Click here to switch to the map view.

The map label for this gene is aidB [H]

Identifier: 91782819

GI number: 91782819

Start: 1587868

End: 1589631

Strand: Direct

Name: aidB [H]

Synonym: Bxe_A3006

Alternate gene names: 91782819

Gene position: 1587868-1589631 (Clockwise)

Preceding gene: 91782817

Following gene: 91782820

Centisome position: 32.43

GC content: 66.44

Gene sequence:

>1764_bases
ATGAGCGACATCACCGCGCAGCCGGCACACGGCTCGTCCAACATTCCCGACAGCCGGGGCATCAACTTCTTCACCAGCGA
TCCCGACTTCGAGCGTCTGCTCAAGCTGCATCTCGGCGAGGCGCTGTTTCACGAACTCGAAGGCCAGCTCGTTTCGCTGG
GCCAGCGCGCGTCCGACGAACTCGATATCTGGGCCGCGTCCGCCGACAGGAATCCGCCGCAATTGCGCCATCGCACGCGG
CGCGGCGAAGCGCTGCAAAGTATCGACAAGCACCCCGATTACGTCGCGCTGGAACGCGTGGCTTACGCGGAGCTGGGACT
TGCCGCGCTGAGTCACGAGACCCGTGACGGCAAACAGTCGCCGCCGCCGCTCGTCAAATACGCGCTGACGTTCCTGTTCG
TGCAGGCGGAATTCGGCCTGTGCTGTCCCGTCAGCATGACCGATTCGCTCACGCGCACGCTGCGCAAATTCGGCGCGCCG
GAACTGGTCGCGCGTTTTCTGCCGAGGCTCGCCTCGCGCGATTTCGACACACTGTTTCAGGGCGCGATGTTCATGACGGA
ACAGGCGGCGGGCTCGGACGTCGCGCGCATTGCGACGCGTGCGTCGCTCGAGACCGAAGCGGATGGGCAAACGTGGCGCC
TGTACGGCGACAAATGGTTCTGCTCGAATGCCGACGCCGATCTCGCGATGGTGCTCGCGCGCCCGGACACGGCGCCGCCC
GGCATCAACGGACTCGGCCTGTTCCTGCTGCCGAAGACGCTGCCGGACGGCTCGCGCAATAGCTACCGGATCGTGCGTCT
GAAGGACAAGCTCGGCAGCCGCTCGATGGCGAGCGGCGAGATCGTGCTGGAAGGCGCGGTGGCGTATCTGATCGGCGAGG
TAGGGCGCGGTTTTCATCAGATGGCGGACATGATCAACATGTCGCGGCTGTCGAACGGCGTGCGCGCCGCGGGTTTGATG
CGCCGCGCGCTGACGGAGGCGCTGCATATTGCCCGCAATCGCGAAGCGTTCGGCCGCAAGCTGATCGATATGCCGTTGAT
GCAGCGTCAGTTGCTCAAGATGATGCTGCCCGCCGAACAGGCGCGCTCGATGTTCATGCGCATCGCGCTGCTGTTGCAGC
AGGCCGACGCGGGCGACCGCCAGGCCGCGAAATGCGTGCGCATTCTCACGCCGCTGATCAAGTTCCGCGCCTGCCGCGAC
GCGCGCCGCGTAACCGGCGACGCAATGGAAGTGCGCGGCGGCACCGGCTATATCGAAGAATGGAGCGACGCGCGTCTCGT
GCGTGATGCGCATCTCGGCTCGATCTGGGAAGGCACCAGCAACATCGTCGCGCTCGATATCGCGCGGGCGGCGAAACGCG
ACGGCGCACTCGAACCGTTGCGCGCTTATCTGCAGGATCTGCTCGGCGCGGCGGGATTGCCGCCGGCCAGTCTCGCGTTG
CTGCGCTCGACGCTCGCGCGTGCGTGCGATGCGCTGGCCGGCGTGGCGGATTCCGGTCGCGACGAATGGGTCCGGCAAGC
GGGCACCGCGTTGTATCACGCAACGACAGCCGTGCTGATGGCCTGCGAAGGCGTGCGTCTTGCGCCGGACTACCGGCGCC
TCGCGCTCGCGCATCTGGTGGTGCGGCACAAGCTGTTGCCGTCCGATCCGCTGGCGTTGCAGCCGGAGCAGGACGAAAGC
GAGGTGATCGACGCGCTGGTCAAAGGCCGCAGCGTCACGCTCGTGCAGGCGTTGCAACTGTTGCCGCGCGGGGGCGCGCA
ATGA

Upstream 100 bases:

>100_bases
ACGATTATCGACGCGGCTTTTATGCTCCTTTCACTTGCACTACGTGCAGGGACCAGAGTAATGCGCCAAAGCGCGAACTC
TGGCGATAAAGGAGACACGC

Downstream 100 bases:

>100_bases
CGGCACCCGTGAATGCCGGCACACAAGGCGCGCTGCAAGGCATCAAGGTGATCGACCTGAGCCGCGTGCTCGGCGGCCCG
TACTGCACCCAGGCGCTCGC

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 587; Mature: 586

Protein sequence:

>587_residues
MSDITAQPAHGSSNIPDSRGINFFTSDPDFERLLKLHLGEALFHELEGQLVSLGQRASDELDIWAASADRNPPQLRHRTR
RGEALQSIDKHPDYVALERVAYAELGLAALSHETRDGKQSPPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGAP
ELVARFLPRLASRDFDTLFQGAMFMTEQAAGSDVARIATRASLETEADGQTWRLYGDKWFCSNADADLAMVLARPDTAPP
GINGLGLFLLPKTLPDGSRNSYRIVRLKDKLGSRSMASGEIVLEGAVAYLIGEVGRGFHQMADMINMSRLSNGVRAAGLM
RRALTEALHIARNREAFGRKLIDMPLMQRQLLKMMLPAEQARSMFMRIALLLQQADAGDRQAAKCVRILTPLIKFRACRD
ARRVTGDAMEVRGGTGYIEEWSDARLVRDAHLGSIWEGTSNIVALDIARAAKRDGALEPLRAYLQDLLGAAGLPPASLAL
LRSTLARACDALAGVADSGRDEWVRQAGTALYHATTAVLMACEGVRLAPDYRRLALAHLVVRHKLLPSDPLALQPEQDES
EVIDALVKGRSVTLVQALQLLPRGGAQ

Sequences:

>Translated_587_residues
MSDITAQPAHGSSNIPDSRGINFFTSDPDFERLLKLHLGEALFHELEGQLVSLGQRASDELDIWAASADRNPPQLRHRTR
RGEALQSIDKHPDYVALERVAYAELGLAALSHETRDGKQSPPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGAP
ELVARFLPRLASRDFDTLFQGAMFMTEQAAGSDVARIATRASLETEADGQTWRLYGDKWFCSNADADLAMVLARPDTAPP
GINGLGLFLLPKTLPDGSRNSYRIVRLKDKLGSRSMASGEIVLEGAVAYLIGEVGRGFHQMADMINMSRLSNGVRAAGLM
RRALTEALHIARNREAFGRKLIDMPLMQRQLLKMMLPAEQARSMFMRIALLLQQADAGDRQAAKCVRILTPLIKFRACRD
ARRVTGDAMEVRGGTGYIEEWSDARLVRDAHLGSIWEGTSNIVALDIARAAKRDGALEPLRAYLQDLLGAAGLPPASLAL
LRSTLARACDALAGVADSGRDEWVRQAGTALYHATTAVLMACEGVRLAPDYRRLALAHLVVRHKLLPSDPLALQPEQDES
EVIDALVKGRSVTLVQALQLLPRGGAQ
>Mature_586_residues
SDITAQPAHGSSNIPDSRGINFFTSDPDFERLLKLHLGEALFHELEGQLVSLGQRASDELDIWAASADRNPPQLRHRTRR
GEALQSIDKHPDYVALERVAYAELGLAALSHETRDGKQSPPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGAPE
LVARFLPRLASRDFDTLFQGAMFMTEQAAGSDVARIATRASLETEADGQTWRLYGDKWFCSNADADLAMVLARPDTAPPG
INGLGLFLLPKTLPDGSRNSYRIVRLKDKLGSRSMASGEIVLEGAVAYLIGEVGRGFHQMADMINMSRLSNGVRAAGLMR
RALTEALHIARNREAFGRKLIDMPLMQRQLLKMMLPAEQARSMFMRIALLLQQADAGDRQAAKCVRILTPLIKFRACRDA
RRVTGDAMEVRGGTGYIEEWSDARLVRDAHLGSIWEGTSNIVALDIARAAKRDGALEPLRAYLQDLLGAAGLPPASLALL
RSTLARACDALAGVADSGRDEWVRQAGTALYHATTAVLMACEGVRLAPDYRRLALAHLVVRHKLLPSDPLALQPEQDESE
VIDALVKGRSVTLVQALQLLPRGGAQ

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958414, Length=295, Percent_Identity=29.8305084745763, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI226958412, Length=295, Percent_Identity=29.8305084745763, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI4501859, Length=321, Percent_Identity=27.4143302180685, Blast_Score=109, Evalue=7e-24,
Organism=Homo sapiens, GI4557233, Length=317, Percent_Identity=29.9684542586751, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI21361497, Length=323, Percent_Identity=28.4829721362229, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI4557235, Length=327, Percent_Identity=26.9113149847095, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI76496475, Length=327, Percent_Identity=26.9113149847095, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI187960098, Length=275, Percent_Identity=30.9090909090909, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI4557231, Length=275, Percent_Identity=30.9090909090909, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI4501857, Length=301, Percent_Identity=26.9102990033223, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI7656849, Length=311, Percent_Identity=24.7588424437299, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87082384, Length=426, Percent_Identity=34.7417840375587, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI87081958, Length=310, Percent_Identity=27.0967741935484, Blast_Score=80, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI86563381, Length=462, Percent_Identity=31.6017316017316, Blast_Score=218, Evalue=9e-57,
Organism=Caenorhabditis elegans, GI86563383, Length=462, Percent_Identity=31.6017316017316, Blast_Score=217, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17538396, Length=301, Percent_Identity=30.5647840531561, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17508101, Length=298, Percent_Identity=26.8456375838926, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17506239, Length=311, Percent_Identity=26.3665594855305, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17505929, Length=313, Percent_Identity=29.3929712460064, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17551932, Length=313, Percent_Identity=29.3929712460064, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17570075, Length=295, Percent_Identity=27.7966101694915, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17533517, Length=354, Percent_Identity=25.4237288135593, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71985184, Length=292, Percent_Identity=25.6849315068493, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17569725, Length=271, Percent_Identity=27.3062730627306, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=240, Percent_Identity=24.1666666666667, Blast_Score=76, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17534899, Length=273, Percent_Identity=26.7399267399267, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI32563615, Length=209, Percent_Identity=25.3588516746411, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982178, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281363737, Length=350, Percent_Identity=25.7142857142857, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21355753, Length=294, Percent_Identity=28.5714285714286, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24666513, Length=317, Percent_Identity=25.5520504731861, Blast_Score=106, Evalue=5e-23,
Organism=Drosophila melanogaster, GI21356377, Length=285, Percent_Identity=27.719298245614, Blast_Score=93, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24660351, Length=299, Percent_Identity=29.7658862876254, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24646207, Length=274, Percent_Identity=27.007299270073, Blast_Score=87, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 64272; Mature: 64141

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDITAQPAHGSSNIPDSRGINFFTSDPDFERLLKLHLGEALFHELEGQLVSLGQRASDE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LDIWAASADRNPPQLRHRTRRGEALQSIDKHPDYVALERVAYAELGLAALSHETRDGKQS
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGAPELVARFLPRLASRDFDTLFQ
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHH
GAMFMTEQAAGSDVARIATRASLETEADGQTWRLYGDKWFCSNADADLAMVLARPDTAPP
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEECCCCCCEEEEEECCCCCCC
GINGLGLFLLPKTLPDGSRNSYRIVRLKDKLGSRSMASGEIVLEGAVAYLIGEVGRGFHQ
CCCCCEEEEEECCCCCCCCCCEEEEEEHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
MADMINMSRLSNGVRAAGLMRRALTEALHIARNREAFGRKLIDMPLMQRQLLKMMLPAEQ
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHH
ARSMFMRIALLLQQADAGDRQAAKCVRILTPLIKFRACRDARRVTGDAMEVRGGTGYIEE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHC
WSDARLVRDAHLGSIWEGTSNIVALDIARAAKRDGALEPLRAYLQDLLGAAGLPPASLAL
CCCHHHHHHHHCCCHHCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH
LRSTLARACDALAGVADSGRDEWVRQAGTALYHATTAVLMACEGVRLAPDYRRLALAHLV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
VRHKLLPSDPLALQPEQDESEVIDALVKGRSVTLVQALQLLPRGGAQ
HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDITAQPAHGSSNIPDSRGINFFTSDPDFERLLKLHLGEALFHELEGQLVSLGQRASDE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LDIWAASADRNPPQLRHRTRRGEALQSIDKHPDYVALERVAYAELGLAALSHETRDGKQS
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGAPELVARFLPRLASRDFDTLFQ
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHH
GAMFMTEQAAGSDVARIATRASLETEADGQTWRLYGDKWFCSNADADLAMVLARPDTAPP
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEECCCCCCEEEEEECCCCCCC
GINGLGLFLLPKTLPDGSRNSYRIVRLKDKLGSRSMASGEIVLEGAVAYLIGEVGRGFHQ
CCCCCEEEEEECCCCCCCCCCEEEEEEHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
MADMINMSRLSNGVRAAGLMRRALTEALHIARNREAFGRKLIDMPLMQRQLLKMMLPAEQ
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHH
ARSMFMRIALLLQQADAGDRQAAKCVRILTPLIKFRACRDARRVTGDAMEVRGGTGYIEE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHC
WSDARLVRDAHLGSIWEGTSNIVALDIARAAKRDGALEPLRAYLQDLLGAAGLPPASLAL
CCCHHHHHHHHCCCHHCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH
LRSTLARACDALAGVADSGRDEWVRQAGTALYHATTAVLMACEGVRLAPDYRRLALAHLV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
VRHKLLPSDPLALQPEQDESEVIDALVKGRSVTLVQALQLLPRGGAQ
HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]