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The map label for this gene is yafC [H]

Identifier: 91782924

GI number: 91782924

Start: 1729262

End: 1730167

Strand: Direct

Name: yafC [H]

Synonym: Bxe_A2896

Alternate gene names: 91782924

Gene position: 1729262-1730167 (Clockwise)

Preceding gene: 91782923

Following gene: 91782925

Centisome position: 35.32

GC content: 61.59

Gene sequence:

>906_bases
ATGAGCGAGCGGGTAGATGCACCCATAAATGAAATCGCGGTATTTGTGGCGGTTGCCCAAACCGGCAGCTTTACGCGCGC
GGCCGAAGAAATCGGCAGCAGCAAGTCCAATGTGGGTAAAGCGGTCCAGCGCCTCGAAGCCCGACTCGGCTCCCAGCTTT
TTCAGCGCACCACTCGTGCGGTGCGGCTGACCGAAGACGGCGAGACGTATCTGCTTGCCGCGCAGGAAGCGCTCGAATCC
CTTCGCGAAGCGGAGCAGCAACTCGCGTCGAGGCGGGCCGAGCCCGCCGGGCGCGTCAAGATTGACCTGCCCGCGGGCTT
CGGACGTCTGTTGCTGCCGAGTTTTATCCAGCTTCGTGAAAAGTATCCCAAGCTCACGGTGGAGATGGCCCTGACTGACC
GGATGTCCGACCCGGTCGGGGAGGGCTGGGATATTGTCGTTCGCATTGGTGCGCTACCTGACGACAGTGAATTTACCGTG
CGCAAGCTGTGCGACCTGAGGCTAGGTCTGTATGCGTCGCCAGAGTATCTCGCGCGCCGGGGTGACGTGAAGACGCTCGC
GGAGTTGACTGACCACGACGCAATAGTTTTCCGTGGTCCAACGGGGCGACTACGTTCATGGACAACGCGAGAAAACGACA
CCGTGCGGGAAATTGTCCCGCACCCTGTTCTCGTGCTTGCCGACGGTCAGGCTCTCGTCGAGGCGGCGGTGGCTGGCTTC
GGCATTACTCAGATTTACGACCGTGTCGCGCTTCCACATGTGCGTGCCGGTCGCCTCGTGCACCTGCTACCCGAAGCGGA
TGTAGACGGGCCGCCCGTGCATGCCATCATTTCGCTCGGGCAGAAGATGACGGCCAAGACACGGGCGGCGGTGAATCACC
TCGCCGAAACGCTACAGCAGGGATAA

Upstream 100 bases:

>100_bases
GGTAGCCTCCTTTCGCGTCAGTCGGGTCAATCGGGCTCCTACAGGGCCGCAGGCGCCTGATACAGTCTGATTTTCCCACC
TTGCGTAATGGGGTTAAGCG

Downstream 100 bases:

>100_bases
CAAAAGCGGCGTACGCGTGGCTGCCTGGCCGTAAAGCCGGGCAGACCTCGATTCAGCGGCATGGAGAGACAATGGTCCCG
CATTGCTTTGGACTGTTAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSERVDAPINEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRAVRLTEDGETYLLAAQEALES
LREAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFIQLREKYPKLTVEMALTDRMSDPVGEGWDIVVRIGALPDDSEFTV
RKLCDLRLGLYASPEYLARRGDVKTLAELTDHDAIVFRGPTGRLRSWTTRENDTVREIVPHPVLVLADGQALVEAAVAGF
GITQIYDRVALPHVRAGRLVHLLPEADVDGPPVHAIISLGQKMTAKTRAAVNHLAETLQQG

Sequences:

>Translated_301_residues
MSERVDAPINEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRAVRLTEDGETYLLAAQEALES
LREAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFIQLREKYPKLTVEMALTDRMSDPVGEGWDIVVRIGALPDDSEFTV
RKLCDLRLGLYASPEYLARRGDVKTLAELTDHDAIVFRGPTGRLRSWTTRENDTVREIVPHPVLVLADGQALVEAAVAGF
GITQIYDRVALPHVRAGRLVHLLPEADVDGPPVHAIISLGQKMTAKTRAAVNHLAETLQQG
>Mature_300_residues
SERVDAPINEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRAVRLTEDGETYLLAAQEALESL
REAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFIQLREKYPKLTVEMALTDRMSDPVGEGWDIVVRIGALPDDSEFTVR
KLCDLRLGLYASPEYLARRGDVKTLAELTDHDAIVFRGPTGRLRSWTTRENDTVREIVPHPVLVLADGQALVEAAVAGFG
ITQIYDRVALPHVRAGRLVHLLPEADVDGPPVHAIISLGQKMTAKTRAAVNHLAETLQQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=31, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI145693193, Length=259, Percent_Identity=33.976833976834, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=28.9198606271777, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=27.3356401384083, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.7671232876712, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787589, Length=269, Percent_Identity=28.6245353159851, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081978, Length=265, Percent_Identity=31.6981132075472, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789173, Length=269, Percent_Identity=30.1115241635688, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787601, Length=171, Percent_Identity=30.4093567251462, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788481, Length=266, Percent_Identity=27.4436090225564, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=30.8333333333333, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32929; Mature: 32798

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERVDAPINEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRA
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VRLTEDGETYLLAAQEALESLREAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFIQLRE
EEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH
KYPKLTVEMALTDRMSDPVGEGWDIVVRIGALPDDSEFTVRKLCDLRLGLYASPEYLARR
HCCCEEEEHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHC
GDVKTLAELTDHDAIVFRGPTGRLRSWTTRENDTVREIVPHPVLVLADGQALVEAAVAGF
CCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHCC
GITQIYDRVALPHVRAGRLVHLLPEADVDGPPVHAIISLGQKMTAKTRAAVNHLAETLQQ
CHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure 
SERVDAPINEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRA
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VRLTEDGETYLLAAQEALESLREAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFIQLRE
EEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH
KYPKLTVEMALTDRMSDPVGEGWDIVVRIGALPDDSEFTVRKLCDLRLGLYASPEYLARR
HCCCEEEEHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHC
GDVKTLAELTDHDAIVFRGPTGRLRSWTTRENDTVREIVPHPVLVLADGQALVEAAVAGF
CCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHCC
GITQIYDRVALPHVRAGRLVHLLPEADVDGPPVHAIISLGQKMTAKTRAAVNHLAETLQQ
CHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]