| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91783944
Identifier: 91783944
GI number: 91783944
Start: 2856027
End: 2857676
Strand: Direct
Name: 91783944
Synonym: Bxe_A1868
Alternate gene names: NA
Gene position: 2856027-2857676 (Clockwise)
Preceding gene: 91783940
Following gene: 91783947
Centisome position: 58.34
GC content: 66.12
Gene sequence:
>1650_bases ATGCCTGCTCACTTTTCACCGGCACATCAGCGTCCAGTTCACAGACGGCAACGCGAACGGCTGGCGCAGCGAGGCTGGCG CGCGCTCGACCGCGCGATGCAGAGGCCGTCGACATATCGTCACCCCGCGGGCCGCATTCGCCGCATCGAAACGCACATCT CGGTCGTGTACCTGGCCGGCCGGTATGCGTACAAGCTGAAGAAGCGCGTCAATCCCGGTTTCGTGGACTTCACGCAGGCA CGCGCGCGCGAACGCGCGTGCGCCGACGAGTTCCGGCTGAACCGCCGGCTCGCCCGTGAGATTTATCGCGGCGTCGTATC GATTACGCGCCGCGGGGGCTCGTACCGTGTCGCGACAACGGGCGAGGTCGCCGAGCACGCCGTCCTGATGCGACGCTTCG ACGAGCAGGAAATTTTCAAGGCATTGCAGGCGCGCGGCGAACTCGGTTTCGCGGAAATGGACGCCCTCGCCGGACAACTT GCGGCGTTCCACCGCCGTTCCTCACGCACGCCGCCTCGCGCGGTCTTCGGCTCCGCAGCGTTTGTTCAGGAACAGATGCA GACCGTGGTGGAAGCACTCCGCCGTGAAACCGGAGCGCGCCTGCCTGCCCGGATTTCCGCCTGGTGCGGGAGCGAAGGCC AACGCCTTGCCGGGCACTTCGCCGCGCGTCACGCAGGCGGCTTTGTGCGCGAGAGCCACGGCGACCTGCACCTCGATAAC ATCGTTCGGTGCGGCAAGCGCGTGCTCATGTTCGACTGCATCGAATTCGACGACGCCTTGCGCTGGATCGACATCGCCAG CGACCTGAGCTTTCCGTTGATGGATCTGCACGCGTGTGGCCGGCAAGATCTCGCGGCGCGCCTGTTGAACGGCTGGCTGC AACGTACAGGCGATTTTGCGGCGCTGCCGGTGCTGCGTTACTACATGGTCTACCGCGCATTGGTGCGCGCCCTCGTGGCA GTGTTGAAAACACGCGATCAGCCGCCTGATGAGGGCCTCGCGCGCGCCATGCCGTACCTGAATCTGGTCGAGCGCATGAT CGCGCCGCAGCGGCCGTACTTGCTGCTATGCCACGGCTACTCCGGATCGGGCAAGTCAGTGGCGAGCGAAGCGCTGGTGA GCCTGGTCGGCGCCGTGCGTCTGTCGAGCGATATCGAGCGCAAGCGCGGCCGCCCCTTCGCGCCTATCGATTCCCGTCCG CTGCCGGCCGAAGCCTACACGCACGACTCGATCGACCGGCATTACGATCTGCTGCTGCAATTGGCGCAACAGGTGCTGCT GGCCGGCTACCCTGCGCTGGTCGACGCGACCTTTCTCAAGAGCGCGCATCGCGCCCGCTTCGCCGCGCTCGCACGCTCGC ACGGCGTGCCGGTTTTTCTGCTCGATTTCCATGCGCGGGTACGTCAACTCGAACAGCGCGTGCAGGCGCGCGCCGCCGCT TCCCATACGGAATCGGACGCCGGCCCGCTCGTGCTGATCCGGCAACTGGCGAACGAGGAACCGCTCTCCGCGGAAGAAAT GCAGCGAACGGTGAGCTTCGATACGGAAGTGCCGCTCGCCGATTTCGGCCGTCTGGACTACTGGCGAAAACTGCTGCGGC GGCTTTGCGAGCCGGAAGCGGCAGCGCCGCCGGAGGTGGCGAGCGGCTAG
Upstream 100 bases:
>100_bases ACATCGCAGCCCAGGACGTCCGCAAGCATGATGTCGGTCAAGTCGCCGCGATGGTCCGCATCTATTCTGAAAGAACCCTT GATGCCCGACGGAGAGTTCC
Downstream 100 bases:
>100_bases CGCGAGGCATCTGTCAGGCAAGCTCCAACGCGAGTTCGATCAGCAGGGCCGCGTAACGAGCTGGAACAACGGCGCACGCA AGATCAAGGGCTACACACCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 549; Mature: 548
Protein sequence:
>549_residues MPAHFSPAHQRPVHRRQRERLAQRGWRALDRAMQRPSTYRHPAGRIRRIETHISVVYLAGRYAYKLKKRVNPGFVDFTQA RARERACADEFRLNRRLAREIYRGVVSITRRGGSYRVATTGEVAEHAVLMRRFDEQEIFKALQARGELGFAEMDALAGQL AAFHRRSSRTPPRAVFGSAAFVQEQMQTVVEALRRETGARLPARISAWCGSEGQRLAGHFAARHAGGFVRESHGDLHLDN IVRCGKRVLMFDCIEFDDALRWIDIASDLSFPLMDLHACGRQDLAARLLNGWLQRTGDFAALPVLRYYMVYRALVRALVA VLKTRDQPPDEGLARAMPYLNLVERMIAPQRPYLLLCHGYSGSGKSVASEALVSLVGAVRLSSDIERKRGRPFAPIDSRP LPAEAYTHDSIDRHYDLLLQLAQQVLLAGYPALVDATFLKSAHRARFAALARSHGVPVFLLDFHARVRQLEQRVQARAAA SHTESDAGPLVLIRQLANEEPLSAEEMQRTVSFDTEVPLADFGRLDYWRKLLRRLCEPEAAAPPEVASG
Sequences:
