| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91782822
Identifier: 91782822
GI number: 91782822
Start: 1592393
End: 1593949
Strand: Direct
Name: 91782822
Synonym: Bxe_A3003
Alternate gene names: NA
Gene position: 1592393-1593949 (Clockwise)
Preceding gene: 91782821
Following gene: 91782823
Centisome position: 32.53
GC content: 65.57
Gene sequence:
>1557_bases ATGAATCGCTATCGTTCGCTGGGGGTCGTGACCGGTGCCGCCCAGGTTGCCAGTGCCGACGTGCTGTGCAGAATGAGCGC CGCCTGGCAACGGCGCGGTGCGGCGCGGCCGTTCGATCTCCTTCTGGAGCGGCACTCGTGGCAAGGGCCGGCCTCGCAGC GCGAAGTGGATGCGCAGTTCAAGATCCATGTGTTCGACACCATGCGGGCGTTCGAAAAACGCGGAGTCGAAGCGATCGTG TTGCCGTGCTTCCTTAGCCATACCTTCATCGACGAACTTTCTGCAAACGTGGCCGTGCCGGTCGCCAACATCATGACGGC GCTCTCGGCGCACGTGCGGCGAGCATTTCCGTCGGTGCGCCGGGTCGGCGTGCTCACTTCGGATGCCATTCGCGATAACG GCCTTTTCGAGCGTTATTTCGACGCCGCGCGGTTCGACGTGCTGCATCCGCGCAACGAAGCGGGCTTCGATTGCGTGACG AGCGCCGTCTATAGCGACGAAGGCATCAGGAGCGGCTGTCTCTATGGCCGGCCGGTCGAGTTGTTGCGCGCGGCGTGCGC GGATCTCATTGCGCAAGGGGCGGAGATCATCCTGCCGGGGCTCGTAGAAATCGCGCTGGTCGCGCGCGCACTCGGGCGGC TCGAGGTGCCGCTCGTCGACGTCAATCTGGTGTACGCGCGCTATGTCGCGGCAGCCCAGTATTCGCAGCAGGAGCGGCGC TTCAAGGTGGGCGTGCTGGGCGGCGTCGGGCCGGCGGCGACGGTCGATTTCATGGCCAAGCTGGTACGCAACACGCCGGC CGCATGCGATCAGGATCACATCAAGGTCATGGTCGAGCAGAACCCGCAGATTCCGGACCGCACCGCCGCGCTGCTCGGTA GCGGAGAGGATCCGACGCTCGCGCTATATGCCGCCTGCAGGACGCTCGAAGACGGCGGTGCGGACCTGATCGCGATTCCG TGCAATACGGCGCATGCGTTCGTCGAGCGGATCCAGCCGTCGCTCGGCATTCCGATCGTCAATATGCTGACCTGTACCGC CGATTATCTGCGCGAGACCTTTCCGGGCTTGCGTGAAATCGGCGTGCTGGCCACCACGGGCACGCTGGCGAGCCGCGTCT ATGAACAGTCGCTCGAAGCGCGCGGTTTCGTGCAGATCGTGCCCGGCGAGCAGGCTCAGGCGCGGCTGATGCATGCCGTC TACGGACCGAAGGGCGCCAAGGCGGGGTTCACCTCGGGCGAGTGCCGCGACGACCTCGCCGCGGCGGTCGACGACCTGAT CGCGCAAGGCGTGCAAGTGATCGTGCTGGGTTGTACCGAATTGCCGCTGCTGTTGCGCGACGCCGCGCTGGCTTGTGCGG CCGGGCGGGTGGTAAGGCTTGTCGATCCGACCGAGGTGCTGGCGAAACGCTGCGTGGCGTATGCGCTGGGTGAGCGCGGG GCGCCGCGTTTCCACCACAATGCCCAGAGGACGAGCGCGATCAGTACTGTTGCATCCAGTGCGCCCGGTATGGGCAACGG GTCGGCCCACTTGTCCCTGTTTGTCGACGGGGAATAG
Upstream 100 bases:
>100_bases GTGGTTAACCCCACGTCATAGTCCCCCGACATAATGTCATCCTCACTGGCGCAAAAGCCGCCTACCATCAAAGCGGAAGG CAAAAACGGGGGAAGTCATC
Downstream 100 bases:
>100_bases TAAGGCGTGCCGCTGCCATAAGCCTGCGCCAGATTGCACACGTTGACCGCACCTGTGGCAAGCAGGACGGCACACACCGC AACAACGGACAGGACGCGTT
Product: aspartate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MNRYRSLGVVTGAAQVASADVLCRMSAAWQRRGAARPFDLLLERHSWQGPASQREVDAQFKIHVFDTMRAFEKRGVEAIV LPCFLSHTFIDELSANVAVPVANIMTALSAHVRRAFPSVRRVGVLTSDAIRDNGLFERYFDAARFDVLHPRNEAGFDCVT SAVYSDEGIRSGCLYGRPVELLRAACADLIAQGAEIILPGLVEIALVARALGRLEVPLVDVNLVYARYVAAAQYSQQERR FKVGVLGGVGPAATVDFMAKLVRNTPAACDQDHIKVMVEQNPQIPDRTAALLGSGEDPTLALYAACRTLEDGGADLIAIP CNTAHAFVERIQPSLGIPIVNMLTCTADYLRETFPGLREIGVLATTGTLASRVYEQSLEARGFVQIVPGEQAQARLMHAV YGPKGAKAGFTSGECRDDLAAAVDDLIAQGVQVIVLGCTELPLLLRDAALACAAGRVVRLVDPTEVLAKRCVAYALGERG APRFHHNAQRTSAISTVASSAPGMGNGSAHLSLFVDGE
Sequences:
>Translated_518_residues MNRYRSLGVVTGAAQVASADVLCRMSAAWQRRGAARPFDLLLERHSWQGPASQREVDAQFKIHVFDTMRAFEKRGVEAIV LPCFLSHTFIDELSANVAVPVANIMTALSAHVRRAFPSVRRVGVLTSDAIRDNGLFERYFDAARFDVLHPRNEAGFDCVT SAVYSDEGIRSGCLYGRPVELLRAACADLIAQGAEIILPGLVEIALVARALGRLEVPLVDVNLVYARYVAAAQYSQQERR FKVGVLGGVGPAATVDFMAKLVRNTPAACDQDHIKVMVEQNPQIPDRTAALLGSGEDPTLALYAACRTLEDGGADLIAIP CNTAHAFVERIQPSLGIPIVNMLTCTADYLRETFPGLREIGVLATTGTLASRVYEQSLEARGFVQIVPGEQAQARLMHAV YGPKGAKAGFTSGECRDDLAAAVDDLIAQGVQVIVLGCTELPLLLRDAALACAAGRVVRLVDPTEVLAKRCVAYALGERG APRFHHNAQRTSAISTVASSAPGMGNGSAHLSLFVDGE >Mature_518_residues MNRYRSLGVVTGAAQVASADVLCRMSAAWQRRGAARPFDLLLERHSWQGPASQREVDAQFKIHVFDTMRAFEKRGVEAIV LPCFLSHTFIDELSANVAVPVANIMTALSAHVRRAFPSVRRVGVLTSDAIRDNGLFERYFDAARFDVLHPRNEAGFDCVT SAVYSDEGIRSGCLYGRPVELLRAACADLIAQGAEIILPGLVEIALVARALGRLEVPLVDVNLVYARYVAAAQYSQQERR FKVGVLGGVGPAATVDFMAKLVRNTPAACDQDHIKVMVEQNPQIPDRTAALLGSGEDPTLALYAACRTLEDGGADLIAIP CNTAHAFVERIQPSLGIPIVNMLTCTADYLRETFPGLREIGVLATTGTLASRVYEQSLEARGFVQIVPGEQAQARLMHAV YGPKGAKAGFTSGECRDDLAAAVDDLIAQGVQVIVLGCTELPLLLRDAALACAAGRVVRLVDPTEVLAKRCVAYALGERG APRFHHNAQRTSAISTVASSAPGMGNGSAHLSLFVDGE
Specific function: Unknown
COG id: COG1794
COG function: function code M; Aspartate racemase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004380 [H]
Pfam domain/function: PF01177 Asp_Glu_race [H]
EC number: =5.1.1.13 [H]
Molecular weight: Translated: 55561; Mature: 55561
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRYRSLGVVTGAAQVASADVLCRMSAAWQRRGAARPFDLLLERHSWQGPASQREVDAQF CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCEE KIHVFDTMRAFEKRGVEAIVLPCFLSHTFIDELSANVAVPVANIMTALSAHVRRAFPSVR EEEHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH RVGVLTSDAIRDNGLFERYFDAARFDVLHPRNEAGFDCVTSAVYSDEGIRSGCLYGRPVE HHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH LLRAACADLIAQGAEIILPGLVEIALVARALGRLEVPLVDVNLVYARYVAAAQYSQQERR HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHC FKVGVLGGVGPAATVDFMAKLVRNTPAACDQDHIKVMVEQNPQIPDRTAALLGSGEDPTL EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCHH ALYAACRTLEDGGADLIAIPCNTAHAFVERIQPSLGIPIVNMLTCTADYLRETFPGLREI HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHC GVLATTGTLASRVYEQSLEARGFVQIVPGEQAQARLMHAVYGPKGAKAGFTSGECRDDLA CCEEEHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH AAVDDLIAQGVQVIVLGCTELPLLLRDAALACAAGRVVRLVDPTEVLAKRCVAYALGERG HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCC APRFHHNAQRTSAISTVASSAPGMGNGSAHLSLFVDGE CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MNRYRSLGVVTGAAQVASADVLCRMSAAWQRRGAARPFDLLLERHSWQGPASQREVDAQF CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCEE KIHVFDTMRAFEKRGVEAIVLPCFLSHTFIDELSANVAVPVANIMTALSAHVRRAFPSVR EEEHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH RVGVLTSDAIRDNGLFERYFDAARFDVLHPRNEAGFDCVTSAVYSDEGIRSGCLYGRPVE HHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH LLRAACADLIAQGAEIILPGLVEIALVARALGRLEVPLVDVNLVYARYVAAAQYSQQERR HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHC FKVGVLGGVGPAATVDFMAKLVRNTPAACDQDHIKVMVEQNPQIPDRTAALLGSGEDPTL EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCHH ALYAACRTLEDGGADLIAIPCNTAHAFVERIQPSLGIPIVNMLTCTADYLRETFPGLREI HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHC GVLATTGTLASRVYEQSLEARGFVQIVPGEQAQARLMHAVYGPKGAKAGFTSGECRDDLA CCEEEHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH AAVDDLIAQGVQVIVLGCTELPLLLRDAALACAAGRVVRLVDPTEVLAKRCVAYALGERG HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCC APRFHHNAQRTSAISTVASSAPGMGNGSAHLSLFVDGE CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2054383; 1907199 [H]