| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is cirA [H]
Identifier: 91782831
GI number: 91782831
Start: 1606386
End: 1609127
Strand: Direct
Name: cirA [H]
Synonym: Bxe_A2994
Alternate gene names: 91782831
Gene position: 1606386-1609127 (Clockwise)
Preceding gene: 91782830
Following gene: 91782832
Centisome position: 32.81
GC content: 61.85
Gene sequence:
>2742_bases ATGAAACAAAGGGCATTGGCGCTGGCCATTAGAAGAATAGTCTGGGCTGAACTGGCATTGTCGGCCGCAATCGCCGTTCC GGCGTTTGCGCAAAGCCAGCCGGCCACTACCGGCACCGCGGCGGGCGCGACGACGGAAAGCGCACCGGCAACGGGCGCTG CTGCCACACCGTCCACGGATAACAACACCGCGACGGCTGCCGGCAAAGGGGTTCAGCAACTCAAGAAATTTGAAGTGACC GGTTCGCTGATCCGCACGTCGGACAAGGTCGGCAACACGGAAGTGCAGACCATCACGCCCAAGGAAATCCAGCAAAGCGG TTATACGACCGTGGCCGACTTCCTGCGCGGCACATCCGCCAACTCGGGGAGCAGCTGGGGCCAAACGACGATGAACAGCT CCGCGCAAGGCGGCGGCGGCATTGCCTTGCGCGGTCTGAGCGAGAAATACACGCTGGTGCTGGTGGACGGGCAACGGGTG GCGAATTACGGCAAGGCGGTGAACTTCACCGACACGTTCTTCGACGTGAATTCGATCCCGCTCAACATGATCGACCACAT CGACATCGTGAAGACCGGTGCGGTGTCGGTGTATGGTTCGGATGCAATTGCAGGCGTTGTCAACATCATCACGAAGAAGG ACTTCCAGGGCTTGCAGATCGACGGCCAGCTCGGCAAGGCGCAGCATCCGGGCGACGCACAGGGCAACTTCAGCGTGCTC GGCGGTATCGGCGACCTGAATGGCGACCGCTTCAACGTGACGGCCGCCGCGAGCTATTACCGCGACACCGGCTCGTCGCT CGGCGATCGCGACATGACCGCGAATCAGGACTTCAGCCAGTTCCCGGGCGGCCTTGCTGGCCCGCTCGGTCCGAACCAGC AGTCGTACTGGACCACGGCCGACGGCACCAACATGGCGCTCAGCCCCTGTCCTCCGGGCAGCGTGTCGGCGAACGGCGCA TCCACGTGTAAATCGAATCCGGCCAGCACCACCTCGCTGGTACCGGCGATCACGCGCCTGAACGCGAAAGTGCGAGGCAC CTTCAAAGTCAACGACGATGTGCAGGCTTACGCCGACCTCTGGGTGAGCCGCAACGAAACCGTGCAGAACGAAGGCCCGG CTGTGCTGAGCAGCCAGACCAACGCGTTCAACCCGGCTACCGGTTCGGCGTTGCCGCTCTCGCGCACGGTCTCGGGCACC AACCCGTACAACCCGTTCGGCGTGCCCACGCTGATCAACTACACGTTCCCGAATACCGTGTCGGCGGATACGGTGTCGAC GTTCTGGCGTGCGATGACCGGTGTGAAGGGCTCGTTCACCACCGCCAAATTCGGCGATTGGGATTGGTCCGCGGATTACG GCCATTCGCAGAGCACGGTCGACACGACTTACGGCAACGCGCTGAATGTGGCAGGCGTCGAGAACATTCTGCAGAACGGC GTGTTCAACTTCTCGAACCCGTCGGCCACGCCGAATGGTTTGAACGGCGTCTTCCAGAACGACTATGAGCAGGCGATCTC GAAGCTGGACAGCGTGACGGCGAAAACTTCGACGGGCAACCTGTTCAATCTGCCGGGCGGCCCAGTCGGCGTCGGCTTCG GTACGGAATTCCGTCACGAGAGCAACCTGATCAACTCGCGCACGGATAGCGCGCTGGGGATTACGGCGCCGGCCAACGTG