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The map label for this gene is rbsB [H]

Identifier: 91782162

GI number: 91782162

Start: 877235

End: 878197

Strand: Direct

Name: rbsB [H]

Synonym: Bxe_A3673

Alternate gene names: 91782162

Gene position: 877235-878197 (Clockwise)

Preceding gene: 91782161

Following gene: 91782163

Centisome position: 17.92

GC content: 61.47

Gene sequence:

>963_bases
ATGAAGCAGGTCCTTCGAGCGGTCGGCGCCGGCATGCTGGCGTTGGGAATACTGGGTACGGCGAATGTCGCGCGCGCCGA
TGAAAAAGTCACGCTGGGCGTCGCGATTCCGACAGCCGACCACGGCTTTACGGGCGGTATCGTCTGGTGGGCGAATAAAG
CCAAAGCCGATCTGGAGAAAGCGCATCCCGATCTGAAGGTGATCGTGAAGACCGCGGCCGGCGCGCCCGAACAGGCGAAC
CAGTTGCAGGATCTCGTGACCGTCAACAAGATCAACGCGCTCGTGATCTTCCCGTTCGAATCGGCCTCGCTCACGCAACC
GGTCGCGCAGGTGAAGAAGAAAGGCGTGTACGTGACGGTGGTGGATCGAGGCCTGACCGACACCAGCGCGCAGGACGCCT
ACGTGGCGGGCGACAACACCGCGTTCGGCAAGATCCCCGCCGAGTTTCTGGCGAAGGAGCTGGGCGGCAAGGGCAACATC
GTCGCGCTGCGCGGCATTCCGACCACGCTCGACAATGAACGCTGGACCGCGTTCACGAACGTGATCAAGAACTACCCGGA
GATGAAGATTCTCGACGCCAAGTATGCGAACTGGAATCGCGACGACGCGTTCAAGGTCATGCAGGATTATCTGACGCGCT
TCAAGCATATCGACGCCGTCTGGGCCGCGGACGACGACATGGCCGTGGGCGTGATCAAGGCGATCGAGCAGGCGAGGCGC
ACCGACATCAAGATCGTATTCGGCGGCGCGGGATCGAAGGGCATGGTGAAGAACGTGATGGACGGCGCGCCGATGATCAA
GGCGGACGTATCGTATTCGCCCAAGTTCATCTACGACGCCATCAAGCTCACCGCCGAGGCGCGCCTGAAGGGCGAGAAGC
TGCCGCCCACGACGATCATTCCGTCGGTGCTGATCACGAAGGAAAACGCGCAGCAGTTCTATTTCCCGGACTCGCCGTTC
TGA

Upstream 100 bases:

>100_bases
AGCGGTAGTGCTTCGGTAGTGCTTCAGATTGCGCTTCAAACTGCAATAACGGTGAATTGAGATCGGGGCGCACGAACGCC
TCACACAAGGAGACATAACC

Downstream 100 bases:

>100_bases
TCCCAGCATCCGGGGCGCGCCTGCCTGATTCCGGTCAGTGGGCCGCGCGGCGGGCGCGCCCCCGTTCGAGGAACCGTACG
ATGAAAACCATCCAGGGCCC

Product: ABC sugar transporter, periplasmic ligand binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKQVLRAVGAGMLALGILGTANVARADEKVTLGVAIPTADHGFTGGIVWWANKAKADLEKAHPDLKVIVKTAAGAPEQAN
QLQDLVTVNKINALVIFPFESASLTQPVAQVKKKGVYVTVVDRGLTDTSAQDAYVAGDNTAFGKIPAEFLAKELGGKGNI
VALRGIPTTLDNERWTAFTNVIKNYPEMKILDAKYANWNRDDAFKVMQDYLTRFKHIDAVWAADDDMAVGVIKAIEQARR
TDIKIVFGGAGSKGMVKNVMDGAPMIKADVSYSPKFIYDAIKLTAEARLKGEKLPPTTIIPSVLITKENAQQFYFPDSPF

