| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
Click here to switch to the map view.
The map label for this gene is cbdA [H]
Identifier: 91783709
GI number: 91783709
Start: 2603471
End: 2604754
Strand: Direct
Name: cbdA [H]
Synonym: Bxe_A2105
Alternate gene names: 91783709
Gene position: 2603471-2604754 (Clockwise)
Preceding gene: 91783707
Following gene: 91783710
Centisome position: 53.18
GC content: 62.54
Gene sequence:
>1284_bases ATGAGCGAATCCCCGTATCAGAGCGTCGACGCGAGCGCGTTGTATCAGCGCGCGCAGTCCGATCGCGTGGCCCCGTCGCT GTACTACGACCCTGCCGTTTTCGAAGCGGAACTCGAACGCATTTTCTACAAGACATGGGTCTGGGTCGCGCACGAAAGCG AATTGCCGGATCCGGGCGACTTCCGCACCACCACGATCGGCCGTCAGCCGGTGATCGTGGTGCGCGACAAGACCGGCGCG GTCAACGTATTGCAGAACCGCTGCCGCCACCGCGGCGCAACCGTCTGCGAACAGCACAAGGGCAACGCCAAAGGCTTCAC GTGCCCTTATCACAGCTGGACCTATGGTCTCGACGGCGCACTGCGCGCACTGCCGTACGGCGACGGTTACGAAGGCGTGA TCGACAAGACCGAGCTGCCGCTCGCCAGCCTGCGCGTGGGCATCTATCAAGGCCTGATCTTCGCGAGCTTCAATCAGGAG ATCGAGCCGCTCGAAGATTTCCTCGGCGGTGCGAAACCGTGGATCGACCTGTTCATGAAGCAAGGCGCCGGCTATCCGGT CAAGACCAACGGCGAGCATCGCTTTCGCTTTAACGGCAACTGGAAGATCCAGCTCGAGAACACCACGGATCTGTATCACT TCCCCGTGGTCCACAAGTCGTGGCTGAAATCGATCGACGAGGAAACCACCGCCGCGATCACGAGCTTCATGACAAGCGAC CAGGCTTTCTGCCGTTCGCTCGGCAACGGCCACAGCCTCGCCGTGCTGATGCCGGAACTAGTCGATCTCGACCGCGATGA CGGCGCGCCGATCCCCGAGCGCTTCACAGAGCTGGCCGCGTCACTCGCAAAAGACCACACGCCGGAACAAGTGCGCCGTA TCGTGCGCTCGCTGATGGGCGTCGGCTTCAATCTGAATCTGTTTCCGAACCTCGCGCTGTCGATGGCGTTTTTCCGCGTA CTGCGGCCCATTTCCGCGAACGAGACCGAGATCCGTCATGTCGCCCTCGCAATGGACGGCGGCCCCGAAGAAGCGAACCG TGTGCGCCTGCGCATTCACGAACACTTCCAGGGCCCGTTCGGTTTCGGCAGTCCGGACGACGCCGAAGCGTGGGAACGCG TGCAGCGCGGCTCGCACGCCGGCCCCGATCTGCCGATTCTCGTCAACCGTGGCCTGAATCGCGAGAGCACGGCGCCGAAT GGCGAAAAAACCGCCCACGCCACGGACGAAACCGGCATGCGCGAAGCTTACGCGCAATGGCGCACGATGATGGAGCAGGC ATGA
Upstream 100 bases:
>100_bases ATATCCATGCGGTTGATTTTATATTTCATTTTAGATCAATTTGACGCATATCAACGGGTCGGCGAGACTGGCCTTCATCC ACCACCCCACCTGCATAGCC
Downstream 100 bases:
>100_bases TGGACGACAGGAACACGCTGTTTTCGCAGAAGACATTCACCGGCGCGATCGAACTCATCTGGCGCGAAGCGGAACTGCTG GACCGCAAGGACTATCGCGA
Product: putative (poly)aromatic ring hydroxylating dioxygenase, alpha subunit (Rieske (2Fe-2S) region)
Products: NA
Alternate protein names: 2-chlorobenzoate 1,2-dioxygenase [H]
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MSESPYQSVDASALYQRAQSDRVAPSLYYDPAVFEAELERIFYKTWVWVAHESELPDPGDFRTTTIGRQPVIVVRDKTGA VNVLQNRCRHRGATVCEQHKGNAKGFTCPYHSWTYGLDGALRALPYGDGYEGVIDKTELPLASLRVGIYQGLIFASFNQE IEPLEDFLGGAKPWIDLFMKQGAGYPVKTNGEHRFRFNGNWKIQLENTTDLYHFPVVHKSWLKSIDEETTAAITSFMTSD QAFCRSLGNGHSLAVLMPELVDLDRDDGAPIPERFTELAASLAKDHTPEQVRRIVRSLMGVGFNLNLFPNLALSMAFFRV LRPISANETEIRHVALAMDGGPEEANRVRLRIHEHFQGPFGFGSPDDAEAWERVQRGSHAGPDLPILVNRGLNRESTAPN GEKTAHATDETGMREAYAQWRTMMEQA
Sequences:
>Translated_427_residues MSESPYQSVDASALYQRAQSDRVAPSLYYDPAVFEAELERIFYKTWVWVAHESELPDPGDFRTTTIGRQPVIVVRDKTGA VNVLQNRCRHRGATVCEQHKGNAKGFTCPYHSWTYGLDGALRALPYGDGYEGVIDKTELPLASLRVGIYQGLIFASFNQE IEPLEDFLGGAKPWIDLFMKQGAGYPVKTNGEHRFRFNGNWKIQLENTTDLYHFPVVHKSWLKSIDEETTAAITSFMTSD QAFCRSLGNGHSLAVLMPELVDLDRDDGAPIPERFTELAASLAKDHTPEQVRRIVRSLMGVGFNLNLFPNLALSMAFFRV LRPISANETEIRHVALAMDGGPEEANRVRLRIHEHFQGPFGFGSPDDAEAWERVQRGSHAGPDLPILVNRGLNRESTAPN GEKTAHATDETGMREAYAQWRTMMEQA >Mature_426_residues SESPYQSVDASALYQRAQSDRVAPSLYYDPAVFEAELERIFYKTWVWVAHESELPDPGDFRTTTIGRQPVIVVRDKTGAV NVLQNRCRHRGATVCEQHKGNAKGFTCPYHSWTYGLDGALRALPYGDGYEGVIDKTELPLASLRVGIYQGLIFASFNQEI EPLEDFLGGAKPWIDLFMKQGAGYPVKTNGEHRFRFNGNWKIQLENTTDLYHFPVVHKSWLKSIDEETTAAITSFMTSDQ AFCRSLGNGHSLAVLMPELVDLDRDDGAPIPERFTELAASLAKDHTPEQVRRIVRSLMGVGFNLNLFPNLALSMAFFRVL RPISANETEIRHVALAMDGGPEEANRVRLRIHEHFQGPFGFGSPDDAEAWERVQRGSHAGPDLPILVNRGLNRESTAPNG EKTAHATDETGMREAYAQWRTMMEQA
