVAD VGVSPLFHISTIHSFLWSIIRPFHIDIATWVATRIEEKIAERREHYDRPRTQERTKARLAQEIADLEAELDAIGGVGKFV YGNGSSYAEGILGHDDILKLAPACVASHPLLRLLVAKRFPYIFVDESQDTNPEVVEALRQIAGDHPDLCVGFFGDPMQKI YMSGAGAVPLNDGWAEVTKPENFRCPTSVLGVINAIRAGGDRLEQVRGRTVTVDGIQQPVAGSSNLFVLPADGERSAHLA AVRRWLAVETGDDLWLSDMREGDVRLLVLVHRMAATRLGFPNLYAALNDRAPMSLSEGLTDGTAWPLRPVAQHILPLVVA ARAGDQFTVMSVLRSESPKLEPERLRGQATAPVLRALQQALDGLVALLAEGSQATVRDVLTLVRDSELLRLDDRFGVHLV AEPVDDGSSGFENVQAYLACGVDELWAYRRYFTEESPFATHHGVKGAQFERVLVVIDDDEAGFRQYSYGKYFGYVPLSES DEARIASDEESVLDRTRRLFYVCCSRAVKDLAVVVFAPDVTAARTAIVGKNLFPEAVIRGVEHLD >Mature_624_residues TSRIGSPNTQADLDVRACLDRMPPRSFVMVAGAGSGKTTSLVKAIAHLAETRGPALRRAGQQIACITYTEVAVGEIVADV GVSPLFHISTIHSFLWSIIRPFHIDIATWVATRIEEKIAERREHYDRPRTQERTKARLAQEIADLEAELDAIGGVGKFVY GNGSSYAEGILGHDDILKLAPACVASHPLLRLLVAKRFPYIFVDESQDTNPEVVEALRQIAGDHPDLCVGFFGDPMQKIY MSGAGAVPLNDGWAEVTKPENFRCPTSVLGVINAIRAGGDRLEQVRGRTVTVDGIQQPVAGSSNLFVLPADGERSAHLAA VRRWLAVETGDDLWLSDMREGDVRLLVLVHRMAATRLGFPNLYAALNDRAPMSLSEGLTDGTAWPLRPVAQHILPLVVAA RAGDQFTVMSVLRSESPKLEPERLRGQATAPVLRALQQALDGLVALLAEGSQATVRDVLTLVRDSELLRLDDRFGVHLVA EPVDDGSSGFENVQAYLACGVDELWAYRRYFTEESPFATHHGVKGAQFERVLVVIDDDEAGFRQYSYGKYFGYVPLSESD EARIASDEESVLDRTRRLFYVCCSRAVKDLAVVVFAPDVTAARTAIVGKNLFPEAVIRGVEHLD
Specific function: Required For Efficient DNA Repair; It Catalyzes The Unwinding Of Double-Stranded DNA And The Cleavage Of Single- Stranded DNA And It Stimulates Local Genetic Recombination. All Of These Activities Require Concomitant Hydrolysis Of ATP. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.1.11.5 [C]
Molecular weight: Translated: 68386; Mature: 68254
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRIGSPNTQADLDVRACLDRMPPRSFVMVAGAGSGKTTSLVKAIAHLAETRGPALRRA CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHC GQQIACITYTEVAVGEIVADVGVSPLFHISTIHSFLWSIIRPFHIDIATWVATRIEEKIA CCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERREHYDRPRTQERTKARLAQEIADLEAELDAIGGVGKFVYGNGSSYAEGILGHDDILKL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCHHHHHH APACVASHPLLRLLVAKRFPYIFVDESQDTNPEVVEALRQIAGDHPDLCVGFFGDPMQKI HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHH YMSGAGAVPLNDGWAEVTKPENFRCPTSVLGVINAIRAGGDRLEQVRGRTVTVDGIQQPV HHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCC AGSSNLFVLPADGERSAHLAAVRRWLAVETGDDLWLSDMREGDVRLLVLVHRMAATRLGF CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC PNLYAALNDRAPMSLSEGLTDGTAWPLRPVAQHILPLVVAARAGDQFTVMSVLRSESPKL CHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC EPERLRGQATAPVLRALQQALDGLVALLAEGSQATVRDVLTLVRDSELLRLDDRFGVHLV CHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHEEECCCCCEEEE AEPVDDGSSGFENVQAYLACGVDELWAYRRYFTEESPFATHHGVKGAQFERVLVVIDDDE ECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEEECCC AGFRQYSYGKYFGYVPLSESDEARIASDEESVLDRTRRLFYVCCSRAVKDLAVVVFAPDV CCCHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC TAARTAIVGKNLFPEAVIRGVEHLD HHHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure TSRIGSPNTQADLDVRACLDRMPPRSFVMVAGAGSGKTTSLVKAIAHLAETRGPALRRA CCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHC GQQIACITYTEVAVGEIVADVGVSPLFHISTIHSFLWSIIRPFHIDIATWVATRIEEKIA CCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERREHYDRPRTQERTKARLAQEIADLEAELDAIGGVGKFVYGNGSSYAEGILGHDDILKL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCHHHHHH APACVASHPLLRLLVAKRFPYIFVDESQDTNPEVVEALRQIAGDHPDLCVGFFGDPMQKI HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHH YMSGAGAVPLNDGWAEVTKPENFRCPTSVLGVINAIRAGGDRLEQVRGRTVTVDGIQQPV HHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCC AGSSNLFVLPADGERSAHLAAVRRWLAVETGDDLWLSDMREGDVRLLVLVHRMAATRLGF CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC PNLYAALNDRAPMSLSEGLTDGTAWPLRPVAQHILPLVVAARAGDQFTVMSVLRSESPKL CHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC EPERLRGQATAPVLRALQQALDGLVALLAEGSQATVRDVLTLVRDSELLRLDDRFGVHLV CHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHEEECCCCCEEEE AEPVDDGSSGFENVQAYLACGVDELWAYRRYFTEESPFATHHGVKGAQFERVLVVIDDDE ECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEEECCC AGFRQYSYGKYFGYVPLSESDEARIASDEESVLDRTRRLFYVCCSRAVKDLAVVVFAPDV CCCHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC TAARTAIVGKNLFPEAVIRGVEHLD HHHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Double-stranded DNA; H2O; DNA [C]
Specific reaction: Double-stranded DNA + H2O = hydrolyzed double-stranded DNA Protein + DNA = Protein-DNA [C]
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA