| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91783995
Identifier: 91783995
GI number: 91783995
Start: 2907679
End: 2908506
Strand: Reverse
Name: 91783995
Synonym: Bxe_A1813
Alternate gene names: NA
Gene position: 2908506-2907679 (Counterclockwise)
Preceding gene: 91783997
Following gene: 91783994
Centisome position: 59.41
GC content: 62.56
Gene sequence:
>828_bases TTGGAGTTCGGGCAAGCCGGGGCAGGGCGACGCGCATCGATCGCGCGTGTTCATCAATACTGGCCGGCGCTGGGAGTACT GTGCTGCTCGATTGCATTCACGACCGGCGTCGGCGCATTGAGCCTCGCCAGCACAGAAGCACAAGCCGCCGCCCCGACGA CGATCGGCATCGGCGTTGCTGCCGCGCCGCGCTATGAAGGCAGTAGCACCTATCACCTCGAACCGTTTCCGATTCTGTCC GCATCGCGCGGCATTTTCTTTCTCGATGGACTCGAAGGCGGCGTTGCCTTTCCATTGGGCGGTAATCTGAAGACCGGCCT GATCCTGTCGACCCAGTTTGGCCGCGACCAGAGCGACGGCGACCGGCTGAACGGCCTCGGCGACATCCATACCACGGCCG GATTCGGTGCGTTTCTGGACTGGCATCCGGGCGCTTTCGATGCGTCGCTCAAGTTACTCCAGTCGTTGCACGCCGGTTAC GGCGCTACGCTGACGCTGGAAACAAAATACACGTTCAAATTGGGCGCGCGCGACAGACTGACCGTTGGCAATGGCGCTGT GTGGGCCAACAGGGGTTCGATGCAGACTTTCTTCGGCGTATCGCCTGTGCAGGCGGCGAGCAGCGCCGCGGGTCTGCCGG TCTTTTCGCCGTCGGCGGGATTCAAGGACATCAGCACGTCGGCGACGTGGGTGCATCTCTTGAGCCGGAAGTGGTCGGTC AATGGCACACTCCGGGTGGACCATCTGCTTGGCGATGCAGCGGAGAGTCCGGTTGTCGAGCACAGCACGTCGCTGTTCGG CGGCGTAGGTGCAGCCTATACGTTCTGA
Upstream 100 bases:
>100_bases GGATGTTTGAGTCCAGGCGCGTCGTTGCGAACGGGCCTGCAAGCCGATCAAGGAAACGACCAGGAGAATCACGTTGGCGC ATCACTGCAAGACAAGGGCT
Downstream 100 bases:
>100_bases TGCAGCGGTCTTCCCATTTCTCTTTCACGGACGCTAATTCCGGGTGAACGACACGGCGCAGCGCACATTTTCTCCCATCG TTATGGCCGGCCGCTGGCGT
Product: putative exported (scaffolding) protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MEFGQAGAGRRASIARVHQYWPALGVLCCSIAFTTGVGALSLASTEAQAAAPTTIGIGVAAAPRYEGSSTYHLEPFPILS ASRGIFFLDGLEGGVAFPLGGNLKTGLILSTQFGRDQSDGDRLNGLGDIHTTAGFGAFLDWHPGAFDASLKLLQSLHAGY GATLTLETKYTFKLGARDRLTVGNGAVWANRGSMQTFFGVSPVQAASSAAGLPVFSPSAGFKDISTSATWVHLLSRKWSV NGTLRVDHLLGDAAESPVVEHSTSLFGGVGAAYTF
Sequences:
>Translated_275_residues MEFGQAGAGRRASIARVHQYWPALGVLCCSIAFTTGVGALSLASTEAQAAAPTTIGIGVAAAPRYEGSSTYHLEPFPILS ASRGIFFLDGLEGGVAFPLGGNLKTGLILSTQFGRDQSDGDRLNGLGDIHTTAGFGAFLDWHPGAFDASLKLLQSLHAGY GATLTLETKYTFKLGARDRLTVGNGAVWANRGSMQTFFGVSPVQAASSAAGLPVFSPSAGFKDISTSATWVHLLSRKWSV NGTLRVDHLLGDAAESPVVEHSTSLFGGVGAAYTF >Mature_275_residues MEFGQAGAGRRASIARVHQYWPALGVLCCSIAFTTGVGALSLASTEAQAAAPTTIGIGVAAAPRYEGSSTYHLEPFPILS ASRGIFFLDGLEGGVAFPLGGNLKTGLILSTQFGRDQSDGDRLNGLGDIHTTAGFGAFLDWHPGAFDASLKLLQSLHAGY GATLTLETKYTFKLGARDRLTVGNGAVWANRGSMQTFFGVSPVQAASSAAGLPVFSPSAGFKDISTSATWVHLLSRKWSV NGTLRVDHLLGDAAESPVVEHSTSLFGGVGAAYTF
Specific function: Unknown
COG id: COG3713
COG function: function code M; Outer membrane protein V
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mipA/ompV family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010583 [H]
Pfam domain/function: PF06629 MipA [H]
EC number: NA
Molecular weight: Translated: 28571; Mature: 28571
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFGQAGAGRRASIARVHQYWPALGVLCCSIAFTTGVGALSLASTEAQAAAPTTIGIGVA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCEEEECEE AAPRYEGSSTYHLEPFPILSASRGIFFLDGLEGGVAFPLGGNLKTGLILSTQFGRDQSDG ECCCCCCCCEEEECCCCEEECCCCEEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCCC DRLNGLGDIHTTAGFGAFLDWHPGAFDASLKLLQSLHAGYGATLTLETKYTFKLGARDRL CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEE TVGNGAVWANRGSMQTFFGVSPVQAASSAAGLPVFSPSAGFKDISTSATWVHLLSRKWSV EECCCEEEECCCCCEEEECCCHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCC NGTLRVDHLLGDAAESPVVEHSTSLFGGVGAAYTF CCEEEEHHHHCCCCCCCHHHHCHHHHCCCCCCCCC >Mature Secondary Structure MEFGQAGAGRRASIARVHQYWPALGVLCCSIAFTTGVGALSLASTEAQAAAPTTIGIGVA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCEEEECEE AAPRYEGSSTYHLEPFPILSASRGIFFLDGLEGGVAFPLGGNLKTGLILSTQFGRDQSDG ECCCCCCCCEEEECCCCEEECCCCEEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCCC DRLNGLGDIHTTAGFGAFLDWHPGAFDASLKLLQSLHAGYGATLTLETKYTFKLGARDRL CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEE TVGNGAVWANRGSMQTFFGVSPVQAASSAAGLPVFSPSAGFKDISTSATWVHLLSRKWSV EECCCEEEECCCCCEEEECCCHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCC NGTLRVDHLLGDAAESPVVEHSTSLFGGVGAAYTF CCEEEEHHHHCCCCCCCHHHHCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]