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The map label for this gene is rarA [H]

Identifier: 91782394

GI number: 91782394

Start: 1135331

End: 1136644

Strand: Direct

Name: rarA [H]

Synonym: Bxe_A3436

Alternate gene names: 91782394

Gene position: 1135331-1136644 (Clockwise)

Preceding gene: 91782392

Following gene: 91782395

Centisome position: 23.19

GC content: 65.14

Gene sequence:

>1314_bases
ATGTTTGAAGAAACCCGTGCCAATGTTCCGCTCGCCGAACGCCTGCGGCCCCGCAATATCGACGAAGTGATCGGCCAGAA
GCATCTGCTTGGCCCGAACAAGCCGTTGCGGGTCGCGTTCGAATCCGGCGAAGCCCATTCGATGATCCTCTGGGGCCCGC
CCGGTGTCGGTAAAACCACGCTCGCCAGGCTCATGGCCGATGCGTTTCACGCCGAATTCATCGCACTGTCCGCGGTGCTC
TCGGGCGTGAAGGATATCCGCGAGGCCGTCGAGACCGCGCAGATTCATCGCGCGAACGGGCATCAGACGCTCGTGTTCGT
CGACGAAGTGCATCGTTTCAACAAGAGCCAGCAAGACGCGTTCTTGCCGCACGTGGAGTCGGGGCTGTTCGTGTTCGTCG
GCGCGACGACCGAGAATCCGTCGTTCGAAGTGAATAGCGCATTGCTCTCGCGTGCCGCCGTCTACGTGCTGAAAAGCCTG
ACCGACGAAGAGCAGCGCGAGCTGCTCGAGCGCGCGCAAAAGGAACTCGGCGGCCTCACGTTCACCGACGAAGCGCGTGA
CGCGCTGATCGGTTCCGCCGACGGCGACGGCCGCAAGCTGCTGAACAACCTGGAAATCGTCGCGCGGGCGGCGTCACAGC
AAAAGACCACCGAGATCGACGGCGCCTTACTCGGCAGCGCGCTCGCCGAAAACCTGCGGCGCTTCGACAAAGGCGGCGAC
GCATTCTACGACCAGATCAGCGCGCTGCATAAATCGGTGCGCGGCAGCAGCCCGGACGGCGCGCTGTACTGGTTCTGCCG
CATGCTCGACGGCGGCGCGGACCCGCGCTATCTGGCGCGCCGCATCGTGCGCATGGCGTGGGAAGATATCGGCCTCGCCG
ATCCGCGCGCCGCGCGCATCGCGCTCGACGCCGCCGAAACGTACGAGCGCCTCGGCACGCCTGAGGGCGAACTGGCGCTC
GCGCAGGCCATCATCTATCTGGCGGTCGCGCCGAAGTCCAATGCCGGGTACAACGCGTATAACGAGGCGCGCCGCTTCGT
CAGCAAAGACCAGTCGCGCGGCGTGCCGGTGCATCTGCGCAACGCGCCCACCAGGCTGATGAAGGAGCTCGGCTACGGTC
ACGAATACCGCTACGCGCACGACGAACCCGACGCGTACGCGGCCGGCGAGACCTATCTGCCCGAGAACATGCGCGATCCG
CATTGGTACGAACCGACGCCGCGTGGCCTGGAGGGGAAGATCGGCGACAAGATGGCGCGTCTGGCCGAACTGGACGCGCA
GTGGCGCAGCGAAAACAAGCCGAAGAAGGGGTGA

Upstream 100 bases:

>100_bases
GGACGTTGCCCGCACTTTTGCGTGCTGGCGTGGCTCACCGGCAGTACGCCGCCTTCACACGGACCGCGTCCGGAAAAGCC
GAGATTATCCCCAAAACGTC

Downstream 100 bases:

>100_bases
GCCGGTCCGGTGCGTTGCCGGGGGTCTTTTTTTCGTCGTTCGGTTTGTGGCGCGTTGCGCGGCTCGTTTTGCGCCTTGTT
TTTTTGCCCTGTTTCTCGCC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMADAFHAEFIALSAVL
SGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKSL
TDEEQRELLERAQKELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDGALLGSALAENLRRFDKGGD
AFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELAL
AQAIIYLAVAPKSNAGYNAYNEARRFVSKDQSRGVPVHLRNAPTRLMKELGYGHEYRYAHDEPDAYAAGETYLPENMRDP
HWYEPTPRGLEGKIGDKMARLAELDAQWRSENKPKKG

Sequences:

>Translated_437_residues
MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMADAFHAEFIALSAVL
SGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKSL
TDEEQRELLERAQKELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDGALLGSALAENLRRFDKGGD
AFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELAL
AQAIIYLAVAPKSNAGYNAYNEARRFVSKDQSRGVPVHLRNAPTRLMKELGYGHEYRYAHDEPDAYAAGETYLPENMRDP
HWYEPTPRGLEGKIGDKMARLAELDAQWRSENKPKKG
>Mature_437_residues
MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMADAFHAEFIALSAVL
SGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKSL
TDEEQRELLERAQKELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDGALLGSALAENLRRFDKGGD
AFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELAL
AQAIIYLAVAPKSNAGYNAYNEARRFVSKDQSRGVPVHLRNAPTRLMKELGYGHEYRYAHDEPDAYAAGETYLPENMRDP
HWYEPTPRGLEGKIGDKMARLAELDAQWRSENKPKKG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=41.8181818181818, Blast_Score=320, Evalue=2e-87,
Organism=Homo sapiens, GI18426904, Length=434, Percent_Identity=38.4792626728111, Blast_Score=265, Evalue=5e-71,
Organism=Escherichia coli, GI1787119, Length=435, Percent_Identity=54.9425287356322, Blast_Score=458, Evalue=1e-130,
Organism=Saccharomyces cerevisiae, GI6324111, Length=450, Percent_Identity=37.5555555555556, Blast_Score=283, Evalue=3e-77,
Organism=Drosophila melanogaster, GI17647857, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48419; Mature: 48419

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTT
CCCCCCCCCCHHHHCCCCCHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHHH
LARLMADAFHAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCHH
FLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLTDEEQRELLERAQKELGGLT
CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCE
FTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDGALLGSALAENLRRFDKGGD
ECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHE
ALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAGYNAYNEARRFVSKDQSRGVPVHLR
EHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEC
NAPTRLMKELGYGHEYRYAHDEPDAYAAGETYLPENMRDPHWYEPTPRGLEGKIGDKMAR
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LAELDAQWRSENKPKKG
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTT
CCCCCCCCCCHHHHCCCCCHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHHH
LARLMADAFHAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCHH
FLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLTDEEQRELLERAQKELGGLT
CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCE
FTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDGALLGSALAENLRRFDKGGD
ECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHE
ALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAGYNAYNEARRFVSKDQSRGVPVHLR
EHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEC
NAPTRLMKELGYGHEYRYAHDEPDAYAAGETYLPENMRDPHWYEPTPRGLEGKIGDKMAR
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LAELDAQWRSENKPKKG
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]