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The map label for this gene is ltrA [H]

Identifier: 91783121

GI number: 91783121

Start: 1970516

End: 1971415

Strand: Direct

Name: ltrA [H]

Synonym: Bxe_A2686

Alternate gene names: 91783121

Gene position: 1970516-1971415 (Clockwise)

Preceding gene: 91783116

Following gene: 91783122

Centisome position: 40.25

GC content: 67.0

Gene sequence:

>900_bases
ATGATCAGACTGGAAGACCTGCGGATTTTCCTTTTCGCCGCGGACAACGGCAGCCTGTCGGCAGCGGCACGCCAGTTGGA
CCTGACGCCAGCGGTTGCGAGCGTTGGCCTCAAGCGGCTGGAGGCGGAACTCGGCACGCGGCTGCTCGCGCGCTCGACGC
GCAGCCTGCGGCTTACGCCGGACGGCGAACGCTATTTGCAGTACGCGCGCAACGTGATGGAGCAGGTGGATGCAGGTCGC
AACGCGGTAGCACACGGCCGCAGGATGATCGGCGGCGCGGTTTCACTGTCGGTGCCGTCCGATCTGGGGCGTCACGCGCT
GCTCGAATGGCTCGACGAGTTTCAGGTGCAATATCCGGACGTATCGCTGCAGGTCCGCATCGGCGATCACGTGACCGACA
TGTTCCGTGCACCCATCGGCCTTGCGATCCGCTACGGCGTGCCCGAAGACTCGACGCTGGTCGCGTTGCCGCTCGCGCCG
GACAACCGGCGTGTGCTGTGCGCGTCGCCCGCATATTTCGCGCGCCACGGTCGCCCGGAGACGCCGGCCGACCTGCGCAG
GCACAACTGCCTGCGCTTTGCGCTGAGCGACACGCTGCATGATCGCTGGACTTTCTTCAGCGGCGGCAAGCCCGACGTGG
TGAGTGTGCGCGGCAACCGCAGCAGCGACGACGGAGAACTGGTCCGGCGCTGGGCCGTGGCGGGGTTCGGGATCGCGTAC
AAGTCAAGGCTGGACGTGCTGAACGACCTGCGCGCCGGCCGCCTCGAAGCGGCGCTGACGGGATTCGACGGAGAAGGCGC
GCCGCTGCACCTCGTCTGCGCACATCGGACGATGCTGTCGCCGACGGTCAACGCGCTGCGCGATTTCCTGTTGCAGAGGA
TCGGTGCCTATCTGGCGTAG

Upstream 100 bases:

>100_bases
GGTTGCCGGCTCAGGGCGGAAACAGGCGCAAGCAGCGCAATCAGCTTCGTGATAATTTTGAAAATCGCTCATGCACCTGT
CTGCGGGGAGGCACATTTCA

Downstream 100 bases:

>100_bases
GCCGGTTTCAATAGAATTTTGAAACTGATATTGCACTTCGCGCCTGTTACCCGGCGCGATACAGGCTGATCATACGCACC
AGTTGGGCAAGTTCCGGGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MIRLEDLRIFLFAADNGSLSAAARQLDLTPAVASVGLKRLEAELGTRLLARSTRSLRLTPDGERYLQYARNVMEQVDAGR
NAVAHGRRMIGGAVSLSVPSDLGRHALLEWLDEFQVQYPDVSLQVRIGDHVTDMFRAPIGLAIRYGVPEDSTLVALPLAP
DNRRVLCASPAYFARHGRPETPADLRRHNCLRFALSDTLHDRWTFFSGGKPDVVSVRGNRSSDDGELVRRWAVAGFGIAY
KSRLDVLNDLRAGRLEAALTGFDGEGAPLHLVCAHRTMLSPTVNALRDFLLQRIGAYLA

Sequences:

>Translated_299_residues
MIRLEDLRIFLFAADNGSLSAAARQLDLTPAVASVGLKRLEAELGTRLLARSTRSLRLTPDGERYLQYARNVMEQVDAGR
NAVAHGRRMIGGAVSLSVPSDLGRHALLEWLDEFQVQYPDVSLQVRIGDHVTDMFRAPIGLAIRYGVPEDSTLVALPLAP
DNRRVLCASPAYFARHGRPETPADLRRHNCLRFALSDTLHDRWTFFSGGKPDVVSVRGNRSSDDGELVRRWAVAGFGIAY
KSRLDVLNDLRAGRLEAALTGFDGEGAPLHLVCAHRTMLSPTVNALRDFLLQRIGAYLA
>Mature_299_residues
MIRLEDLRIFLFAADNGSLSAAARQLDLTPAVASVGLKRLEAELGTRLLARSTRSLRLTPDGERYLQYARNVMEQVDAGR
NAVAHGRRMIGGAVSLSVPSDLGRHALLEWLDEFQVQYPDVSLQVRIGDHVTDMFRAPIGLAIRYGVPEDSTLVALPLAP
DNRRVLCASPAYFARHGRPETPADLRRHNCLRFALSDTLHDRWTFFSGGKPDVVSVRGNRSSDDGELVRRWAVAGFGIAY
KSRLDVLNDLRAGRLEAALTGFDGEGAPLHLVCAHRTMLSPTVNALRDFLLQRIGAYLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=251, Percent_Identity=31.8725099601594, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=258, Percent_Identity=31.0077519379845, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=29.9319727891156, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI145693193, Length=310, Percent_Identity=30.9677419354839, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789639, Length=306, Percent_Identity=28.7581699346405, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=25.6055363321799, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787589, Length=274, Percent_Identity=25.1824817518248, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789173, Length=294, Percent_Identity=26.530612244898, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786448, Length=299, Percent_Identity=25.4180602006689, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=26.5822784810127, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=208, Percent_Identity=27.8846153846154, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790011, Length=268, Percent_Identity=24.2537313432836, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32979; Mature: 32979

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLEDLRIFLFAADNGSLSAAARQLDLTPAVASVGLKRLEAELGTRLLARSTRSLRLTP
CEEEEEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
DGERYLQYARNVMEQVDAGRNAVAHGRRMIGGAVSLSVPSDLGRHALLEWLDEFQVQYPD
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHCEECCC
VSLQVRIGDHVTDMFRAPIGLAIRYGVPEDSTLVALPLAPDNRRVLCASPAYFARHGRPE
EEEEEEECCHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCHHHHHCCCCC
TPADLRRHNCLRFALSDTLHDRWTFFSGGKPDVVSVRGNRSSDDGELVRRWAVAGFGIAY
CCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHH
KSRLDVLNDLRAGRLEAALTGFDGEGAPLHLVCAHRTMLSPTVNALRDFLLQRIGAYLA
HHHHHHHHHHCCCCCHHEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRLEDLRIFLFAADNGSLSAAARQLDLTPAVASVGLKRLEAELGTRLLARSTRSLRLTP
CEEEEEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
DGERYLQYARNVMEQVDAGRNAVAHGRRMIGGAVSLSVPSDLGRHALLEWLDEFQVQYPD
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHCEECCC
VSLQVRIGDHVTDMFRAPIGLAIRYGVPEDSTLVALPLAPDNRRVLCASPAYFARHGRPE
EEEEEEECCHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCHHHHHCCCCC
TPADLRRHNCLRFALSDTLHDRWTFFSGGKPDVVSVRGNRSSDDGELVRRWAVAGFGIAY
CCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHH
KSRLDVLNDLRAGRLEAALTGFDGEGAPLHLVCAHRTMLSPTVNALRDFLLQRIGAYLA
HHHHHHHHHHCCCCCHHEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]