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The map label for this gene is ywbI [H]

Identifier: 91783702

GI number: 91783702

Start: 2596818

End: 2597702

Strand: Direct

Name: ywbI [H]

Synonym: Bxe_A2112

Alternate gene names: 91783702

Gene position: 2596818-2597702 (Clockwise)

Preceding gene: 91783699

Following gene: 91783703

Centisome position: 53.04

GC content: 67.57

Gene sequence:

>885_bases
ATGCGCTTCGACCTGATCGACCTACGCCTCTTTCTGCATATCCTCGAAACCGGCAGCATCACGCACGGCGCGGCGCGCGC
GAACATGTCGCTGCCCTCGGCGAGCGCGCGGCTGCGCGGCATGGAAGACGCACTCGGCATGCCGCTGCTCGAACGCGGCC
GGCGCGGCGTCGAATCCACGCCGACCGGCGACACGCTCGCGCATCACGCGCGGCTCGTGCTCGGACAGATCGAAAGAATG
CAGGGCGAACTGGGCGAGCATCAGGAAGGCCGCAAGGCCTGCATACGGCTGTGGACCAACACGGCGGCCATCACCGAGTT
CCTGCCGGCCGCGATCGGTCTCTTTCTGCGCGATCACCCGAACGTGCAGATCGACCTGAAGGAGCGGCAAAGCAGCGAAA
CGGTCAAGGCGGTGCTGAGCGGCGCGGCTGAAATCGGCATCATTTCCGATGCGGTCGAACACGGCGCGTTGCAGACCTTC
CCCTTCGCCATCGACAAACTGGTGCTCGTCACGAGCCGTGACGATGCGCTCGCCACATGCCGCCGTACGACGCTGGCCGA
AGTGGCGGACCGGGAGTTCATCGGGCTGAGCGCGGACAGCGCGTTGCAGGCCTACCTCGGCGAGCGCGCGCTGCTGGCGG
GCCAGCCGCTCAGCTTCCGCACCCACGTGCGGACCTTCGACGCCGTGTGCTGCATGGTCGACCAGGGCGCCGGAGTGGGT
ATCGTGCCGGCCACGGCGGCGAAGCGCTATCGCGGCACGCCCGGCATCCGCACGATCGAGCTGACCGATAGCTGGGCCAC
GCGCCAGTTGCTGATCTGCATGCGCGACCTGAACGCGATGGCGCGGCCGGAAAAGGCGCTTGTCCGGCATCTGGCCGGGA
TTTGA

Upstream 100 bases:

>100_bases
AATCGCCGCAAGGCCGGCCACAATGCGTAAGATACTTACCGTGACTTAGGCTGGGGCTAAGGCACGCGCCCCCGTGAAAC
CGCACCTCCACTTGCTCTCC

Downstream 100 bases:

>100_bases
AATGCGCGCCCCAGGGGCGATACTGAGCCGGTCGCGCACTTTGAATTATCAGCCTGATTTATCTGACTGACCATTTTTAA
TCGATTTGCCTGATTTGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRFDLIDLRLFLHILETGSITHGAARANMSLPSASARLRGMEDALGMPLLERGRRGVESTPTGDTLAHHARLVLGQIERM
QGELGEHQEGRKACIRLWTNTAAITEFLPAAIGLFLRDHPNVQIDLKERQSSETVKAVLSGAAEIGIISDAVEHGALQTF
PFAIDKLVLVTSRDDALATCRRTTLAEVADREFIGLSADSALQAYLGERALLAGQPLSFRTHVRTFDAVCCMVDQGAGVG
IVPATAAKRYRGTPGIRTIELTDSWATRQLLICMRDLNAMARPEKALVRHLAGI

Sequences:

>Translated_294_residues
MRFDLIDLRLFLHILETGSITHGAARANMSLPSASARLRGMEDALGMPLLERGRRGVESTPTGDTLAHHARLVLGQIERM
QGELGEHQEGRKACIRLWTNTAAITEFLPAAIGLFLRDHPNVQIDLKERQSSETVKAVLSGAAEIGIISDAVEHGALQTF
PFAIDKLVLVTSRDDALATCRRTTLAEVADREFIGLSADSALQAYLGERALLAGQPLSFRTHVRTFDAVCCMVDQGAGVG
IVPATAAKRYRGTPGIRTIELTDSWATRQLLICMRDLNAMARPEKALVRHLAGI
>Mature_294_residues
MRFDLIDLRLFLHILETGSITHGAARANMSLPSASARLRGMEDALGMPLLERGRRGVESTPTGDTLAHHARLVLGQIERM
QGELGEHQEGRKACIRLWTNTAAITEFLPAAIGLFLRDHPNVQIDLKERQSSETVKAVLSGAAEIGIISDAVEHGALQTF
PFAIDKLVLVTSRDDALATCRRTTLAEVADREFIGLSADSALQAYLGERALLAGQPLSFRTHVRTFDAVCCMVDQGAGVG
IVPATAAKRYRGTPGIRTIELTDSWATRQLLICMRDLNAMARPEKALVRHLAGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=264, Percent_Identity=24.6212121212121, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787879, Length=255, Percent_Identity=25.8823529411765, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787806, Length=289, Percent_Identity=22.4913494809689, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI157672245, Length=249, Percent_Identity=21.285140562249, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=293, Percent_Identity=23.5494880546075, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790399, Length=252, Percent_Identity=23.8095238095238, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787530, Length=223, Percent_Identity=25.5605381165919, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=297, Percent_Identity=22.8956228956229, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31981; Mature: 31981

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDLIDLRLFLHILETGSITHGAARANMSLPSASARLRGMEDALGMPLLERGRRGVEST
CCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHCCCHHHHCCHHHHHCCCCCCCC
PTGDTLAHHARLVLGQIERMQGELGEHQEGRKACIRLWTNTAAITEFLPAAIGLFLRDHP
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
NVQIDLKERQSSETVKAVLSGAAEIGIISDAVEHGALQTFPFAIDKLVLVTSRDDALATC
CEEEEEHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHEEEEEEECCCHHHHHH
RRTTLAEVADREFIGLSADSALQAYLGERALLAGQPLSFRTHVRTFDAVCCMVDQGAGVG
HHHHHHHHHCCHHCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHEEECCCCCE
IVPATAAKRYRGTPGIRTIELTDSWATRQLLICMRDLNAMARPEKALVRHLAGI
EECCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MRFDLIDLRLFLHILETGSITHGAARANMSLPSASARLRGMEDALGMPLLERGRRGVEST
CCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHCCCHHHHCCHHHHHCCCCCCCC
PTGDTLAHHARLVLGQIERMQGELGEHQEGRKACIRLWTNTAAITEFLPAAIGLFLRDHP
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
NVQIDLKERQSSETVKAVLSGAAEIGIISDAVEHGALQTFPFAIDKLVLVTSRDDALATC
CEEEEEHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHEEEEEEECCCHHHHHH
RRTTLAEVADREFIGLSADSALQAYLGERALLAGQPLSFRTHVRTFDAVCCMVDQGAGVG
HHHHHHHHHCCHHCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHEEECCCCCE
IVPATAAKRYRGTPGIRTIELTDSWATRQLLICMRDLNAMARPEKALVRHLAGI
EECCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]