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The map label for this gene is ycdC [C]

Identifier: 91783063

GI number: 91783063

Start: 1907858

End: 1908559

Strand: Direct

Name: ycdC [C]

Synonym: Bxe_A2747

Alternate gene names: 91783063

Gene position: 1907858-1908559 (Clockwise)

Preceding gene: 91783061

Following gene: 91783064

Centisome position: 38.97

GC content: 62.25

Gene sequence:

>702_bases
ATGAGCACCTGGAAGAATGCGGTGTTGGGCGCGAGCGAGCAATTCGATCGCAAGCGCGAGGTGCTGTTGCGCGAGGCGGC
GGCGTCGTTCAACCGGAGCGGCTATCACGGCACGTCGCTCGCTGAAATCGCGAAGAAACTCGGCGTGACGAAAGCCGCGT
TGTATACGTATGTACCGAGCAAGGAAGAGCTGCTTTATTTCTGCCACGATTCGGCAATGGACAGCGCGATGGAGATTCTC
GTGCAGGCGCGCGCGGGAACCGGAACCGGCCTGCAGAAACTCGCGGCCACGCTGCGCGGCTATCTGAACCTGATGCTCGG
CGAGGACGGCAGCTACGTGGTTCTGCTCGAAGAGAACGCAATGAAGCCCGTGCACATGCGCGCGATCATCAAGCGGCGGG
ACAGGTTCGAACAGGGGTTGCGCGATCTGGTCGAGGAAGGCATTGCGGACGGCAGCATCGTGTCATGCAATGCGAAGCTC
GCCATTTTCATGATCATGGGCGCAATGAACTGGAGCCGGAAGTGGTATCAGCCGAGCGGCAGCTGGTCGGGCGCTCAGAT
TGCGGTGGCGCTTACCGAGATTCTCGAACGTTCGTTAGCGGGCACACCCGTCGCGCAGCTGATCGCGGATCCGGGCAGCA
TTGAGGTAGAGGAGCCGGCCGAGGAGGCGCCGGTCGCCAAGGCAAGGCGGCGGCCGGCGTAA

Upstream 100 bases:

>100_bases
TCCGATCAAATTTTTTCAAATCATTTTTTGAATCACTCACTGAAATGAAACAGAAAGACGGCTTGCTTCGGTTTGCGCAT
GGCTTTTGCGGAGTGCGTGT

Downstream 100 bases:

>100_bases
AGCCGGCCGGCATGGAACGCCGCCCGCTGGTTCAGATTCGACGCGTTCTGGACACGGGCTTGCCCCAAGTCCGGGATGCG
CAAATGCGGGGATCGTCGAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Transcriptional Regulatory Protein; Transcription Regulator; TetR Family Transcriptional Repressor; TetR Family Regulatory

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSTWKNAVLGASEQFDRKREVLLREAAASFNRSGYHGTSLAEIAKKLGVTKAALYTYVPSKEELLYFCHDSAMDSAMEIL
VQARAGTGTGLQKLAATLRGYLNLMLGEDGSYVVLLEENAMKPVHMRAIIKRRDRFEQGLRDLVEEGIADGSIVSCNAKL
AIFMIMGAMNWSRKWYQPSGSWSGAQIAVALTEILERSLAGTPVAQLIADPGSIEVEEPAEEAPVAKARRRPA

Sequences:

>Translated_233_residues
MSTWKNAVLGASEQFDRKREVLLREAAASFNRSGYHGTSLAEIAKKLGVTKAALYTYVPSKEELLYFCHDSAMDSAMEIL
VQARAGTGTGLQKLAATLRGYLNLMLGEDGSYVVLLEENAMKPVHMRAIIKRRDRFEQGLRDLVEEGIADGSIVSCNAKL
AIFMIMGAMNWSRKWYQPSGSWSGAQIAVALTEILERSLAGTPVAQLIADPGSIEVEEPAEEAPVAKARRRPA
>Mature_232_residues
STWKNAVLGASEQFDRKREVLLREAAASFNRSGYHGTSLAEIAKKLGVTKAALYTYVPSKEELLYFCHDSAMDSAMEILV
QARAGTGTGLQKLAATLRGYLNLMLGEDGSYVVLLEENAMKPVHMRAIIKRRDRFEQGLRDLVEEGIADGSIVSCNAKLA
IFMIMGAMNWSRKWYQPSGSWSGAQIAVALTEILERSLAGTPVAQLIADPGSIEVEEPAEEAPVAKARRRPA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25492; Mature: 25360

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTWKNAVLGASEQFDRKREVLLREAAASFNRSGYHGTSLAEIAKKLGVTKAALYTYVPS
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCC
KEELLYFCHDSAMDSAMEILVQARAGTGTGLQKLAATLRGYLNLMLGEDGSYVVLLEENA
HHHEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
MKPVHMRAIIKRRDRFEQGLRDLVEEGIADGSIVSCNAKLAIFMIMGAMNWSRKWYQPSG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCHHHCCCCC
SWSGAQIAVALTEILERSLAGTPVAQLIADPGSIEVEEPAEEAPVAKARRRPA
CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEECCCHHCCCHHHHHCCCC
>Mature Secondary Structure 
STWKNAVLGASEQFDRKREVLLREAAASFNRSGYHGTSLAEIAKKLGVTKAALYTYVPS
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCC
KEELLYFCHDSAMDSAMEILVQARAGTGTGLQKLAATLRGYLNLMLGEDGSYVVLLEENA
HHHEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
MKPVHMRAIIKRRDRFEQGLRDLVEEGIADGSIVSCNAKLAIFMIMGAMNWSRKWYQPSG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCHHHCCCCC
SWSGAQIAVALTEILERSLAGTPVAQLIADPGSIEVEEPAEEAPVAKARRRPA
CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEECCCHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA