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The map label for this gene is virD4 [H]

Identifier: 91783158

GI number: 91783158

Start: 2003837

End: 2005567

Strand: Direct

Name: virD4 [H]

Synonym: Bxe_A2647

Alternate gene names: 91783158

Gene position: 2003837-2005567 (Clockwise)

Preceding gene: 91783157

Following gene: 91783159

Centisome position: 40.93

GC content: 62.16

Gene sequence:

>1731_bases
ATGACGATGCGCGCACACGTTGACACCACACCTGCGATCGTCGTTGGAGTATGGCGCGGGCGTTACCTGCGCTTTACCGG
CCAGCAGTTTGTGCTGATGGCTGCGCCCGCCCGTTCGGGTAAGGGCGTCGGCATTGTGATTCCGAATCTGCTCAGCTTTC
CCGATTCGGTGGTGGTGCTCGATATCAAGCAGGAAAACTACGCCGTTACGGCTGGCTTCCGGCGGGCACACGGGCAGGAC
GTCTATCTCTTCAACCCGTTTGCCGAAGACGGCCGCACGCATCGCTATAACCCGCTGTCGGCGATCTCGGATGGCCTGTT
TCGGGTCGGCGACATTCTCGCAATCGGCTATGCCTTGTATCCGTCGGGCGGCCACGACGATTTCTGGAAAGACCAGGCGA
GAAACCTGTTCCTCGGCATCGTGTTGCTGCTGTGCGAATGGCGTGATGCGCGCCGGGCGGCCAAGGGCGAGTCGATTCCC
AACTACCCGGTCACGATGGGTGAGGTGCTGCGGCAGTCGTCGGGCAATGGCATGCCGGTGAAGACCTGGCTTCAGCGCGC
ACTGGTCCAGCATCGCGACCTGCTGTCGGGATCGTGCGTCGACGCGATGAACCGTTTCCTGTCGAACGACGACAAGGTGC
TGGCCAGTGTACTGGCGACGTTCAACGCGCCGCTGACGATCTGGGCCAATCCGGTTGTCGATGCGGCGACGAGTGCGAAC
GATTTCGACCTGCGGGATGTGCGCCGCCGCCGCATGTCGGTCTATATCGGCATCACACCGGACCATCTGTCGGAAGCGGC
CCTGCTCGTCAATCTCGTGTTCTCGCAGCTCGTCAACCTGAACACGAAGCAATTGCCCGAAGCCGATCCGGCGCTGAAAT
TCCAGTGCCTGGTGTTGCTCGACGAGATGACCTCGATCGGCAAGATCCAGATCATCGCGCGCGCCGTCGCCTATATGGCC
GGCTACAACCTGCGCCTGCTGTCGATCGTCCAGTCGATCGCGCAGCTCGAATCGGTGTACGGGCGCGCCGATGCCCGCAC
CTTCATTACGAACCACGCGATGCAGATCCTCTATGCGCCGCGCGAGCAGAAGGATGCGAACGATTACTCGGAAATGCTCG
GCACGTTGACCGACCAGTCGCGCAGCGTCAGCCGTTCAAATGCGATTTTCGGTGGCCGGAGTGGATCGAGTGAGAGTGTG
TCCGAGCAGCGCCGCCCGTTGCTATTGCCGCAGGAACTGAAGGAGCTGGGGCGCGAGAAGGAAATCATCGTGCTCGAGAA
CACTCGTCCGATTCTGGCCGACAAGATCTGCTACTGGCGCGATCCCGAGTTTTCCTCTCGCGTGATGACCGCGCCCTCTG
TACCGGCCATGAACCTGGCCCATTTCAGCGCCGTGGTCGAACGCCGGCTGCGCTATCTGCGTTCCGACGAAATCGATCCG
GAAGGTGCCGGGCTGATCCATCTGCCGCCCGAGTATCTGGAAGTGCTGCAGGCGTGGGATCCCCGTGACCTGCCGCCGAA
CCTCGCCGATATCAGCGAGGACGAGGCTGTCGCCTACGTGGAGCGGCATTTCGTGCTGCTGGGCATTCCGGCCAGGAAGG
TCGAGCGCGTAGGGCGTCGTCTGGGCGCTGACGATCTTGACGTGGCGGAGCTCGATTTCGTTGAACCGGCGCAGCGCGCG
GCCCCGAATGGTTCGCAAGCCGGCTCACAGTCGATGGGAGCCCTGCAATGA