Sequences:

>Translated_320_residues
MKQVLRAVGAGMLALGILGTANVARADEKVTLGVAIPTADHGFTGGIVWWANKAKADLEKAHPDLKVIVKTAAGAPEQAN
QLQDLVTVNKINALVIFPFESASLTQPVAQVKKKGVYVTVVDRGLTDTSAQDAYVAGDNTAFGKIPAEFLAKELGGKGNI
VALRGIPTTLDNERWTAFTNVIKNYPEMKILDAKYANWNRDDAFKVMQDYLTRFKHIDAVWAADDDMAVGVIKAIEQARR
TDIKIVFGGAGSKGMVKNVMDGAPMIKADVSYSPKFIYDAIKLTAEARLKGEKLPPTTIIPSVLITKENAQQFYFPDSPF
>Mature_320_residues
MKQVLRAVGAGMLALGILGTANVARADEKVTLGVAIPTADHGFTGGIVWWANKAKADLEKAHPDLKVIVKTAAGAPEQAN
QLQDLVTVNKINALVIFPFESASLTQPVAQVKKKGVYVTVVDRGLTDTSAQDAYVAGDNTAFGKIPAEFLAKELGGKGNI
VALRGIPTTLDNERWTAFTNVIKNYPEMKILDAKYANWNRDDAFKVMQDYLTRFKHIDAVWAADDDMAVGVIKAIEQARR
TDIKIVFGGAGSKGMVKNVMDGAPMIKADVSYSPKFIYDAIKLTAEARLKGEKLPPTTIIPSVLITKENAQQFYFPDSPF

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=286, Percent_Identity=28.6713286713287, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790526, Length=247, Percent_Identity=28.7449392712551, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790674, Length=281, Percent_Identity=28.1138790035587, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34667; Mature: 34667

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVLRAVGAGMLALGILGTANVARADEKVTLGVAIPTADHGFTGGIVWWANKAKADLEK
CHHHHHHHCCHHHHHHHHCCCCHHCCCCEEEEEEEECCCCCCCCCCEEEECCCHHHHHHH
AHPDLKVIVKTAAGAPEQANQLQDLVTVNKINALVIFPFESASLTQPVAQVKKKGVYVTV
HCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEE
VDRGLTDTSAQDAYVAGDNTAFGKIPAEFLAKELGGKGNIVALRGIPTTLDNERWTAFTN
EECCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH
VIKNYPEMKILDAKYANWNRDDAFKVMQDYLTRFKHIDAVWAADDDMAVGVIKAIEQARR
HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHC
TDIKIVFGGAGSKGMVKNVMDGAPMIKADVSYSPKFIYDAIKLTAEARLKGEKLPPTTII
CCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHC
PSVLITKENAQQFYFPDSPF
CCEEEEECCCCEECCCCCCC
>Mature Secondary Structure
MKQVLRAVGAGMLALGILGTANVARADEKVTLGVAIPTADHGFTGGIVWWANKAKADLEK
CHHHHHHHCCHHHHHHHHCCCCHHCCCCEEEEEEEECCCCCCCCCCEEEECCCHHHHHHH
AHPDLKVIVKTAAGAPEQANQLQDLVTVNKINALVIFPFESASLTQPVAQVKKKGVYVTV
HCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEE
VDRGLTDTSAQDAYVAGDNTAFGKIPAEFLAKELGGKGNIVALRGIPTTLDNERWTAFTN
EECCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH
VIKNYPEMKILDAKYANWNRDDAFKVMQDYLTRFKHIDAVWAADDDMAVGVIKAIEQARR
HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHC
TDIKIVFGGAGSKGMVKNVMDGAPMIKADVSYSPKFIYDAIKLTAEARLKGEKLPPTTII
CCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHC
PSVLITKENAQQFYFPDSPF
CCEEEEECCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]