Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 91783699

GI number: 91783699

Start: 2593795

End: 2594679

Strand: Direct

Name: rbcR [H]

Synonym: Bxe_A2115

Alternate gene names: 91783699

Gene position: 2593795-2594679 (Clockwise)

Preceding gene: 91783696

Following gene: 91783702

Centisome position: 52.98

GC content: 65.88

Gene sequence:

>885_bases
GTGCAATACGCGCAATTGCGGGCGTTTCATGCGGTCGCGGAACATGGTGGCTTTTCCAAAGCGGCGCAGGCGCTCTCGCT
CACCCAGCCGGCCGTGTCGGATCACGTGCGGCGGCTGGAACAGGATTACGGCGTCAAGCTGTTCGAGCGCGGGCCGCGCG
GCGTCGCGACCACGGAACTCGGTCTGCGCCTTTTCAGCGTGACGCGGCAGATGCTCAGTTGCGAGCGCGACGCGCGGCAA
CTGCTCGAATCTGCGGGCGGGCTCGAATCCGGCTCGCTCTCGCTGGCAGCGGACGCGCCCGATCTGGCGGTCGCGCTGAT
CAGCGCGTTTCGCAAGCTGCATCCGGGAATCGTCGTGACGCTGTCCATCGCCAACGCCGCGGATTGCATGCAGCGCGTGC
TGGCGAGCGCCGTGGACGCGGCCATTACCGCCGCGCCGCAGGTGCATAGCCGGCTGGAAGCACGCGTATTGCGGCGCGAT
CCGCTGGTGGCAATGGTGCCGGCCAGCTACCCGGTGGCGAAGAAACGCAAGCTGAGCTACGCGGAACTGGTGCGGCAGCC
AATGATCTTCCGCGAGGCGCAATCCGTCACGCAACAACTGCTCGAGACCGAACTGGTGCGCGAATCGCTGCAAGTGGAAC
CGGTGATGTACGTGGACGGCCGCGAGGCGCTCGAAGAAGCGGTCGCGCAAGGCATGGGCGTGGGCGTGATCGCGCGCGCC
GAATTCAACGAATCGCGGCGCATCAGAATGATTCCGCTACAGGACTGCCGGGTGCAGATGATCGAATCGCTGACACGGCT
CGCGGAGCGGCCGGGATCGAATCTGCTGGACGCATTGTTTGCGGTGGAGTTGACGAAGCCGGCTCCGGCTACCTCCGCCC
GATAA

Upstream 100 bases:

>100_bases
TTCATTTGGGTATCTCACACAGTACAGAAACACGCTGCATCGGTAAAATCGATATAATCGATGCTGATATCGTAATAACT
TATACCCCAGCGAGGCACAC

Downstream 100 bases:

>100_bases
AACCGACAGCCGCCCGGCAGGCGCAGCCTGCGGGCGGCTTTTCTTCATGCCGCACGATGAGGCGTGACGCTATCGCGCTG
CGCCACGCGCCTTCGCGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQYAQLRAFHAVAEHGGFSKAAQALSLTQPAVSDHVRRLEQDYGVKLFERGPRGVATTELGLRLFSVTRQMLSCERDARQ
LLESAGGLESGSLSLAADAPDLAVALISAFRKLHPGIVVTLSIANAADCMQRVLASAVDAAITAAPQVHSRLEARVLRRD
PLVAMVPASYPVAKKRKLSYAELVRQPMIFREAQSVTQQLLETELVRESLQVEPVMYVDGREALEEAVAQGMGVGVIARA
EFNESRRIRMIPLQDCRVQMIESLTRLAERPGSNLLDALFAVELTKPAPATSAR

Sequences:

>Translated_294_residues
MQYAQLRAFHAVAEHGGFSKAAQALSLTQPAVSDHVRRLEQDYGVKLFERGPRGVATTELGLRLFSVTRQMLSCERDARQ
LLESAGGLESGSLSLAADAPDLAVALISAFRKLHPGIVVTLSIANAADCMQRVLASAVDAAITAAPQVHSRLEARVLRRD
PLVAMVPASYPVAKKRKLSYAELVRQPMIFREAQSVTQQLLETELVRESLQVEPVMYVDGREALEEAVAQGMGVGVIARA
EFNESRRIRMIPLQDCRVQMIESLTRLAERPGSNLLDALFAVELTKPAPATSAR
>Mature_294_residues
MQYAQLRAFHAVAEHGGFSKAAQALSLTQPAVSDHVRRLEQDYGVKLFERGPRGVATTELGLRLFSVTRQMLSCERDARQ
LLESAGGLESGSLSLAADAPDLAVALISAFRKLHPGIVVTLSIANAADCMQRVLASAVDAAITAAPQVHSRLEARVLRRD
PLVAMVPASYPVAKKRKLSYAELVRQPMIFREAQSVTQQLLETELVRESLQVEPVMYVDGREALEEAVAQGMGVGVIARA
EFNESRRIRMIPLQDCRVQMIESLTRLAERPGSNLLDALFAVELTKPAPATSAR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=239, Percent_Identity=26.3598326359833, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787879, Length=254, Percent_Identity=28.3464566929134, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788481, Length=236, Percent_Identity=27.5423728813559, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790208, Length=245, Percent_Identity=27.3469387755102, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=229, Percent_Identity=26.6375545851528, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=268, Percent_Identity=30.2238805970149, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082132, Length=238, Percent_Identity=26.890756302521, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=23.3606557377049, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=187, Percent_Identity=26.2032085561497, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=25, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786401, Length=313, Percent_Identity=27.1565495207668, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32066; Mature: 32066

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYAQLRAFHAVAEHGGFSKAAQALSLTQPAVSDHVRRLEQDYGVKLFERGPRGVATTEL
CCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHH
GLRLFSVTRQMLSCERDARQLLESAGGLESGSLSLAADAPDLAVALISAFRKLHPGIVVT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEE
LSIANAADCMQRVLASAVDAAITAAPQVHSRLEARVLRRDPLVAMVPASYPVAKKRKLSY
EECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCHH
AELVRQPMIFREAQSVTQQLLETELVRESLQVEPVMYVDGREALEEAVAQGMGVGVIARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEEC
EFNESRRIRMIPLQDCRVQMIESLTRLAERPGSNLLDALFAVELTKPAPATSAR
CCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQYAQLRAFHAVAEHGGFSKAAQALSLTQPAVSDHVRRLEQDYGVKLFERGPRGVATTEL
CCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHH
GLRLFSVTRQMLSCERDARQLLESAGGLESGSLSLAADAPDLAVALISAFRKLHPGIVVT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEE
LSIANAADCMQRVLASAVDAAITAAPQVHSRLEARVLRRDPLVAMVPASYPVAKKRKLSY
EECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCHH
AELVRQPMIFREAQSVTQQLLETELVRESLQVEPVMYVDGREALEEAVAQGMGVGVIARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEEC
EFNESRRIRMIPLQDCRVQMIESLTRLAERPGSNLLDALFAVELTKPAPATSAR
CCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]