>Translated_549_residues MPAHFSPAHQRPVHRRQRERLAQRGWRALDRAMQRPSTYRHPAGRIRRIETHISVVYLAGRYAYKLKKRVNPGFVDFTQA RARERACADEFRLNRRLAREIYRGVVSITRRGGSYRVATTGEVAEHAVLMRRFDEQEIFKALQARGELGFAEMDALAGQL AAFHRRSSRTPPRAVFGSAAFVQEQMQTVVEALRRETGARLPARISAWCGSEGQRLAGHFAARHAGGFVRESHGDLHLDN IVRCGKRVLMFDCIEFDDALRWIDIASDLSFPLMDLHACGRQDLAARLLNGWLQRTGDFAALPVLRYYMVYRALVRALVA VLKTRDQPPDEGLARAMPYLNLVERMIAPQRPYLLLCHGYSGSGKSVASEALVSLVGAVRLSSDIERKRGRPFAPIDSRP LPAEAYTHDSIDRHYDLLLQLAQQVLLAGYPALVDATFLKSAHRARFAALARSHGVPVFLLDFHARVRQLEQRVQARAAA SHTESDAGPLVLIRQLANEEPLSAEEMQRTVSFDTEVPLADFGRLDYWRKLLRRLCEPEAAAPPEVASG >Mature_548_residues PAHFSPAHQRPVHRRQRERLAQRGWRALDRAMQRPSTYRHPAGRIRRIETHISVVYLAGRYAYKLKKRVNPGFVDFTQAR ARERACADEFRLNRRLAREIYRGVVSITRRGGSYRVATTGEVAEHAVLMRRFDEQEIFKALQARGELGFAEMDALAGQLA AFHRRSSRTPPRAVFGSAAFVQEQMQTVVEALRRETGARLPARISAWCGSEGQRLAGHFAARHAGGFVRESHGDLHLDNI VRCGKRVLMFDCIEFDDALRWIDIASDLSFPLMDLHACGRQDLAARLLNGWLQRTGDFAALPVLRYYMVYRALVRALVAV LKTRDQPPDEGLARAMPYLNLVERMIAPQRPYLLLCHGYSGSGKSVASEALVSLVGAVRLSSDIERKRGRPFAPIDSRPL PAEAYTHDSIDRHYDLLLQLAQQVLLAGYPALVDATFLKSAHRARFAALARSHGVPVFLLDFHARVRQLEQRVQARAAAS HTESDAGPLVLIRQLANEEPLSAEEMQRTVSFDTEVPLADFGRLDYWRKLLRRLCEPEAAAPPEVASG
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 61872; Mature: 61741
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAHFSPAHQRPVHRRQRERLAQRGWRALDRAMQRPSTYRHPAGRIRRIETHISVVYLAG CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH RYAYKLKKRVNPGFVDFTQARARERACADEFRLNRRLAREIYRGVVSITRRGGSYRVATT HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC GEVAEHAVLMRRFDEQEIFKALQARGELGFAEMDALAGQLAAFHRRSSRTPPRAVFGSAA HHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH FVQEQMQTVVEALRRETGARLPARISAWCGSEGQRLAGHFAARHAGGFVRESHGDLHLDN HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH IVRCGKRVLMFDCIEFDDALRWIDIASDLSFPLMDLHACGRQDLAARLLNGWLQRTGDFA HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHH ALPVLRYYMVYRALVRALVAVLKTRDQPPDEGLARAMPYLNLVERMIAPQRPYLLLCHGY HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC SGSGKSVASEALVSLVGAVRLSSDIERKRGRPFAPIDSRPLPAEAYTHDSIDRHYDLLLQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHH LAQQVLLAGYPALVDATFLKSAHRARFAALARSHGVPVFLLDFHARVRQLEQRVQARAAA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH SHTESDAGPLVLIRQLANEEPLSAEEMQRTVSFDTEVPLADFGRLDYWRKLLRRLCEPEA HCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCC AAPPEVASG CCCCCCCCC >Mature Secondary Structure PAHFSPAHQRPVHRRQRERLAQRGWRALDRAMQRPSTYRHPAGRIRRIETHISVVYLAG CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH RYAYKLKKRVNPGFVDFTQARARERACADEFRLNRRLAREIYRGVVSITRRGGSYRVATT HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC GEVAEHAVLMRRFDEQEIFKALQARGELGFAEMDALAGQLAAFHRRSSRTPPRAVFGSAA HHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH FVQEQMQTVVEALRRETGARLPARISAWCGSEGQRLAGHFAARHAGGFVRESHGDLHLDN HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH IVRCGKRVLMFDCIEFDDALRWIDIASDLSFPLMDLHACGRQDLAARLLNGWLQRTGDFA HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHH ALPVLRYYMVYRALVRALVAVLKTRDQPPDEGLARAMPYLNLVERMIAPQRPYLLLCHGY HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC SGSGKSVASEALVSLVGAVRLSSDIERKRGRPFAPIDSRPLPAEAYTHDSIDRHYDLLLQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHH LAQQVLLAGYPALVDATFLKSAHRARFAALARSHGVPVFLLDFHARVRQLEQRVQARAAA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH SHTESDAGPLVLIRQLANEEPLSAEEMQRTVSFDTEVPLADFGRLDYWRKLLRRLCEPEA HCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCC AAPPEVASG CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]