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The map label for this gene is cobD [H]

Identifier: 91782337

GI number: 91782337

Start: 1067508

End: 1068443

Strand: Reverse

Name: cobD [H]

Synonym: Bxe_A3494

Alternate gene names: 91782337

Gene position: 1068443-1067508 (Counterclockwise)

Preceding gene: 91782338

Following gene: 91782336

Centisome position: 21.82

GC content: 68.8

Gene sequence:

>936_bases
ATGCTGTCGCTCCCGCTACTCGTGACGCTGGCCACCGCGGGCGTCGTCGTCGACCGTTGGTTCGGCGAGCCGAGTCTCGC
TCATCCGCTGGTCGGGTTCGGCAAATGGGCGACGCGTCTCGAAACGCGCTACAACACCGGTCGCCGCTTGCGGCTCAAAG
GGCTGCTCGCGTGGTCGCTGGCCGTGCTGCCGCCTGTGCTGATCGCGTGGTGTCTGGTTGCCGTGCTGCCGTTTTTCGCG
GCCTGCGCGCTGCATGTCGCGTTGCTGTGGTTCGCGCTCGGCGCGCGCAGTCTGCACGATCACATTGCGCCGATCGCGCA
GGCACTGGCGCGGCGCGATCTTCCGCAAGCGCGCCTGCTGACCGCGCGGATCGTCTCGCGCGAAACCGCGAACGCGGACG
AAGCTGCGCTGTCGCGCGCCGCCGTCGAATCCGCGCTCGAAAACGGCAACGACGCGATCTTCGGCGCGCTGTTCTGGTTC
GCCATCGCGGGCGGTCCGGGTGCGCTCGGGTTTCGTCTCGCCAATACGCTCGATGCAATGTGGGGTTATCGCACGCCGCG
CTATCTGCGCTACGGCTGGGCCGCCGCGCGTATCGACGACGTGCTGAACTGGATTCCCGCCCGTCTGACCGCCGCCAGTT
ACGCACTCCTCGGCGACACGCGCACCGCGTGGCGCTGCTGGCGCGAACAGGCGCCGCGCTGGGACAGCCCGAACGCCGGA
CCGGTGATGGCAGCCGGCGCAGGCAGTCTGAACGTGCTGATCGGCGGCCCGGCGGTTTATCACGGCGCGCTCGAACATCG
CCCGATGCTCGGCTTCGGACGCGAGGCCAAGGCCGGCGACGTGAACGCCGCGTTGTTGCTGGTCGAGCGCACGGTCGTTC
TGTGGCTCGCCGTGCTGATCGTGCTGGCGCTGCTGAGCGTGCCGTTTCATGTGTGA

Upstream 100 bases:

>100_bases
AACTCGGGCGGCTCAACCAGCGCATCGCCGCGCTCAGCACCCAAGCCACGATGATGGTCGCCGGCCTGCCGCTCGCGCTG
AAAACCGCGAGCCGCGCGTG

Downstream 100 bases:

>100_bases
CGGGATGAAAGGCCGCGTGAGCGAAGCGAACCAGGTGAAAAACGAACCCGGCGGCGCCGTGCGTGCCGTCGCCCACGGCG
GCAATCTGCACGAAGCGGCC

Product: cobalamin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLSLPLLVTLATAGVVVDRWFGEPSLAHPLVGFGKWATRLETRYNTGRRLRLKGLLAWSLAVLPPVLIAWCLVAVLPFFA
ACALHVALLWFALGARSLHDHIAPIAQALARRDLPQARLLTARIVSRETANADEAALSRAAVESALENGNDAIFGALFWF
AIAGGPGALGFRLANTLDAMWGYRTPRYLRYGWAAARIDDVLNWIPARLTAASYALLGDTRTAWRCWREQAPRWDSPNAG
PVMAAGAGSLNVLIGGPAVYHGALEHRPMLGFGREAKAGDVNAALLLVERTVVLWLAVLIVLALLSVPFHV

Sequences:

>Translated_311_residues
MLSLPLLVTLATAGVVVDRWFGEPSLAHPLVGFGKWATRLETRYNTGRRLRLKGLLAWSLAVLPPVLIAWCLVAVLPFFA
ACALHVALLWFALGARSLHDHIAPIAQALARRDLPQARLLTARIVSRETANADEAALSRAAVESALENGNDAIFGALFWF
AIAGGPGALGFRLANTLDAMWGYRTPRYLRYGWAAARIDDVLNWIPARLTAASYALLGDTRTAWRCWREQAPRWDSPNAG
PVMAAGAGSLNVLIGGPAVYHGALEHRPMLGFGREAKAGDVNAALLLVERTVVLWLAVLIVLALLSVPFHV
>Mature_311_residues
MLSLPLLVTLATAGVVVDRWFGEPSLAHPLVGFGKWATRLETRYNTGRRLRLKGLLAWSLAVLPPVLIAWCLVAVLPFFA
ACALHVALLWFALGARSLHDHIAPIAQALARRDLPQARLLTARIVSRETANADEAALSRAAVESALENGNDAIFGALFWF
AIAGGPGALGFRLANTLDAMWGYRTPRYLRYGWAAARIDDVLNWIPARLTAASYALLGDTRTAWRCWREQAPRWDSPNAG
PVMAAGAGSLNVLIGGPAVYHGALEHRPMLGFGREAKAGDVNAALLLVERTVVLWLAVLIVLALLSVPFHV

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 33673; Mature: 33673

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLPLLVTLATAGVVVDRWFGEPSLAHPLVGFGKWATRLETRYNTGRRLRLKGLLAWSL
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
AVLPPVLIAWCLVAVLPFFAACALHVALLWFALGARSLHDHIAPIAQALARRDLPQARLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
TARIVSRETANADEAALSRAAVESALENGNDAIFGALFWFAIAGGPGALGFRLANTLDAM
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
WGYRTPRYLRYGWAAARIDDVLNWIPARLTAASYALLGDTRTAWRCWREQAPRWDSPNAG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
PVMAAGAGSLNVLIGGPAVYHGALEHRPMLGFGREAKAGDVNAALLLVERTVVLWLAVLI
CEEEECCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VLALLSVPFHV
HHHHHHCCCCC
>Mature Secondary Structure
MLSLPLLVTLATAGVVVDRWFGEPSLAHPLVGFGKWATRLETRYNTGRRLRLKGLLAWSL
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
AVLPPVLIAWCLVAVLPFFAACALHVALLWFALGARSLHDHIAPIAQALARRDLPQARLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
TARIVSRETANADEAALSRAAVESALENGNDAIFGALFWFAIAGGPGALGFRLANTLDAM
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
WGYRTPRYLRYGWAAARIDDVLNWIPARLTAASYALLGDTRTAWRCWREQAPRWDSPNAG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
PVMAAGAGSLNVLIGGPAVYHGALEHRPMLGFGREAKAGDVNAALLLVERTVVLWLAVLI
CEEEECCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VLALLSVPFHV
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]