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The map label for this gene is ybhD [H]

Identifier: 91783077

GI number: 91783077

Start: 1922054

End: 1922923

Strand: Direct

Name: ybhD [H]

Synonym: Bxe_A2733

Alternate gene names: 91783077

Gene position: 1922054-1922923 (Clockwise)

Preceding gene: 91783074

Following gene: 91783078

Centisome position: 39.26

GC content: 60.0

Gene sequence:

>870_bases
TTGCGGGCAAGCTCAAGTATCCGGGTGGGCGCCGAGCGCGCGCATCTCGCAATAGGTGCGGCGAGCAAACGGATGGCCGA
CCTCGAAGCATCAATTGGCGTGCAACTGTTCGAGCGCCACGCCCGTGGCGTTGCGCTGACCGCAGCAGGCGAAGCGCTCG
AACGACATACGCAGCGGATCTTGAACGACATGGACCGGATGACCGCTGAGATGTCGGATTATGCGGCGGGTGTTGTGGGC
GTCGTCCGGTTGTGGGCCAACACATCGAGTGTGACCCAGTTCCTTCCGACGGACATCGCGGCGTTTAGCGTAGTCCATCC
TGATATCCGTATCGAGTTGGAAGAGCAGGATAGCGAGCAGGTTGCTCTGGCCGTGGTAGATGGTGCAGCCGATTTTGGCA
TTATGGCAGACCGGATGCCAACGCTTGGGCTTCAGGCGATGTTGTATCGCAAGGATCATCTGTTCCTTGTTGTGCCCGAT
GGTCATCCACTGACTCAGCGCGAATCGGTTTCGTTCGTCGACGCACTCGAGTTCGACTTCGTCAGCCTTGCTCGTAATAC
GTCGCTGGCGAAGCGTCTTCAGGCCGCCACCGCCTTCTCTGGTGGCCAGATCAAGTTGCGAATCCAGGTCCGCAGCTTCG
ATGCGATGTGCCTCATGGTAGCCGCAGGGCCTGGCATCGCCATACTGCCCGATGCAGCGGTGGGTCCCCACCTGAGGTCG
ATGGACCTCTGCAGGATACCCCTGTCGGAAAACTGGACGCGTCGTGAACTTTTCATCTGTGCTCGTGACCTGAACGCGTT
GCCCCGGCCCGCGTCGCTGCTCGTCAATCATTTGATTGGAGCCACGCCGGACGCTGTGGCAGTCCGTTGA

Upstream 100 bases:

>100_bases
CGGCTTCCAGCATGAATTCCCGCGTATATCGGGCTCTCGGATTACCCATCTTTCCTTCCTCCTTGCGTGAGTTTTACACA
CTCAGCAAGGGATCCATTTT

Downstream 100 bases:

>100_bases
TCGGTATCGAGGTTTTGTGTTTCACGAAAGCCCCGTTCCGCATTAGTGCATTTCGCCTACAGCATCGCGCGTGGACAATA
GATGTCCCTATATCGCAGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRASSSIRVGAERAHLAIGAASKRMADLEASIGVQLFERHARGVALTAAGEALERHTQRILNDMDRMTAEMSDYAAGVVG
VVRLWANTSSVTQFLPTDIAAFSVVHPDIRIELEEQDSEQVALAVVDGAADFGIMADRMPTLGLQAMLYRKDHLFLVVPD
GHPLTQRESVSFVDALEFDFVSLARNTSLAKRLQAATAFSGGQIKLRIQVRSFDAMCLMVAAGPGIAILPDAAVGPHLRS
MDLCRIPLSENWTRRELFICARDLNALPRPASLLVNHLIGATPDAVAVR

Sequences:

>Translated_289_residues
MRASSSIRVGAERAHLAIGAASKRMADLEASIGVQLFERHARGVALTAAGEALERHTQRILNDMDRMTAEMSDYAAGVVG
VVRLWANTSSVTQFLPTDIAAFSVVHPDIRIELEEQDSEQVALAVVDGAADFGIMADRMPTLGLQAMLYRKDHLFLVVPD
GHPLTQRESVSFVDALEFDFVSLARNTSLAKRLQAATAFSGGQIKLRIQVRSFDAMCLMVAAGPGIAILPDAAVGPHLRS
MDLCRIPLSENWTRRELFICARDLNALPRPASLLVNHLIGATPDAVAVR
>Mature_289_residues
MRASSSIRVGAERAHLAIGAASKRMADLEASIGVQLFERHARGVALTAAGEALERHTQRILNDMDRMTAEMSDYAAGVVG
VVRLWANTSSVTQFLPTDIAAFSVVHPDIRIELEEQDSEQVALAVVDGAADFGIMADRMPTLGLQAMLYRKDHLFLVVPD
GHPLTQRESVSFVDALEFDFVSLARNTSLAKRLQAATAFSGGQIKLRIQVRSFDAMCLMVAAGPGIAILPDAAVGPHLRS
MDLCRIPLSENWTRRELFICARDLNALPRPASLLVNHLIGATPDAVAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=278, Percent_Identity=26.6187050359712, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788296, Length=212, Percent_Identity=25.4716981132075, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=232, Percent_Identity=29.7413793103448, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=24.6636771300448, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787530, Length=292, Percent_Identity=23.6301369863014, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789204, Length=233, Percent_Identity=27.0386266094421, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790399, Length=256, Percent_Identity=22.65625, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=276, Percent_Identity=22.463768115942, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=231, Percent_Identity=26.4069264069264, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787806, Length=262, Percent_Identity=22.9007633587786, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87081904, Length=276, Percent_Identity=25, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31321; Mature: 31321

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASSSIRVGAERAHLAIGAASKRMADLEASIGVQLFERHARGVALTAAGEALERHTQRI
CCCCCCEEECCCHHEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHH
LNDMDRMTAEMSDYAAGVVGVVRLWANTSSVTQFLPTDIAAFSVVHPDIRIELEEQDSEQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHEEECCCEEEEECCCCCCE
VALAVVDGAADFGIMADRMPTLGLQAMLYRKDHLFLVVPDGHPLTQRESVSFVDALEFDF
EEEEEEECCCCCCCHHCCCCCCCHHHHEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHH
VSLARNTSLAKRLQAATAFSGGQIKLRIQVRSFDAMCLMVAAGPGIAILPDAAVGPHLRS
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCC
MDLCRIPLSENWTRRELFICARDLNALPRPASLLVNHLIGATPDAVAVR
CCEEECCCCCCCCHHHEEEEEHHCCCCCCCHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MRASSSIRVGAERAHLAIGAASKRMADLEASIGVQLFERHARGVALTAAGEALERHTQRI
CCCCCCEEECCCHHEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHH
LNDMDRMTAEMSDYAAGVVGVVRLWANTSSVTQFLPTDIAAFSVVHPDIRIELEEQDSEQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHEEECCCEEEEECCCCCCE
VALAVVDGAADFGIMADRMPTLGLQAMLYRKDHLFLVVPDGHPLTQRESVSFVDALEFDF
EEEEEEECCCCCCCHHCCCCCCCHHHHEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHH
VSLARNTSLAKRLQAATAFSGGQIKLRIQVRSFDAMCLMVAAGPGIAILPDAAVGPHLRS
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCC
MDLCRIPLSENWTRRELFICARDLNALPRPASLLVNHLIGATPDAVAVR
CCEEECCCCCCCCHHHEEEEEHHCCCCCCCHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]