Upstream 100 bases:

>100_bases
CGTTCGGCCTGCATGCATTGTGGGAGCGCTCGGGCCGACGCCGTCTCTATGGCAGCGCTCGCTTTGCGAGCGAGCCGGAA
ATCCGCAAGGCGGGGCTGCT

Downstream 100 bases:

>100_bases
CTGCGCCCTATGTGGATGAAGCGAACCGTGCGCGTGCCGCGCTTGCCGTGATTCCAGCCGACGACTACGAGACCTGGGTC
GATATGGCGTTCGCGCTCAA

Product: putative Type IV secretory pathway protein VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 575

Protein sequence:

>576_residues
MTMRAHVDTTPAIVVGVWRGRYLRFTGQQFVLMAAPARSGKGVGIVIPNLLSFPDSVVVLDIKQENYAVTAGFRRAHGQD
VYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALYPSGGHDDFWKDQARNLFLGIVLLLCEWRDARRAAKGESIP
NYPVTMGEVLRQSSGNGMPVKTWLQRALVQHRDLLSGSCVDAMNRFLSNDDKVLASVLATFNAPLTIWANPVVDAATSAN
DFDLRDVRRRRMSVYIGITPDHLSEAALLVNLVFSQLVNLNTKQLPEADPALKFQCLVLLDEMTSIGKIQIIARAVAYMA
GYNLRLLSIVQSIAQLESVYGRADARTFITNHAMQILYAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRSGSSESV
SEQRRPLLLPQELKELGREKEIIVLENTRPILADKICYWRDPEFSSRVMTAPSVPAMNLAHFSAVVERRLRYLRSDEIDP
EGAGLIHLPPEYLEVLQAWDPRDLPPNLADISEDEAVAYVERHFVLLGIPARKVERVGRRLGADDLDVAELDFVEPAQRA
APNGSQAGSQSMGALQ

Sequences:

>Translated_576_residues
MTMRAHVDTTPAIVVGVWRGRYLRFTGQQFVLMAAPARSGKGVGIVIPNLLSFPDSVVVLDIKQENYAVTAGFRRAHGQD
VYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALYPSGGHDDFWKDQARNLFLGIVLLLCEWRDARRAAKGESIP
NYPVTMGEVLRQSSGNGMPVKTWLQRALVQHRDLLSGSCVDAMNRFLSNDDKVLASVLATFNAPLTIWANPVVDAATSAN
DFDLRDVRRRRMSVYIGITPDHLSEAALLVNLVFSQLVNLNTKQLPEADPALKFQCLVLLDEMTSIGKIQIIARAVAYMA
GYNLRLLSIVQSIAQLESVYGRADARTFITNHAMQILYAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRSGSSESV
SEQRRPLLLPQELKELGREKEIIVLENTRPILADKICYWRDPEFSSRVMTAPSVPAMNLAHFSAVVERRLRYLRSDEIDP
EGAGLIHLPPEYLEVLQAWDPRDLPPNLADISEDEAVAYVERHFVLLGIPARKVERVGRRLGADDLDVAELDFVEPAQRA
APNGSQAGSQSMGALQ
>Mature_575_residues
TMRAHVDTTPAIVVGVWRGRYLRFTGQQFVLMAAPARSGKGVGIVIPNLLSFPDSVVVLDIKQENYAVTAGFRRAHGQDV
YLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALYPSGGHDDFWKDQARNLFLGIVLLLCEWRDARRAAKGESIPN
YPVTMGEVLRQSSGNGMPVKTWLQRALVQHRDLLSGSCVDAMNRFLSNDDKVLASVLATFNAPLTIWANPVVDAATSAND
FDLRDVRRRRMSVYIGITPDHLSEAALLVNLVFSQLVNLNTKQLPEADPALKFQCLVLLDEMTSIGKIQIIARAVAYMAG
YNLRLLSIVQSIAQLESVYGRADARTFITNHAMQILYAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRSGSSESVS
EQRRPLLLPQELKELGREKEIIVLENTRPILADKICYWRDPEFSSRVMTAPSVPAMNLAHFSAVVERRLRYLRSDEIDPE
GAGLIHLPPEYLEVLQAWDPRDLPPNLADISEDEAVAYVERHFVLLGIPARKVERVGRRLGADDLDVAELDFVEPAQRAA
PNGSQAGSQSMGALQ

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 63944; Mature: 63813

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS01034 GLYCOSYL_HYDROL_F16

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMRAHVDTTPAIVVGVWRGRYLRFTGQQFVLMAAPARSGKGVGIVIPNLLSFPDSVVVL
CCEEECCCCCCEEEEEECCCCEEEECCCEEEEEECCCCCCCCCEEECCHHHCCCCCEEEE
DIKQENYAVTAGFRRAHGQDVYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALY
EEECCCEEEEECHHHCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEC
PSGGHDDFWKDQARNLFLGIVLLLCEWRDARRAAKGESIPNYPVTMGEVLRQSSGNGMPV
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCH
KTWLQRALVQHRDLLSGSCVDAMNRFLSNDDKVLASVLATFNAPLTIWANPVVDAATSAN
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCHHHHCCCCC
DFDLRDVRRRRMSVYIGITPDHLSEAALLVNLVFSQLVNLNTKQLPEADPALKFQCLVLL
CCCHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHH
DEMTSIGKIQIIARAVAYMAGYNLRLLSIVQSIAQLESVYGRADARTFITNHAMQILYAP
HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECC
REQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRSGSSESVSEQRRPLLLPQELKELGREK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHCCCCCCHHHHHHCCCCC
EIIVLENTRPILADKICYWRDPEFSSRVMTAPSVPAMNLAHFSAVVERRLRYLRSDEIDP
CEEEEECCCCHHHHCHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
EGAGLIHLPPEYLEVLQAWDPRDLPPNLADISEDEAVAYVERHFVLLGIPARKVERVGRR
CCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEECCHHHHHHHHHH
LGADDLDVAELDFVEPAQRAAPNGSQAGSQSMGALQ
CCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TMRAHVDTTPAIVVGVWRGRYLRFTGQQFVLMAAPARSGKGVGIVIPNLLSFPDSVVVL
CEEECCCCCCEEEEEECCCCEEEECCCEEEEEECCCCCCCCCEEECCHHHCCCCCEEEE
DIKQENYAVTAGFRRAHGQDVYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALY
EEECCCEEEEECHHHCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEC
PSGGHDDFWKDQARNLFLGIVLLLCEWRDARRAAKGESIPNYPVTMGEVLRQSSGNGMPV
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCH
KTWLQRALVQHRDLLSGSCVDAMNRFLSNDDKVLASVLATFNAPLTIWANPVVDAATSAN
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCHHHHCCCCC
DFDLRDVRRRRMSVYIGITPDHLSEAALLVNLVFSQLVNLNTKQLPEADPALKFQCLVLL
CCCHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHH
DEMTSIGKIQIIARAVAYMAGYNLRLLSIVQSIAQLESVYGRADARTFITNHAMQILYAP
HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECC
REQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRSGSSESVSEQRRPLLLPQELKELGREK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHCCCCCCHHHHHHCCCCC
EIIVLENTRPILADKICYWRDPEFSSRVMTAPSVPAMNLAHFSAVVERRLRYLRSDEIDP
CEEEEECCCCHHHHCHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
EGAGLIHLPPEYLEVLQAWDPRDLPPNLADISEDEAVAYVERHFVLLGIPARKVERVGRR
CCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEECCHHHHHHHHHH
LGADDLDVAELDFVEPAQRAAPNGSQAGSQSMGALQ
CCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]