| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91783778
Identifier: 91783778
GI number: 91783778
Start: 2677108
End: 2678373
Strand: Reverse
Name: 91783778
Synonym: Bxe_A2034
Alternate gene names: NA
Gene position: 2678373-2677108 (Counterclockwise)
Preceding gene: 91783779
Following gene: 91783776
Centisome position: 54.71
GC content: 65.96
Gene sequence:
>1266_bases ATGACATTGCATCCGTTTTTCAGGCTCGCCGTGGCGGCGGGCCTCGTGACCGGTGGCGCGCTCGCGCTTGCCGCGACCAC CACCGTGGCGGGCGGCCGCTATGGCGACGTGACGGTCACTCGGCCCGCTGGTCCGTTACGCGGCTTCGTGGTGCTCTACT CGCAAGCTGGCGGCTGGAGCGCGGCGGATCAGCAGAGCGCCGATGCGCTCGCCAGGGCCGGCGCGTTGACCGTCGGCGTG GATACCGCGCGCTATGCCGCCAACCTCGCCGCAAAGAAAGAAGCCTGCCATCAGTTGGTGGGCGATGCCGAAGCGTTGAG CCATCAACTCGAACGGCAATCGCAGTCGAGCCACTATTTCGCGCCGATCGTCGCGGGTACGGGGCAGGGCGCGACGCTCG CCATGCGCGTGCTCGAACAGGCGCCGTCGAATACGATTGCCGGTGCGGTCGCGGTGGATGCCGAGCGCACGCTCGATCCG CGCTTCCAGCCGTGCCCGCCGGACCCGACGGTGATCCGCGACAAGGTGCCGGGCTTCGTCGAAAAAGCGGCCACGGGTAG CGCCGATCGCACGCGCCTCGTCGCGCTGGTCACGCCGCATCTGCAGGCGGTCTCGACGAGCGACGACGACGTCTCCGATC TGCCGCTGATCGAATTGCCGGCTGCGCATCCGAACGGCCTCATGGCGATCGTGATTTCCGGCGACGGCGGTTGGCGCGAT CTCGACAAGACGATCGCCCAGGCTTTGCAGAAAGACGGCGTTTCCGTGATCGGCTGGGACAGCCTGCGCTATTTCTGGAG CGAAAAGCCGCCCGCGCAGACGAGCCGCGACCTCGCACGCGTGATGCAAACCTATGGCGCGCGCTGGAATGCGCAGCACA TCGCACTGATCGGCTATTCGTTTGGCGCGGACGTGATGCCGTTCGCGTATAACCGTTTGCCGGCAGCGCTGCGCGCGAAA GTCTCGCTGATCGCATTGCTCGGTTTCGCGCCCGACGCCGATTTTCAGATTCGCGTGGGCGGCTGGCTCGGCATGCCGGC AAGCGACAAGGCACTGAAAGTGCAGCCGGAATTGGCCCGTGTGCCGCCCGCGATCGTGCAGTGCTTCTACGGCGAGAACG AAAAGGACACCTTGTGTCCGTCGCTGACGAAAACCGGCGTCGAGGTGATTCGCACCTCGGGCGATCACCACTTCGGCGGC GATTACCACTCGCTGGAACAGCGCATTCTGAGCGCCTTCAGAAAGCAGAGCGGCGTGCGCGACTGA
Upstream 100 bases:
>100_bases TCCAGCCGCATTGGGAGCCGCGCTATCTCGCGGCGTCGGGTTCGGTGGGCGTGTTCTTCACACTCGCGGACCTGTCATTG CTGGCGGGAGGCCGGCGTTC
Downstream 100 bases:
>100_bases TATCGCCGGACCGCCGGGGCGTGCCGCCGGCACGCGCCTTCGAATGCTCATTCGTCTGTTGAGAGCGCTATCGCACATAG TCCGGCTTCACCGGCATCTA
Product: putative virulence protein, Type IV secretion protein VirJ-like
Products: NA
Alternate protein names: Virulence Protein; Acid lerance Protein; Type IV Secretory Pathway VirJ Component-Like Protein; Type IV Secretion System VirJ-Like Protein; Acid Virulence Protein B; AcvB-Related Protein; Type IV Secretory Pathway VirJ Component-Like; Type IV Secretory Pathway Virj Component-Related Protein; Virj-Like Protein; Glycosyl Transferase/Polysaccharide Deacetylase; Type IV Secretory Pathway VirJ Component; Virulance And Acid lerance Protein; Type IV Secretion System Virj-Like Protein; Virulence Factor; Chromosomal Virulence Protein B
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MTLHPFFRLAVAAGLVTGGALALAATTTVAGGRYGDVTVTRPAGPLRGFVVLYSQAGGWSAADQQSADALARAGALTVGV DTARYAANLAAKKEACHQLVGDAEALSHQLERQSQSSHYFAPIVAGTGQGATLAMRVLEQAPSNTIAGAVAVDAERTLDP RFQPCPPDPTVIRDKVPGFVEKAATGSADRTRLVALVTPHLQAVSTSDDDVSDLPLIELPAAHPNGLMAIVISGDGGWRD LDKTIAQALQKDGVSVIGWDSLRYFWSEKPPAQTSRDLARVMQTYGARWNAQHIALIGYSFGADVMPFAYNRLPAALRAK VSLIALLGFAPDADFQIRVGGWLGMPASDKALKVQPELARVPPAIVQCFYGENEKDTLCPSLTKTGVEVIRTSGDHHFGG DYHSLEQRILSAFRKQSGVRD
Sequences:
>Translated_421_residues MTLHPFFRLAVAAGLVTGGALALAATTTVAGGRYGDVTVTRPAGPLRGFVVLYSQAGGWSAADQQSADALARAGALTVGV DTARYAANLAAKKEACHQLVGDAEALSHQLERQSQSSHYFAPIVAGTGQGATLAMRVLEQAPSNTIAGAVAVDAERTLDP RFQPCPPDPTVIRDKVPGFVEKAATGSADRTRLVALVTPHLQAVSTSDDDVSDLPLIELPAAHPNGLMAIVISGDGGWRD LDKTIAQALQKDGVSVIGWDSLRYFWSEKPPAQTSRDLARVMQTYGARWNAQHIALIGYSFGADVMPFAYNRLPAALRAK VSLIALLGFAPDADFQIRVGGWLGMPASDKALKVQPELARVPPAIVQCFYGENEKDTLCPSLTKTGVEVIRTSGDHHFGG DYHSLEQRILSAFRKQSGVRD >Mature_420_residues TLHPFFRLAVAAGLVTGGALALAATTTVAGGRYGDVTVTRPAGPLRGFVVLYSQAGGWSAADQQSADALARAGALTVGVD TARYAANLAAKKEACHQLVGDAEALSHQLERQSQSSHYFAPIVAGTGQGATLAMRVLEQAPSNTIAGAVAVDAERTLDPR FQPCPPDPTVIRDKVPGFVEKAATGSADRTRLVALVTPHLQAVSTSDDDVSDLPLIELPAAHPNGLMAIVISGDGGWRDL DKTIAQALQKDGVSVIGWDSLRYFWSEKPPAQTSRDLARVMQTYGARWNAQHIALIGYSFGADVMPFAYNRLPAALRAKV SLIALLGFAPDADFQIRVGGWLGMPASDKALKVQPELARVPPAIVQCFYGENEKDTLCPSLTKTGVEVIRTSGDHHFGGD YHSLEQRILSAFRKQSGVRD
Specific function: Unknown
COG id: COG3946
COG function: function code U; Type IV secretory pathway, VirJ component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44704; Mature: 44573
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLHPFFRLAVAAGLVTGGALALAATTTVAGGRYGDVTVTRPAGPLRGFVVLYSQAGGWS CCCCHHHHHHHHHHHHCCCCEEEEEHHEECCCCCCCEEEECCCCCCCEEEEEEECCCCCC AADQQSADALARAGALTVGVDTARYAANLAAKKEACHQLVGDAEALSHQLERQSQSSHYF CCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEE APIVAGTGQGATLAMRVLEQAPSNTIAGAVAVDAERTLDPRFQPCPPDPTVIRDKVPGFV EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEHHCCCHHH EKAATGSADRTRLVALVTPHLQAVSTSDDDVSDLPLIELPAAHPNGLMAIVISGDGGWRD HHHCCCCCCCEEEEEEECCCHHEECCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCHH LDKTIAQALQKDGVSVIGWDSLRYFWSEKPPAQTSRDLARVMQTYGARWNAQHIALIGYS HHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC FGADVMPFAYNRLPAALRAKVSLIALLGFAPDADFQIRVGGWLGMPASDKALKVQPELAR CCCCCHHHHHHHCCHHHHHHHHHHHHEECCCCCCEEEEECCEECCCCCCCCEEECCHHHH VPPAIVQCFYGENEKDTLCPSLTKTGVEVIRTSGDHHFGGDYHSLEQRILSAFRKQSGVR CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC D C >Mature Secondary Structure TLHPFFRLAVAAGLVTGGALALAATTTVAGGRYGDVTVTRPAGPLRGFVVLYSQAGGWS CCCHHHHHHHHHHHHCCCCEEEEEHHEECCCCCCCEEEECCCCCCCEEEEEEECCCCCC AADQQSADALARAGALTVGVDTARYAANLAAKKEACHQLVGDAEALSHQLERQSQSSHYF CCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEE APIVAGTGQGATLAMRVLEQAPSNTIAGAVAVDAERTLDPRFQPCPPDPTVIRDKVPGFV EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEHHCCCHHH EKAATGSADRTRLVALVTPHLQAVSTSDDDVSDLPLIELPAAHPNGLMAIVISGDGGWRD HHHCCCCCCCEEEEEEECCCHHEECCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCHH LDKTIAQALQKDGVSVIGWDSLRYFWSEKPPAQTSRDLARVMQTYGARWNAQHIALIGYS HHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC FGADVMPFAYNRLPAALRAKVSLIALLGFAPDADFQIRVGGWLGMPASDKALKVQPELAR CCCCCHHHHHHHCCHHHHHHHHHHHHEECCCCCCEEEEECCEECCCCCCCCEEECCHHHH VPPAIVQCFYGENEKDTLCPSLTKTGVEVIRTSGDHHFGGDYHSLEQRILSAFRKQSGVR CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC D C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA