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The map label for this gene is rcoM1

Identifier: 91783672

GI number: 91783672

Start: 2552861

End: 2553664

Strand: Direct

Name: rcoM1

Synonym: Bxe_A2142

Alternate gene names: 91783672

Gene position: 2552861-2553664 (Clockwise)

Preceding gene: 91783661

Following gene: 91783680

Centisome position: 52.14

GC content: 62.94

Gene sequence:

>804_bases
ATGAAATCGTCTGAGCCCGCTTCCGTATCGGCGGCCGAGCGCCGCGCGGAGACGTTCCAGCACAAGCTCGAGCAGTTCAA
TCCGGGGATCGTCTGGCTGGACCAGCACGGCCGCGTCACGGCATTCAACGACGTCGCGCTGCAAATTCTCGGGCCGGCCG
GCGAGCAATCGCTAGGCGTGGCGCAGGATAGTCTGTTCGGCATCGACGTGGTGCAACTGCACCCGGAGAAAAGCCGCGAC
AAGCTGCGCTTCCTGCTGCAGTCGAAAGACGTGGGTGGCTGCCCGGTCAAGTCGCCGCCGCCGGTGGCGATGATGATCAA
TATTCCCGACCGGATCCTGATGATCAAGGTGTCCAGCATGATCGCCGCCGGCGGCGCGTGCGGCACCTGCATGATCTTCT
ACGACGTCACCGATCTGACCACCGAGCCCTCCGGCCTGCCGGCGGGCGGCAGCGCGCCCTCGCCGAGGCGCCTCTTCAAG
ATTCCCGTGTACCGGAAGAACCGCGTGATCCTGCTCGATCTGAAAGACATCGTGCGCTTTCAGGGCGACGGCCACTACAC
GACGATCGTGACGCGGGACGACCGCTACCTGTCCAATCTTTCACTGGCCGATCTGGAGCTGCGTCTCGACAGCAGCATTT
ATCTGCGCGTTCATCGCAGCCATATCGTGAGCCTGCAATATGCGGTGGAGCTGGTCAAACTGGACGAGAGCGTCAATCTC
GTCATGGACGACGCGGAACAGACCCAGGTGCCGGTCAGCCGCTCGCGAACGGCGCAACTGAAGGAGCTTCTCGGCGTGGT
TTGA

Upstream 100 bases:

>100_bases
GAACGACCCGGAAATTTGCGCGAAAATCGGTAGATAGCGATACTGCAAGATAAAAATCGCCTGAGAGCGTGGACAGCCCC
ATGAGGACAGGAGAGCCCGC

Downstream 100 bases:

>100_bases
GAAGGTGTGGGCTTTCTCACCGCAGCCACTTGCGCACGTCCTTTTCCCACTCCGGATCGCCGCAGCCTTGCGGGTTTTCC
GGCCCAAGCACGGTAATGTA

Product: CO metabolism transcriptional regulator RcoM

Products: NA

Alternate protein names: Regulator of CO metabolism 1; RCOM-1

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKSSEPASVSAAERRAETFQHKLEQFNPGIVWLDQHGRVTAFNDVALQILGPAGEQSLGVAQDSLFGIDVVQLHPEKSRD
KLRFLLQSKDVGGCPVKSPPPVAMMINIPDRILMIKVSSMIAAGGACGTCMIFYDVTDLTTEPSGLPAGGSAPSPRRLFK
IPVYRKNRVILLDLKDIVRFQGDGHYTTIVTRDDRYLSNLSLADLELRLDSSIYLRVHRSHIVSLQYAVELVKLDESVNL
VMDDAEQTQVPVSRSRTAQLKELLGVV

Sequences:

>Translated_267_residues
MKSSEPASVSAAERRAETFQHKLEQFNPGIVWLDQHGRVTAFNDVALQILGPAGEQSLGVAQDSLFGIDVVQLHPEKSRD
KLRFLLQSKDVGGCPVKSPPPVAMMINIPDRILMIKVSSMIAAGGACGTCMIFYDVTDLTTEPSGLPAGGSAPSPRRLFK
IPVYRKNRVILLDLKDIVRFQGDGHYTTIVTRDDRYLSNLSLADLELRLDSSIYLRVHRSHIVSLQYAVELVKLDESVNL
VMDDAEQTQVPVSRSRTAQLKELLGVV
>Mature_267_residues
MKSSEPASVSAAERRAETFQHKLEQFNPGIVWLDQHGRVTAFNDVALQILGPAGEQSLGVAQDSLFGIDVVQLHPEKSRD
KLRFLLQSKDVGGCPVKSPPPVAMMINIPDRILMIKVSSMIAAGGACGTCMIFYDVTDLTTEPSGLPAGGSAPSPRRLFK
IPVYRKNRVILLDLKDIVRFQGDGHYTTIVTRDDRYLSNLSLADLELRLDSSIYLRVHRSHIVSLQYAVELVKLDESVNL
VMDDAEQTQVPVSRSRTAQLKELLGVV

Specific function: One-component, b-type heme-containing aerobic sensor and transcriptional regulator that responds to CO by activating the expression of the oxidation operon cox

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RCOM1_BURXL (Q13YL3)

Other databases:

- EMBL:   CP000270
- RefSeq:   YP_558878.1
- ProteinModelPortal:   Q13YL3
- GeneID:   4003299
- GenomeReviews:   CP000270_GR
- KEGG:   bxe:Bxe_A2142
- HOGENOM:   HBG334945
- OMA:   NIRHVRA
- ProtClustDB:   CLSK773769
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR007492
- InterPro:   IPR000014
- SMART:   SM00850
- SMART:   SM00091

Pfam domain/function: PF04397 LytTR

EC number: NA

Molecular weight: Translated: 29451; Mature: 29451

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50930 HTH_LYTTR; PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSEPASVSAAERRAETFQHKLEQFNPGIVWLDQHGRVTAFNDVALQILGPAGEQSLGV
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEEEEECCCCCCCCCC
AQDSLFGIDVVQLHPEKSRDKLRFLLQSKDVGGCPVKSPPPVAMMINIPDRILMIKVSSM
CCCCEECEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEHH
IAAGGACGTCMIFYDVTDLTTEPSGLPAGGSAPSPRRLFKIPVYRKNRVILLDLKDIVRF
HHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCEECCCEEEEEHHHHHEE
QGDGHYTTIVTRDDRYLSNLSLADLELRLDSSIYLRVHRSHIVSLQYAVELVKLDESVNL
CCCCEEEEEEECCCHHHHCCCEEEEEEEECCEEEEEEEHHHHEEHHHHEEEEEECCCCEE
VMDDAEQTQVPVSRSRTAQLKELLGVV
EECCCHHHCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKSSEPASVSAAERRAETFQHKLEQFNPGIVWLDQHGRVTAFNDVALQILGPAGEQSLGV
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEEEEECCCCCCCCCC
AQDSLFGIDVVQLHPEKSRDKLRFLLQSKDVGGCPVKSPPPVAMMINIPDRILMIKVSSM
CCCCEECEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEHH
IAAGGACGTCMIFYDVTDLTTEPSGLPAGGSAPSPRRLFKIPVYRKNRVILLDLKDIVRF
HHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCEECCCEEEEEHHHHHEE
QGDGHYTTIVTRDDRYLSNLSLADLELRLDSSIYLRVHRSHIVSLQYAVELVKLDESVNL
CCCCEEEEEEECCCHHHHCCCEEEEEEEECCEEEEEEEHHHHEEHHHHEEEEEECCCCEE
VMDDAEQTQVPVSRSRTAQLKELLGVV
EECCCHHHCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA