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The map label for this gene is virB5 [H]

Identifier: 91783152

GI number: 91783152

Start: 1998662

End: 1999375

Strand: Direct

Name: virB5 [H]

Synonym: Bxe_A2653

Alternate gene names: 91783152

Gene position: 1998662-1999375 (Clockwise)

Preceding gene: 91783151

Following gene: 91783153

Centisome position: 40.82

GC content: 61.9

Gene sequence:

>714_bases
ATGAATGGACGAAACAGATGGGTAGGTGCCGCATTGGTGTCGGCGGTATCAGTGGTATCGGCAGCATGGTGTGCCGGTGC
TCACGCGCAAGGTATCCCGGTCTTTGACGCTCAGAACGTTGTGCAGGCCATTGCTACGGTGGCCCAACTGGAGCAGGAAG
TGCAGCAGGAAATCCAGATCTATCAGTCGACGGTTGGCACGCGCGGCTTCGGTGCGCTCCTGAGCAACCCGGTCGTCGCA
AACTCCCTGCCGTCGAACTGGCAGAGCGTCTATACGGCGATCCAGAACGGCGGCTATTCGGGCCTGACGGGCAGTGCCCA
GGCTCTGCGCTCGGCCAGCCAGATCTATAACTGCGAGGACCAGACCGGGATCGATCAGCAGGTGTGCCAGCGTGCGCTCA
ACAAGCCTTACCAGGACAAGGCGTTTGGCCAGCAGGCCTACCAGACCGAGTTGCAGGAGCTGAACCAGATCCAGAGTCTG
GCGCAACAGATCGATGTGACCCAAGACCCGAAGGGCGTCGCCGAGCTGCAGGCGCGCATCCAGGCGGAGAGCACGACGGT
CGGCAACGAGATGACTAAGCTGCAGCTCTTCCGGATGCTGGCCGACGCCGAGGACAAGCTCGTGGCAGAGCAGCAGAGCG
AGCTGGTGCTGAGCCGGGCGGGCAAGACCAATAGGCTGCAGGACCAGATGGTCCCGGCGTCGTTCAGAAACTGA

Upstream 100 bases:

>100_bases
GGATCAGGTGGTGGATCGGGCAGCGGTGCGATGCCGGCTTATCAGCGCGCCTCGCGCGCGAACCTGGGCCGGCAGGGCGA
ATGAGGACGAGGTGATGACC

Downstream 100 bases:

>100_bases
GGAGGAATCATGTACAAATTATTGGTCGCCATATTTTCAATAAATTTCGTCATCCTTATAAATGGATGTGCTTCTGGTCC
GCCAAAGCCTGTCCTGCCGG

Product: putative type IV secretion system protein VirB5/TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNGRNRWVGAALVSAVSVVSAAWCAGAHAQGIPVFDAQNVVQAIATVAQLEQEVQQEIQIYQSTVGTRGFGALLSNPVVA
NSLPSNWQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQQVCQRALNKPYQDKAFGQQAYQTELQELNQIQSL
AQQIDVTQDPKGVAELQARIQAESTTVGNEMTKLQLFRMLADAEDKLVAEQQSELVLSRAGKTNRLQDQMVPASFRN

Sequences:

>Translated_237_residues
MNGRNRWVGAALVSAVSVVSAAWCAGAHAQGIPVFDAQNVVQAIATVAQLEQEVQQEIQIYQSTVGTRGFGALLSNPVVA
NSLPSNWQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQQVCQRALNKPYQDKAFGQQAYQTELQELNQIQSL
AQQIDVTQDPKGVAELQARIQAESTTVGNEMTKLQLFRMLADAEDKLVAEQQSELVLSRAGKTNRLQDQMVPASFRN
>Mature_237_residues
MNGRNRWVGAALVSAVSVVSAAWCAGAHAQGIPVFDAQNVVQAIATVAQLEQEVQQEIQIYQSTVGTRGFGALLSNPVVA
NSLPSNWQSVYTAIQNGGYSGLTGSAQALRSASQIYNCEDQTGIDQQVCQRALNKPYQDKAFGQQAYQTELQELNQIQSL
AQQIDVTQDPKGVAELQARIQAESTTVGNEMTKLQLFRMLADAEDKLVAEQQSELVLSRAGKTNRLQDQMVPASFRN

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012991
- InterPro:   IPR014158
- InterPro:   IPR023220 [H]

Pfam domain/function: PF07996 T4SS [H]

EC number: NA

Molecular weight: Translated: 25704; Mature: 25704

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGRNRWVGAALVSAVSVVSAAWCAGAHAQGIPVFDAQNVVQAIATVAQLEQEVQQEIQI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YQSTVGTRGFGALLSNPVVANSLPSNWQSVYTAIQNGGYSGLTGSAQALRSASQIYNCED
HHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
QTGIDQQVCQRALNKPYQDKAFGQQAYQTELQELNQIQSLAQQIDVTQDPKGVAELQARI
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
QAESTTVGNEMTKLQLFRMLADAEDKLVAEQQSELVLSRAGKTNRLQDQMVPASFRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MNGRNRWVGAALVSAVSVVSAAWCAGAHAQGIPVFDAQNVVQAIATVAQLEQEVQQEIQI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YQSTVGTRGFGALLSNPVVANSLPSNWQSVYTAIQNGGYSGLTGSAQALRSASQIYNCED
HHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
QTGIDQQVCQRALNKPYQDKAFGQQAYQTELQELNQIQSLAQQIDVTQDPKGVAELQARI
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
QAESTTVGNEMTKLQLFRMLADAEDKLVAEQQSELVLSRAGKTNRLQDQMVPASFRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]