Specific function: Component of 2-halobenzoate dioxygenase multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into 2-halobenzoate to form catechol [H]
COG id: COG4638
COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Rieske domain [H]
Homologues:
Organism=Escherichia coli, GI1788888, Length=442, Percent_Identity=29.185520361991, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI1788103, Length=201, Percent_Identity=28.3582089552239, Blast_Score=90, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017941 - InterPro: IPR015881 - InterPro: IPR015879 - InterPro: IPR001663 [H]
Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]
EC number: =1.14.12.13 [H]
Molecular weight: Translated: 47900; Mature: 47769
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS00570 RING_HYDROXYL_ALPHA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESPYQSVDASALYQRAQSDRVAPSLYYDPAVFEAELERIFYKTWVWVAHESELPDPGD CCCCCCCCCCHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHEEEEECCCCCCCCC FRTTTIGRQPVIVVRDKTGAVNVLQNRCRHRGATVCEQHKGNAKGFTCPYHSWTYGLDGA CEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCCCCCCCH LRALPYGDGYEGVIDKTELPLASLRVGIYQGLIFASFNQEIEPLEDFLGGAKPWIDLFMK HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH QGAGYPVKTNGEHRFRFNGNWKIQLENTTDLYHFPVVHKSWLKSIDEETTAAITSFMTSD CCCCCCEECCCCEEEEECCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCH QAFCRSLGNGHSLAVLMPELVDLDRDDGAPIPERFTELAASLAKDHTPEQVRRIVRSLMG HHHHHHCCCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC VGFNLNLFPNLALSMAFFRVLRPISANETEIRHVALAMDGGPEEANRVRLRIHEHFQGPF CCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCC GFGSPDDAEAWERVQRGSHAGPDLPILVNRGLNRESTAPNGEKTAHATDETGMREAYAQW CCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH RTMMEQA HHHHHCC >Mature Secondary Structure SESPYQSVDASALYQRAQSDRVAPSLYYDPAVFEAELERIFYKTWVWVAHESELPDPGD CCCCCCCCCHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHEEEEECCCCCCCCC FRTTTIGRQPVIVVRDKTGAVNVLQNRCRHRGATVCEQHKGNAKGFTCPYHSWTYGLDGA CEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCCCCCCCH LRALPYGDGYEGVIDKTELPLASLRVGIYQGLIFASFNQEIEPLEDFLGGAKPWIDLFMK HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH QGAGYPVKTNGEHRFRFNGNWKIQLENTTDLYHFPVVHKSWLKSIDEETTAAITSFMTSD CCCCCCEECCCCEEEEECCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCH QAFCRSLGNGHSLAVLMPELVDLDRDDGAPIPERFTELAASLAKDHTPEQVRRIVRSLMG HHHHHHCCCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC VGFNLNLFPNLALSMAFFRVLRPISANETEIRHVALAMDGGPEEANRVRLRIHEHFQGPF CCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCC GFGSPDDAEAWERVQRGSHAGPDLPILVNRGLNRESTAPNGEKTAHATDETGMREAYAQW CCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH RTMMEQA HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7530709; 1370284 [H]