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The map label for this gene is catR [C]

Identifier: 91783707

GI number: 91783707

Start: 2601535

End: 2602422

Strand: Direct

Name: catR [C]

Synonym: Bxe_A2107

Alternate gene names: 91783707

Gene position: 2601535-2602422 (Clockwise)

Preceding gene: 91783703

Following gene: 91783709

Centisome position: 53.14

GC content: 64.86

Gene sequence:

>888_bases
ATGGAACTTCGCCAACTCCGCTATTTCATCGCGGTCGCGGAAGAAATGAACATCACGCGGGCCGCCAATCGCCTGCACAT
GACGCAGCCGCCGCTCAGCCGGCAGATCCAGCAGATCGAAGAAAACGTCGGCCTGCCGCTGTTCGAACGCGGCTCGCGGC
CATTGCGGCTGACCGAAGCCGGCCGCATTTTCTATGCGCAGGCAAAGCGCCTGATCGATGAAGCGGACGAGCTCGCCCCG
CTCACGCGGCGCCTCGCGCAACTGGCCGAGCGCGTCGTGATCGGCTTCGTGCCGTCGACGCTTTATGGCGCGCTGCCCGC
CGTGATCCGTGCGTTTCGTGAAGCCGCGCCGCATATCGAGCTCTCGCTGATCGAAATGTTCACGATCGAGCAGCTCGGGG
CGCTCAAGGGCGGCCGCATCGACGTTGGCTTCGGGCGCCTGCGCTTCGACGACGCGCAACTCGCGCGCGAAGTCCTCGTC
GAAGAACGGATGATTGCGGCGCTGCCGCAAGACCATCCGCTGGCGCGCCAGAAGAAGGCGCTGACATTGGCGGCGCTCGC
GCAGGAAACCCTGATCGTCTATCCGAGCACGCCGCGGCCGAGCTATGCCGACCAGCAGCTATCGGCCATGCACGATCATG
CATTGGAGCCGAAGGCGATCCATGAAGTGCGGGAATTGCAGACCGCGTTGGGTCTGGTCGCGGCGCAGGTGGGCGTGTGC
CTGGTGCCGGAGAGCGTGGAGGGTTTGCGCGCGCACGGCGTGGTGTACCGGCCGATTCCGGCGGCCAACGTTGCTTCGCC
GATCATCATGAGCCGCCGTTTGCAGGACGAATCGCCGACCACCACGTTGCTCTGTTCGCTCGCACGTGAGCTGTTCAAAC
GGGTTTGA

Upstream 100 bases:

>100_bases
TGCCCTCCTGAACTGCCTGACCGGGAGCCCCCATATTAGAAACAAACCCGCGAAGCAGTCCAACACCGATTCCGACTACT
TCCATACCTTAGAGGTATGC

Downstream 100 bases:

>100_bases
CGAGATTTAACCGGGCCGCGCGGTCACTTCCCATCGAAGTGCCGCACGATATCCGCCATCAGGTTGCGCAGCCACACGTT
GCCCTCGTCCTGATCGAAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORFR1 [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MELRQLRYFIAVAEEMNITRAANRLHMTQPPLSRQIQQIEENVGLPLFERGSRPLRLTEAGRIFYAQAKRLIDEADELAP
LTRRLAQLAERVVIGFVPSTLYGALPAVIRAFREAAPHIELSLIEMFTIEQLGALKGGRIDVGFGRLRFDDAQLAREVLV
EERMIAALPQDHPLARQKKALTLAALAQETLIVYPSTPRPSYADQQLSAMHDHALEPKAIHEVRELQTALGLVAAQVGVC
LVPESVEGLRAHGVVYRPIPAANVASPIIMSRRLQDESPTTTLLCSLARELFKRV

Sequences:

>Translated_295_residues
MELRQLRYFIAVAEEMNITRAANRLHMTQPPLSRQIQQIEENVGLPLFERGSRPLRLTEAGRIFYAQAKRLIDEADELAP
LTRRLAQLAERVVIGFVPSTLYGALPAVIRAFREAAPHIELSLIEMFTIEQLGALKGGRIDVGFGRLRFDDAQLAREVLV
EERMIAALPQDHPLARQKKALTLAALAQETLIVYPSTPRPSYADQQLSAMHDHALEPKAIHEVRELQTALGLVAAQVGVC
LVPESVEGLRAHGVVYRPIPAANVASPIIMSRRLQDESPTTTLLCSLARELFKRV
>Mature_295_residues
MELRQLRYFIAVAEEMNITRAANRLHMTQPPLSRQIQQIEENVGLPLFERGSRPLRLTEAGRIFYAQAKRLIDEADELAP
LTRRLAQLAERVVIGFVPSTLYGALPAVIRAFREAAPHIELSLIEMFTIEQLGALKGGRIDVGFGRLRFDDAQLAREVLV
EERMIAALPQDHPLARQKKALTLAALAQETLIVYPSTPRPSYADQQLSAMHDHALEPKAIHEVRELQTALGLVAAQVGVC
LVPESVEGLRAHGVVYRPIPAANVASPIIMSRRLQDESPTTTLLCSLARELFKRV

Specific function: Probable positive regulator of the cat1 operon which encode enzymes responsible for the degradation of catechol to acetyl-CoA via the beta-ketoadipate pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=272, Percent_Identity=36.0294117647059, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1788887, Length=266, Percent_Identity=34.2105263157895, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI2367136, Length=265, Percent_Identity=31.6981132075472, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693105, Length=269, Percent_Identity=28.996282527881, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1790399, Length=262, Percent_Identity=29.3893129770992, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081904, Length=278, Percent_Identity=28.7769784172662, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787601, Length=302, Percent_Identity=26.8211920529801, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI157672245, Length=261, Percent_Identity=31.4176245210728, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788296, Length=202, Percent_Identity=33.6633663366337, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788297, Length=250, Percent_Identity=26.8, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787806, Length=264, Percent_Identity=26.5151515151515, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790262, Length=260, Percent_Identity=26.1538461538462, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787530, Length=199, Percent_Identity=27.6381909547739, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789204, Length=276, Percent_Identity=27.1739130434783, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=130, Percent_Identity=33.8461538461538, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082132, Length=180, Percent_Identity=31.6666666666667, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788481, Length=178, Percent_Identity=27.5280898876405, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789173, Length=121, Percent_Identity=33.0578512396694, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32854; Mature: 32854

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRQLRYFIAVAEEMNITRAANRLHMTQPPLSRQIQQIEENVGLPLFERGSRPLRLTEA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHCCCCCEEEECC
GRIFYAQAKRLIDEADELAPLTRRLAQLAERVVIGFVPSTLYGALPAVIRAFREAAPHIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
LSLIEMFTIEQLGALKGGRIDVGFGRLRFDDAQLAREVLVEERMIAALPQDHPLARQKKA
HHHHHHHHHHHHHCCCCCEEEECCCCEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LTLAALAQETLIVYPSTPRPSYADQQLSAMHDHALEPKAIHEVRELQTALGLVAAQVGVC
HHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCE
LVPESVEGLRAHGVVYRPIPAANVASPIIMSRRLQDESPTTTLLCSLARELFKRV
ECCCCHHHHHHCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELRQLRYFIAVAEEMNITRAANRLHMTQPPLSRQIQQIEENVGLPLFERGSRPLRLTEA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHCCCCCEEEECC
GRIFYAQAKRLIDEADELAPLTRRLAQLAERVVIGFVPSTLYGALPAVIRAFREAAPHIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
LSLIEMFTIEQLGALKGGRIDVGFGRLRFDDAQLAREVLVEERMIAALPQDHPLARQKKA
HHHHHHHHHHHHHCCCCCEEEECCCCEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LTLAALAQETLIVYPSTPRPSYADQQLSAMHDHALEPKAIHEVRELQTALGLVAAQVGVC
HHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCE
LVPESVEGLRAHGVVYRPIPAANVASPIIMSRRLQDESPTTTLLCSLARELFKRV
ECCCCHHHHHHCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473520 [H]