CAGACGGTCGACGGCGAGCGCAACGTAGCCGCCGTGTACTACCAGGTCGATATTCCGATCATCCACAACCTGACGTTCAC GCAAGCGGGCCGTTACGACCACTACAGCGATTTCGGCGGCGCCTTCTCGCCGAGCTTCGCGTTGCGCTTCCAGCCGGTCA AGATGCTCACGACGTATGCGTCGTACAGCCGTGGCTTCCGCGCGCCGACGCTGGTCGAAAACTCGCAGGCAACGTATCTG GCGCACCAGAACCTGGTGGACCCGAACGATCCGAGCGGCACGCCGACCAAGCACTTCACGACGGAACAGGTCAACGGCAA TCCGGCACTGCAGCCTGAGCATACGAAGAACTACAACATCGGCTTCGAGCTCTCGCCGGATTCGTCGACGGATATCGGCG CGGCGTTCTACAAGATTCACATCGACGGCGTGATCGGCACGAACGATCCGAATGCGGTGATGGATGCGAACAACCCGTCG AACGTGATCCGCAATCCGGACGGCACGGTGGCTTACATCAAGGAACAGTTCGTCAACCTCGGTTCGCTCGATACCGACGG CTTCGACATGAACTTCCGCAAGTCGGTCGGCACGAAGTACGGTACGTTCACGCTGGCAGGCGACTGGGCCTACGTGTGGC ACTTCAAGCTGAACAGCCCGGGTGCGCCCACGCAGGATTTCGCCGGCAACAACCTCGCGCTGCTGCAGCCGTTCGGTGCA TCCAATCCGCGCTGGAAGGGTAATACCAGCCTCTCGTGGGATTACCGCAAGCTGACCACCACGCTGACATGGCAGTACAC TGGTCCGTACACGAACGCGGTGGCGTCCGAGTTCGGCGACGGCGGCACGCTGTCGGTGGCGTCGTACAGCCAGTTCAACC TGATGGCCACGTATCGCGGCTTCAAGAACTGGACGATCTACGGCGGCATCAACAACATCTTCGATCGCAAGCCGCCGTTC GACGTGGAGTGGCAGGCCACCCCGGATATCACGGGCTACGACCAGTCGCTTTACACCAACATCGGCCGCTTCTTCCAGGT CGGTGCGTCGTACCGCTTCTGA
Upstream 100 bases:
>100_bases ACGGAGCGCGGCGCAAGATCGCCGTATATCGAGTGGAGAGGTTCACAAGACCTCTCATCACATACTGCTGTGGCCTTACT GACGAGCGAGAAGGGGAAAA
Downstream 100 bases:
>100_bases AGTCTTTGAGGTTTGTGGTTCACCGGCGGTCTGTCCAGTCGGTCGGCCGCTCCGGTTTCCGTTCAACGGTACCGGAGCGG CGCAGTTTTGTCAGGGACGT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 913; Mature: 913
Protein sequence:
>913_residues MKQRALALAIRRIVWAELALSAAIAVPAFAQSQPATTGTAAGATTESAPATGAAATPSTDNNTATAAGKGVQQLKKFEVT GSLIRTSDKVGNTEVQTITPKEIQQSGYTTVADFLRGTSANSGSSWGQTTMNSSAQGGGGIALRGLSEKYTLVLVDGQRV ANYGKAVNFTDTFFDVNSIPLNMIDHIDIVKTGAVSVYGSDAIAGVVNIITKKDFQGLQIDGQLGKAQHPGDAQGNFSVL GGIGDLNGDRFNVTAAASYYRDTGSSLGDRDMTANQDFSQFPGGLAGPLGPNQQSYWTTADGTNMALSPCPPGSVSANGA STCKSNPASTTSLVPAITRLNAKVRGTFKVNDDVQAYADLWVSRNETVQNEGPAVLSSQTNAFNPATGSALPLSRTVSGT NPYNPFGVPTLINYTFPNTVSADTVSTFWRAMTGVKGSFTTAKFGDWDWSADYGHSQSTVDTTYGNALNVAGVENILQNG VFNFSNPSATPNGLNGVFQNDYEQAISKLDSVTAKTSTGNLFNLPGGPVGVGFGTEFRHESNLINSRTDSALGITAPANV QTVDGERNVAAVYYQVDIPIIHNLTFTQAGRYDHYSDFGGAFSPSFALRFQPVKMLTTYASYSRGFRAPTLVENSQATYL AHQNLVDPNDPSGTPTKHFTTEQVNGNPALQPEHTKNYNIGFELSPDSSTDIGAAFYKIHIDGVIGTNDPNAVMDANNPS NVIRNPDGTVAYIKEQFVNLGSLDTDGFDMNFRKSVGTKYGTFTLAGDWAYVWHFKLNSPGAPTQDFAGNNLALLQPFGA SNPRWKGNTSLSWDYRKLTTTLTWQYTGPYTNAVASEFGDGGTLSVASYSQFNLMATYRGFKNWTIYGGINNIFDRKPPF DVEWQATPDITGYDQSLYTNIGRFFQVGASYRF
