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The map label for this gene is ydhC [H]

Identifier: 91783769

GI number: 91783769

Start: 2665726

End: 2666502

Strand: Reverse

Name: ydhC [H]

Synonym: Bxe_A2045

Alternate gene names: 91783769

Gene position: 2666502-2665726 (Counterclockwise)

Preceding gene: 91783770

Following gene: 91783768

Centisome position: 54.46

GC content: 58.17

Gene sequence:

>777_bases
GTGTTGACATTTTTCAGGGTGCACCCTAGACTCGTTTTCATGGAAACTGATCACATCTCCCCCACCGTCTCGCTGGCTGA
CTTCCGGGCGCACACATTGACCGGCGTGGTTCAGCACGAGATCGAGCGAATGATTCTGAGCGGCGAATTGAAGCCGGGTC
AGCGGCTCAATGAGAAGGCGGTCGCAGACAGGCTTTCTGTGAGCCGCGGGCCCGTGCGTGAGGCGTGCCGCGCGCTCGCC
GAACTCGGCCTCGTGTATCTGATCCCGCAGCGTGGCGTATTCATTCAGCGTGTCACACGTGACGACGCAATTGAAGTCTA
CGATTTGCGCGCGGGACTCACGGCATTGTCGGCATCGCTGCTCGCGCCGCTAATGACCGAAGAGATGGCCACCCAGCTTG
ACGCTTATGTCGACGAGATGCAGGAGGCCGCGCAAAAAGGGGATTTTTCGCGGTTCGATCCACTAAACCTCGAATTCCAC
GACTACATCGTGCGTTCAACCGGTAACTCGCGGCTGATCAAGCTCTATCGCGGCTTTGTTAAGGAATTTCATCTGTTCCG
GGTTCACGGAATGGTTCAGCGTGGCGCGTTGCTTCAGTCGAATGACGAGCATCGCGAGATCGTCAATGCGCTCAAATCCC
GCAACGCCAGCCTGAGCTATGAGACGAGTTTCAGCCACGTGTCGAAGGGGAAGGAACGCATGCTCGTCGCGTTGGACGGT
CTGGTGAAATCCGGAGAAGAAAACGCCGTGCCGCCCGCCGCCGATCAGCTCGCCTGA

Upstream 100 bases:

>100_bases
CTGATTTCAGATGGGGCTGGCGTGAAAATGTCAGTGAGATGGCAGGGGCGTCAGGCCCGCCGCACGGGCCTTCGACAGAG
ACGGGATCAGGAAAAGTAAA

Downstream 100 bases:

>100_bases
CAAAGGCGGGCGCGCACAAAAAAACCGAAGCAGGACCGCGCGAAGAGTGCGCGGATCGATGACCGCCCAACGTTGCGTCG
GGCGCATGATTATTATTTTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLTFFRVHPRLVFMETDHISPTVSLADFRAHTLTGVVQHEIERMILSGELKPGQRLNEKAVADRLSVSRGPVREACRALA
ELGLVYLIPQRGVFIQRVTRDDAIEVYDLRAGLTALSASLLAPLMTEEMATQLDAYVDEMQEAAQKGDFSRFDPLNLEFH
DYIVRSTGNSRLIKLYRGFVKEFHLFRVHGMVQRGALLQSNDEHREIVNALKSRNASLSYETSFSHVSKGKERMLVALDG
LVKSGEENAVPPAADQLA

Sequences:

>Translated_258_residues
MLTFFRVHPRLVFMETDHISPTVSLADFRAHTLTGVVQHEIERMILSGELKPGQRLNEKAVADRLSVSRGPVREACRALA
ELGLVYLIPQRGVFIQRVTRDDAIEVYDLRAGLTALSASLLAPLMTEEMATQLDAYVDEMQEAAQKGDFSRFDPLNLEFH
DYIVRSTGNSRLIKLYRGFVKEFHLFRVHGMVQRGALLQSNDEHREIVNALKSRNASLSYETSFSHVSKGKERMLVALDG
LVKSGEENAVPPAADQLA
>Mature_258_residues
MLTFFRVHPRLVFMETDHISPTVSLADFRAHTLTGVVQHEIERMILSGELKPGQRLNEKAVADRLSVSRGPVREACRALA
ELGLVYLIPQRGVFIQRVTRDDAIEVYDLRAGLTALSASLLAPLMTEEMATQLDAYVDEMQEAAQKGDFSRFDPLNLEFH
DYIVRSTGNSRLIKLYRGFVKEFHLFRVHGMVQRGALLQSNDEHREIVNALKSRNASLSYETSFSHVSKGKERMLVALDG
LVKSGEENAVPPAADQLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=125, Percent_Identity=30.4, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28950; Mature: 28950

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFFRVHPRLVFMETDHISPTVSLADFRAHTLTGVVQHEIERMILSGELKPGQRLNEKA
CCEEEEECCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VADRLSVSRGPVREACRALAELGLVYLIPQRGVFIQRVTRDDAIEVYDLRAGLTALSASL
HHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCEEEEEECCCCCEEEHHHHHHHHHHHHHH
LAPLMTEEMATQLDAYVDEMQEAAQKGDFSRFDPLNLEFHDYIVRSTGNSRLIKLYRGFV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHH
KEFHLFRVHGMVQRGALLQSNDEHREIVNALKSRNASLSYETSFSHVSKGKERMLVALDG
HHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCCEECCCHHHHHCCHHHHHHHHHH
LVKSGEENAVPPAADQLA
HHHCCCCCCCCCCHHCCC
>Mature Secondary Structure
MLTFFRVHPRLVFMETDHISPTVSLADFRAHTLTGVVQHEIERMILSGELKPGQRLNEKA
CCEEEEECCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VADRLSVSRGPVREACRALAELGLVYLIPQRGVFIQRVTRDDAIEVYDLRAGLTALSASL
HHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCEEEEEECCCCCEEEHHHHHHHHHHHHHH
LAPLMTEEMATQLDAYVDEMQEAAQKGDFSRFDPLNLEFHDYIVRSTGNSRLIKLYRGFV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHH
KEFHLFRVHGMVQRGALLQSNDEHREIVNALKSRNASLSYETSFSHVSKGKERMLVALDG
HHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCCEECCCHHHHHCCHHHHHHHHHH
LVKSGEENAVPPAADQLA
HHHCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]