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The map label for this gene is yfdE [H]

Identifier: 91782820

GI number: 91782820

Start: 1589628

End: 1590845

Strand: Direct

Name: yfdE [H]

Synonym: Bxe_A3005

Alternate gene names: 91782820

Gene position: 1589628-1590845 (Clockwise)

Preceding gene: 91782819

Following gene: 91782821

Centisome position: 32.47

GC content: 67.9

Gene sequence:

>1218_bases
ATGACGGCACCCGTGAATGCCGGCACACAAGGCGCGCTGCAAGGCATCAAGGTGATCGACCTGAGCCGCGTGCTCGGCGG
CCCGTACTGCACCCAGGCGCTCGCCGATCACGGCGCGCAGGTGATCAAGCTCGAACCGCCGGACGGCGACGAAACACGCG
GCTGGGGGCCGCCGTTCTATGGCGACACCGCATGGTATTTCGCCGGCGTGAACCGCAACAAGCAGGGCATCGCGGTCGAT
CTTTCACGCGACGAAGGCCGCGCGATTCTCTGGAAGCTGCTCGAAGACGCCGACGTGCTGGTCGAAAACTTCAAACCCGG
CACGCTGGCGCGCTGGGGCATGGACTACGAGCGCGATTTGCGCGAGCGTTTCCCGAAGCTGATTCATTGCGCCGTGTCGG
GGTTCGGTCCCGATGGCCCGCTCGGCGGCCTGCCTGGCTACGATGCCGCGATTCAGGCAATGACCGGCCTGATGAGCGTG
AACGGCGAGCGCGACGGCCCCGCCATGCGCGTCGGCTTGCCGGTGGTCGACATGGTCACCGGCCTGAATGCGTTCGCCGG
CGTTCTGCTCGCGCTCGCCGAGCGCGCGAAGAGCGGCCGTGGCCAGTCGATCGATATCGCGCTGTACGACTGCGGCGTTT
CACTGCTGCATCCGCATCTGCCGAACTATTTCGGCTCGGGCCGCACGCCGCAGCGCAGCGGCAACGCGCATCCCAACATC
ACGCCATACGACAGCTATCGCACCGCGAGCGCGCCGATCTTTCTCGCGGTGGGCAACGACCGGCAGTTCGCGAAGCTCTG
CGCGCATCTCGGCGCGCCCGAACTCGCCGACGATCCGCGTTATGTCGACAACCGCAGCCGCTGCGCGCATCGCGAGCCGC
TCAAGGCCGCGCTGGAAAGCCTGCTCGCCGCGCACGACTGCGAACCGCTCGCGCACGCGCTGATCAACGCGGGCGTGCCG
TGCGGACCGGTGCAAACCGTGGACGTGGTGGCGCGGCATCCGCACACCTTGCATCGCGGCATGGTGGTCGAGATGGGCGA
GTATCGCGGCACCGCGTCGCCGATCAAGCTGTCGCGCACGCCGGCCACGTATCGCAGCGCGCCGCCGTCGCTCGGTGCCG
ACACGCGCGACGTGCTCGACGCATTGGGTATCGACGCCGCCACCCAGCGGCGTCTGTTCGAAGCGGGCGTGCTGAAAGCG
GGCGCACCTGAAGCATAA

Upstream 100 bases:

>100_bases
AGCCGGAGCAGGACGAAAGCGAGGTGATCGACGCGCTGGTCAAAGGCCGCAGCGTCACGCTCGTGCAGGCGTTGCAACTG
TTGCCGCGCGGGGGCGCGCA

Downstream 100 bases:

>100_bases
GCGCAGCAGTTCCCGGTGACGGCACGAAGAAGCCGCGCCATCCAGAAGAACGACCTTGGAGACACAGACATGAATCGCGA
GCCAGACGTCCACGCCGCAG

Product: putative L-carnitine dehydratase/bileacid- inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTAPVNAGTQGALQGIKVIDLSRVLGGPYCTQALADHGAQVIKLEPPDGDETRGWGPPFYGDTAWYFAGVNRNKQGIAVD
LSRDEGRAILWKLLEDADVLVENFKPGTLARWGMDYERDLRERFPKLIHCAVSGFGPDGPLGGLPGYDAAIQAMTGLMSV
NGERDGPAMRVGLPVVDMVTGLNAFAGVLLALAERAKSGRGQSIDIALYDCGVSLLHPHLPNYFGSGRTPQRSGNAHPNI
TPYDSYRTASAPIFLAVGNDRQFAKLCAHLGAPELADDPRYVDNRSRCAHREPLKAALESLLAAHDCEPLAHALINAGVP
CGPVQTVDVVARHPHTLHRGMVVEMGEYRGTASPIKLSRTPATYRSAPPSLGADTRDVLDALGIDAATQRRLFEAGVLKA
GAPEA

Sequences:

>Translated_405_residues
MTAPVNAGTQGALQGIKVIDLSRVLGGPYCTQALADHGAQVIKLEPPDGDETRGWGPPFYGDTAWYFAGVNRNKQGIAVD
LSRDEGRAILWKLLEDADVLVENFKPGTLARWGMDYERDLRERFPKLIHCAVSGFGPDGPLGGLPGYDAAIQAMTGLMSV
NGERDGPAMRVGLPVVDMVTGLNAFAGVLLALAERAKSGRGQSIDIALYDCGVSLLHPHLPNYFGSGRTPQRSGNAHPNI
TPYDSYRTASAPIFLAVGNDRQFAKLCAHLGAPELADDPRYVDNRSRCAHREPLKAALESLLAAHDCEPLAHALINAGVP
CGPVQTVDVVARHPHTLHRGMVVEMGEYRGTASPIKLSRTPATYRSAPPSLGADTRDVLDALGIDAATQRRLFEAGVLKA
GAPEA
>Mature_404_residues
TAPVNAGTQGALQGIKVIDLSRVLGGPYCTQALADHGAQVIKLEPPDGDETRGWGPPFYGDTAWYFAGVNRNKQGIAVDL
SRDEGRAILWKLLEDADVLVENFKPGTLARWGMDYERDLRERFPKLIHCAVSGFGPDGPLGGLPGYDAAIQAMTGLMSVN
GERDGPAMRVGLPVVDMVTGLNAFAGVLLALAERAKSGRGQSIDIALYDCGVSLLHPHLPNYFGSGRTPQRSGNAHPNIT
PYDSYRTASAPIFLAVGNDRQFAKLCAHLGAPELADDPRYVDNRSRCAHREPLKAALESLLAAHDCEPLAHALINAGVPC
GPVQTVDVVARHPHTLHRGMVVEMGEYRGTASPIKLSRTPATYRSAPPSLGADTRDVLDALGIDAATQRRLFEAGVLKAG
APEA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=36.3867684478371, Blast_Score=262, Evalue=5e-70,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=34.1288782816229, Blast_Score=248, Evalue=9e-66,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=32.824427480916, Blast_Score=211, Evalue=8e-55,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=30.5489260143198, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI42794625, Length=403, Percent_Identity=26.302729528536, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266456254, Length=382, Percent_Identity=27.2251308900524, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=30.5019305019305, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI266458393, Length=259, Percent_Identity=30.5019305019305, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=33.1034482758621, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=33.1034482758621, Blast_Score=79, Evalue=9e-15,
Organism=Escherichia coli, GI87082093, Length=355, Percent_Identity=39.7183098591549, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI1788717, Length=400, Percent_Identity=31.25, Blast_Score=158, Evalue=7e-40,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=26.4851485148515, Blast_Score=116, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI115535051, Length=307, Percent_Identity=25.7328990228013, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI32564160, Length=219, Percent_Identity=28.310502283105, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648431, Length=378, Percent_Identity=41.2698412698413, Blast_Score=273, Evalue=1e-73,
Organism=Drosophila melanogaster, GI24585488, Length=393, Percent_Identity=25.6997455470738, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43206; Mature: 43074

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPVNAGTQGALQGIKVIDLSRVLGGPYCTQALADHGAQVIKLEPPDGDETRGWGPPFY
CCCCCCCCCHHHHCCCCEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
GDTAWYFAGVNRNKQGIAVDLSRDEGRAILWKLLEDADVLVENFKPGTLARWGMDYERDL
CCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHH
RERFPKLIHCAVSGFGPDGPLGGLPGYDAAIQAMTGLMSVNGERDGPAMRVGLPVVDMVT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH
GLNAFAGVLLALAERAKSGRGQSIDIALYDCGVSLLHPHLPNYFGSGRTPQRSGNAHPNI
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
TPYDSYRTASAPIFLAVGNDRQFAKLCAHLGAPELADDPRYVDNRSRCAHREPLKAALES
CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH
LLAAHDCEPLAHALINAGVPCGPVQTVDVVARHPHTLHRGMVVEMGEYRGTASPIKLSRT
HHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCEEEEECCCCCCCCCEEECCC
PATYRSAPPSLGADTRDVLDALGIDAATQRRLFEAGVLKAGAPEA
CCHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TAPVNAGTQGALQGIKVIDLSRVLGGPYCTQALADHGAQVIKLEPPDGDETRGWGPPFY
CCCCCCCCHHHHCCCCEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
GDTAWYFAGVNRNKQGIAVDLSRDEGRAILWKLLEDADVLVENFKPGTLARWGMDYERDL
CCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHH
RERFPKLIHCAVSGFGPDGPLGGLPGYDAAIQAMTGLMSVNGERDGPAMRVGLPVVDMVT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH
GLNAFAGVLLALAERAKSGRGQSIDIALYDCGVSLLHPHLPNYFGSGRTPQRSGNAHPNI
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
TPYDSYRTASAPIFLAVGNDRQFAKLCAHLGAPELADDPRYVDNRSRCAHREPLKAALES
CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH
LLAAHDCEPLAHALINAGVPCGPVQTVDVVARHPHTLHRGMVVEMGEYRGTASPIKLSRT
HHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCEEEEECCCCCCCCCEEECCC
PATYRSAPPSLGADTRDVLDALGIDAATQRRLFEAGVLKAGAPEA
CCHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]