Sequences:
>Translated_913_residues MKQRALALAIRRIVWAELALSAAIAVPAFAQSQPATTGTAAGATTESAPATGAAATPSTDNNTATAAGKGVQQLKKFEVT GSLIRTSDKVGNTEVQTITPKEIQQSGYTTVADFLRGTSANSGSSWGQTTMNSSAQGGGGIALRGLSEKYTLVLVDGQRV ANYGKAVNFTDTFFDVNSIPLNMIDHIDIVKTGAVSVYGSDAIAGVVNIITKKDFQGLQIDGQLGKAQHPGDAQGNFSVL GGIGDLNGDRFNVTAAASYYRDTGSSLGDRDMTANQDFSQFPGGLAGPLGPNQQSYWTTADGTNMALSPCPPGSVSANGA STCKSNPASTTSLVPAITRLNAKVRGTFKVNDDVQAYADLWVSRNETVQNEGPAVLSSQTNAFNPATGSALPLSRTVSGT NPYNPFGVPTLINYTFPNTVSADTVSTFWRAMTGVKGSFTTAKFGDWDWSADYGHSQSTVDTTYGNALNVAGVENILQNG VFNFSNPSATPNGLNGVFQNDYEQAISKLDSVTAKTSTGNLFNLPGGPVGVGFGTEFRHESNLINSRTDSALGITAPANV QTVDGERNVAAVYYQVDIPIIHNLTFTQAGRYDHYSDFGGAFSPSFALRFQPVKMLTTYASYSRGFRAPTLVENSQATYL AHQNLVDPNDPSGTPTKHFTTEQVNGNPALQPEHTKNYNIGFELSPDSSTDIGAAFYKIHIDGVIGTNDPNAVMDANNPS NVIRNPDGTVAYIKEQFVNLGSLDTDGFDMNFRKSVGTKYGTFTLAGDWAYVWHFKLNSPGAPTQDFAGNNLALLQPFGA SNPRWKGNTSLSWDYRKLTTTLTWQYTGPYTNAVASEFGDGGTLSVASYSQFNLMATYRGFKNWTIYGGINNIFDRKPPF DVEWQATPDITGYDQSLYTNIGRFFQVGASYRF >Mature_913_residues MKQRALALAIRRIVWAELALSAAIAVPAFAQSQPATTGTAAGATTESAPATGAAATPSTDNNTATAAGKGVQQLKKFEVT GSLIRTSDKVGNTEVQTITPKEIQQSGYTTVADFLRGTSANSGSSWGQTTMNSSAQGGGGIALRGLSEKYTLVLVDGQRV ANYGKAVNFTDTFFDVNSIPLNMIDHIDIVKTGAVSVYGSDAIAGVVNIITKKDFQGLQIDGQLGKAQHPGDAQGNFSVL GGIGDLNGDRFNVTAAASYYRDTGSSLGDRDMTANQDFSQFPGGLAGPLGPNQQSYWTTADGTNMALSPCPPGSVSANGA STCKSNPASTTSLVPAITRLNAKVRGTFKVNDDVQAYADLWVSRNETVQNEGPAVLSSQTNAFNPATGSALPLSRTVSGT NPYNPFGVPTLINYTFPNTVSADTVSTFWRAMTGVKGSFTTAKFGDWDWSADYGHSQSTVDTTYGNALNVAGVENILQNG VFNFSNPSATPNGLNGVFQNDYEQAISKLDSVTAKTSTGNLFNLPGGPVGVGFGTEFRHESNLINSRTDSALGITAPANV QTVDGERNVAAVYYQVDIPIIHNLTFTQAGRYDHYSDFGGAFSPSFALRFQPVKMLTTYASYSRGFRAPTLVENSQATYL AHQNLVDPNDPSGTPTKHFTTEQVNGNPALQPEHTKNYNIGFELSPDSSTDIGAAFYKIHIDGVIGTNDPNAVMDANNPS NVIRNPDGTVAYIKEQFVNLGSLDTDGFDMNFRKSVGTKYGTFTLAGDWAYVWHFKLNSPGAPTQDFAGNNLALLQPFGA SNPRWKGNTSLSWDYRKLTTTLTWQYTGPYTNAVASEFGDGGTLSVASYSQFNLMATYRGFKNWTIYGGINNIFDRKPPF DVEWQATPDITGYDQSLYTNIGRFFQVGASYRF
Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=135, Percent_Identity=36.2962962962963, Blast_Score=81, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 97483; Mature: 97483
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQRALALAIRRIVWAELALSAAIAVPAFAQSQPATTGTAAGATTESAPATGAAATPSTD CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NNTATAAGKGVQQLKKFEVTGSLIRTSDKVGNTEVQTITPKEIQQSGYTTVADFLRGTSA CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHCCCC NSGSSWGQTTMNSSAQGGGGIALRGLSEKYTLVLVDGQRVANYGKAVNFTDTFFDVNSIP CCCCCCCCHHCCCCCCCCCCEEEEECCCCEEEEEECCHHHHCCCCEECCEEEEEECCCCC LNMIDHIDIVKTGAVSVYGSDAIAGVVNIITKKDFQGLQIDGQLGKAQHPGDAQGNFSVL CCHHCCEEEEECCEEEEECCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEE GGIGDLNGDRFNVTAAASYYRDTGSSLGDRDMTANQDFSQFPGGLAGPLGPNQQSYWTTA ECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEC DGTNMALSPCPPGSVSANGASTCKSNPASTTSLVPAITRLNAKVRGTFKVNDDVQAYADL CCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCHHHHHHH WVSRNETVQNEGPAVLSSQTNAFNPATGSALPLSRTVSGTNPYNPFGVPTLINYTFPNTV HHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCC SADTVSTFWRAMTGVKGSFTTAKFGDWDWSADYGHSQSTVDTTYGNALNVAGVENILQNG CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHCC VFNFSNPSATPNGLNGVFQNDYEQAISKLDSVTAKTSTGNLFNLPGGPVGVGFGTEFRHE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCEEECCCCCEEECCCCCCCHH SNLINSRTDSALGITAPANVQTVDGERNVAAVYYQVDIPIIHNLTFTQAGRYDHYSDFGG HCCCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEECCEEEECEEEECCCCCCCCCCCCC AFSPSFALRFQPVKMLTTYASYSRGFRAPTLVENSQATYLAHQNLVDPNDPSGTPTKHFT CCCCCEEEEECHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCEE TEQVNGNPALQPEHTKNYNIGFELSPDSSTDIGAAFYKIHIDGVIGTNDPNAVMDANNPS EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCEEEECCCCH NVIRNPDGTVAYIKEQFVNLGSLDTDGFDMNFRKSVGTKYGTFTLAGDWAYVWHFKLNSP HHCCCCCCCEEHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCEEEEECCEEEEEEEEECCC GAPTQDFAGNNLALLQPFGASNPRWKGNTSLSWDYRKLTTTLTWQYTGPYTNAVASEFGD CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHHHHCCC GGTLSVASYSQFNLMATYRGFKNWTIYGGINNIFDRKPPFDVEWQATPDITGYDQSLYTN CCEEEEECCCCEEEEEEECCCCCEEEECCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHH IGRFFQVGASYRF HHHHHCCCCCCCC >Mature Secondary Structure MKQRALALAIRRIVWAELALSAAIAVPAFAQSQPATTGTAAGATTESAPATGAAATPSTD CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NNTATAAGKGVQQLKKFEVTGSLIRTSDKVGNTEVQTITPKEIQQSGYTTVADFLRGTSA CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHCCCC NSGSSWGQTTMNSSAQGGGGIALRGLSEKYTLVLVDGQRVANYGKAVNFTDTFFDVNSIP CCCCCCCCHHCCCCCCCCCCEEEEECCCCEEEEEECCHHHHCCCCEECCEEEEEECCCCC LNMIDHIDIVKTGAVSVYGSDAIAGVVNIITKKDFQGLQIDGQLGKAQHPGDAQGNFSVL CCHHCCEEEEECCEEEEECCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEE GGIGDLNGDRFNVTAAASYYRDTGSSLGDRDMTANQDFSQFPGGLAGPLGPNQQSYWTTA ECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEC DGTNMALSPCPPGSVSANGASTCKSNPASTTSLVPAITRLNAKVRGTFKVNDDVQAYADL CCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCHHHHHHH WVSRNETVQNEGPAVLSSQTNAFNPATGSALPLSRTVSGTNPYNPFGVPTLINYTFPNTV HHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCC SADTVSTFWRAMTGVKGSFTTAKFGDWDWSADYGHSQSTVDTTYGNALNVAGVENILQNG CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHCC VFNFSNPSATPNGLNGVFQNDYEQAISKLDSVTAKTSTGNLFNLPGGPVGVGFGTEFRHE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCEEECCCCCEEECCCCCCCHH SNLINSRTDSALGITAPANVQTVDGERNVAAVYYQVDIPIIHNLTFTQAGRYDHYSDFGG HCCCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEECCEEEECEEEECCCCCCCCCCCCC AFSPSFALRFQPVKMLTTYASYSRGFRAPTLVENSQATYLAHQNLVDPNDPSGTPTKHFT CCCCCEEEEECHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCEE TEQVNGNPALQPEHTKNYNIGFELSPDSSTDIGAAFYKIHIDGVIGTNDPNAVMDANNPS EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCEEEECCCCH NVIRNPDGTVAYIKEQFVNLGSLDTDGFDMNFRKSVGTKYGTFTLAGDWAYVWHFKLNSP HHCCCCCCCEEHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCEEEEECCEEEEEEEEECCC GAPTQDFAGNNLALLQPFGASNPRWKGNTSLSWDYRKLTTTLTWQYTGPYTNAVASEFGD CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHHHHCCC GGTLSVASYSQFNLMATYRGFKNWTIYGGINNIFDRKPPFDVEWQATPDITGYDQSLYTN CCEEEEECCCCEEEEEEECCCCCEEEECCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHH IGRFFQVGASYRF HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]