| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91783151
Identifier: 91783151
GI number: 91783151
Start: 1997476
End: 1998645
Strand: Direct
Name: 91783151
Synonym: Bxe_A2654
Alternate gene names: NA
Gene position: 1997476-1998645 (Clockwise)
Preceding gene: 91783150
Following gene: 91783152
Centisome position: 40.8
GC content: 66.15
Gene sequence:
>1170_bases ATGAGCGGCCTCTTTACCGCCGTTGGCGGCACCCTCGAAAACGGCATGTCGACCTACGTCACGAACGTGTCGTCGGCCCT CTCTGGCGCGCTTGTGCCCGTCGTTACCACGGCCGTCACGGTCTGGGTACTCGCCTATGGTCTTGCGGTGGTGCGCGGCG AAGCTCACGAGGCGGTGCCGGCTTTTGCCTGGCGGGGGCTGAAAGTCGCGATCACGCTCGCATTCGCGCTCAGCACTGGT CTCTATCAGCAGCAGGTCGTTACCGCAGTCAACGGCGCCACGTCCGGGCTCGCACAGACGATCCAGAACGCGGCGAACAC GACAGGTGGCGGCAATCCGGGTTGCGGCTCCGTCAACGGTGGCAGCGTGACAGGGCAGGGCGCGGCGACCAGCATCTACC AGACGCTCGACTGCTATGACCAGCAGATTGATCTCGTGATGGATGCCTACTTCGACAAGGCGACGCATGAAGGATTCAGT CCGAGTGGTCTGGCCGCAGCCATTGGCGATTTCCTGTGCGGCCTGGTGGCAGCGCTCGGCGGCTCGATCTTCCTGATCGT TCTCGCGTTCGAAGTGGTGATGGCGCGCATGCTGCTCGATCTTGTGCTCGGCCTCGGTCCGATTTTCATCGCCTGCGCCG CATTCGCACCGACCGCACGCTTTTTCGAGGCGTGGACCGCGAAGGTTGCCAATTACGCGTTGCTGCAGGTACTCGTTGCC GCCTTCCTCGGCATGGCGCTCACGGCGTTCTCCGCTGATCTCACCGCACTTCATGCTACGGGCGGCACACCCGGCGCCGA TGCGTCGGCACTCGTGCAAACCATTTCCGCATCCCTGGACGACGCCGCAGCCGCTGCCGCGGCGATTGGCCTGTTCGCAA CCGGCGTGTTCCTCGCGATGGTGGGCTGGCAGTTGCCGTCCGTCGCAGCGGGCCTGTCCGGCGGCGCAACCCTGTCTGGC TTCGGTGCATTCGTGGCGGGCCTGGCCTCGCGGCACCTGGTGACCGCGATCGGCCGGGCGATCAGCGGCAGCGGGAAGGG GCCACGGCCGGGTGGCGAGATTCGGGACCGCACTGGTTCAGGTGGCGGATCAGGTGGTGGATCGGGCAGCGGTGCGATGC CGGCTTATCAGCGCGCCTCGCGCGCGAACCTGGGCCGGCAGGGCGAATGA
Upstream 100 bases:
>100_bases CGGAAGACTGGGTACCCGTGTTTCACGACCAGCTTGCGAAACGTCGCGCGGCACAGGCTGGGGCGCGCCACCCTCAACTG CCAGGGCCGGGAGGTGCGCG
Downstream 100 bases:
>100_bases GGACGAGGTGATGACCATGAATGGACGAAACAGATGGGTAGGTGCCGCATTGGTGTCGGCGGTATCAGTGGTATCGGCAG CATGGTGTGCCGGTGCTCAC
Product: putative type IV secretion system protein VirB6/TraH
Products: NA
Alternate protein names: Type IV Secretion System /TraH; Type IV Secretion System; VirB6 Type IV Secretion Protein; VirB6 Protein
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MSGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTAVTVWVLAYGLAVVRGEAHEAVPAFAWRGLKVAITLAFALSTG LYQQQVVTAVNGATSGLAQTIQNAANTTGGGNPGCGSVNGGSVTGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFS PSGLAAAIGDFLCGLVAALGGSIFLIVLAFEVVMARMLLDLVLGLGPIFIACAAFAPTARFFEAWTAKVANYALLQVLVA AFLGMALTAFSADLTALHATGGTPGADASALVQTISASLDDAAAAAAAIGLFATGVFLAMVGWQLPSVAAGLSGGATLSG FGAFVAGLASRHLVTAIGRAISGSGKGPRPGGEIRDRTGSGGGSGGGSGSGAMPAYQRASRANLGRQGE
Sequences:
>Translated_389_residues MSGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTAVTVWVLAYGLAVVRGEAHEAVPAFAWRGLKVAITLAFALSTG LYQQQVVTAVNGATSGLAQTIQNAANTTGGGNPGCGSVNGGSVTGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFS PSGLAAAIGDFLCGLVAALGGSIFLIVLAFEVVMARMLLDLVLGLGPIFIACAAFAPTARFFEAWTAKVANYALLQVLVA AFLGMALTAFSADLTALHATGGTPGADASALVQTISASLDDAAAAAAAIGLFATGVFLAMVGWQLPSVAAGLSGGATLSG FGAFVAGLASRHLVTAIGRAISGSGKGPRPGGEIRDRTGSGGGSGGGSGSGAMPAYQRASRANLGRQGE >Mature_388_residues SGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTAVTVWVLAYGLAVVRGEAHEAVPAFAWRGLKVAITLAFALSTGL YQQQVVTAVNGATSGLAQTIQNAANTTGGGNPGCGSVNGGSVTGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFSP SGLAAAIGDFLCGLVAALGGSIFLIVLAFEVVMARMLLDLVLGLGPIFIACAAFAPTARFFEAWTAKVANYALLQVLVAA FLGMALTAFSADLTALHATGGTPGADASALVQTISASLDDAAAAAAAIGLFATGVFLAMVGWQLPSVAAGLSGGATLSGF GAFVAGLASRHLVTAIGRAISGSGKGPRPGGEIRDRTGSGGGSGGGSGSGAMPAYQRASRANLGRQGE
Specific function: Unknown
COG id: COG3704
COG function: function code U; Type IV secretory pathway, VirB6 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38568; Mature: 38437
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTAVTVWVLAYGLAVVRGEAHEAVP CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AFAWRGLKVAITLAFALSTGLYQQQVVTAVNGATSGLAQTIQNAANTTGGGNPGCGSVNG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCC GSVTGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFSPSGLAAAIGDFLCGLVAALG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH GSIFLIVLAFEVVMARMLLDLVLGLGPIFIACAAFAPTARFFEAWTAKVANYALLQVLVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFLGMALTAFSADLTALHATGGTPGADASALVQTISASLDDAAAAAAAIGLFATGVFLAM HHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGWQLPSVAAGLSGGATLSGFGAFVAGLASRHLVTAIGRAISGSGKGPRPGGEIRDRTGS HHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GGGSGGGSGSGAMPAYQRASRANLGRQGE CCCCCCCCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure SGLFTAVGGTLENGMSTYVTNVSSALSGALVPVVTTAVTVWVLAYGLAVVRGEAHEAVP CCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AFAWRGLKVAITLAFALSTGLYQQQVVTAVNGATSGLAQTIQNAANTTGGGNPGCGSVNG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCC GSVTGQGAATSIYQTLDCYDQQIDLVMDAYFDKATHEGFSPSGLAAAIGDFLCGLVAALG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH GSIFLIVLAFEVVMARMLLDLVLGLGPIFIACAAFAPTARFFEAWTAKVANYALLQVLVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFLGMALTAFSADLTALHATGGTPGADASALVQTISASLDDAAAAAAAIGLFATGVFLAM HHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGWQLPSVAAGLSGGATLSGFGAFVAGLASRHLVTAIGRAISGSGKGPRPGGEIRDRTGS HHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GGGSGGGSGSGAMPAYQRASRANLGRQGE CCCCCCCCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA