| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is livM [H]
Identifier: 91782150
GI number: 91782150
Start: 863198
End: 864379
Strand: Reverse
Name: livM [H]
Synonym: Bxe_A3685
Alternate gene names: 91782150
Gene position: 864379-863198 (Counterclockwise)
Preceding gene: 91782151
Following gene: 91782149
Centisome position: 17.66
GC content: 64.89
Gene sequence:
>1182_bases ATGACGTCTGCAACTTCATCGGCTCACGTCGGCGCAAGCGGCGGCGCCCTGCCCGGCCGCGACGCGCAAGCGGGTTTCGC GCTCGGCCTGCCGCCGCGTCCCGCGCTGCTGTCGCGGCGCGCGTGGCTCGCGCTGATCGCGTTGATCATCGTCTTCGGGC TGGGCGTGCCGTTCGCCACGCTGGTGGTGCCGGAGACGAGCGCGCTGCATCTGTCCGCCTACGCGATGACGATCACCGGC AAGTTCATGTGCTACGCGATCGCGGCGCTGGCGCTCGACCTCGTGTGGGGCTACTGCGGCATTTTGAGCCTGGGGCACGC GCTGTTCTTCGCGCTCGGCGGCTACGCGATCGGCATGTATCTGATGCGCGCGATCGGCCACGAAGGCAAATATGGCAGCG ACCTGCCCGACTTCATGGTGTTCCTCGACTGGCATCAACTGCCGTGGTACTGGCAAGGCACGCAGCATCTCGGCTATGCG CTGCTGCTGGTGGTGCTGGTGCCGGCGGTGGTCGCGTGGGTGTTCGGCTTCTTCACGTTCCGCTCGCGGGTGAAAGGCGT GTATCTGTCGATCATCACGCAGGCCATGACCTTCGCCGCGATGCTGCTGTTCTATCGCAACGAGACGGGCTTCGGCGGCA ATAACGGCTTTACCGACTTCAAGCGCATCGGCGGCTTTCCGATCACCCATCCGGGCACGCGCACCGCGTTGCTGCTGATC ACGTTCGCGGTGCTGATCCTCGCGTTCCTCGGCGCGCGGGCCATCGTCACCTCGAAGCTCGGCCGCGTAGTGACCGCGGT GCGCGACGGCGAAACGCGCCTGATGTTCCTCGGCTACAGCCCGCTCGCCTACAAGCTGTTCGTGTGGACGGTGTCCGCCG TGTTGTGCGGGATTGCCGGCGCGCTGTACGTGCCGCAGGTCGGCATCATCAACCCGGGTGAGATGTCACCGGGCAATTCG ATCGAAATGGCGATCTGGGTCGCCGTGGGCGGACGCGGCACGCTGATCGGCCCGATCATCGGCGCCTTCGCGGTGAATGG CGCGAAGAGCTTTTTTACGGCGAACTTCCCTGAATACTGGCTGTTCTTTCTCGGTCTGATTTTCGTGCTGGTCCCGCTGT TCCTGCCGAACGGCATCATGGGGCTGATCGAACTCGTGACGCGCAAGAGGAACCGCTCATGA
Upstream 100 bases:
>100_bases GTGCTCGCCAAGATCGCGGTGCTCGTGCTGATCGTGTTGTTCATCCAGAAGCGTCCGCAGGGCATGTTCGCCCTCAAGGG CCGTAGCGCGGAGGCATGAG
Downstream 100 bases:
>100_bases ACGAAAACCCGATGGTTCCTGATTTAGCCCTGCCGGAAGATCCCGCCGAATCGTCGTTGAGCGGCGTGGCGAGCATGGGC CGCGCGGTCGTGCCCGGCGA
Product: branched chain amino acid ABC transporter inner membrane protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein M [H]
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MTSATSSAHVGASGGALPGRDAQAGFALGLPPRPALLSRRAWLALIALIIVFGLGVPFATLVVPETSALHLSAYAMTITG KFMCYAIAALALDLVWGYCGILSLGHALFFALGGYAIGMYLMRAIGHEGKYGSDLPDFMVFLDWHQLPWYWQGTQHLGYA LLLVVLVPAVVAWVFGFFTFRSRVKGVYLSIITQAMTFAAMLLFYRNETGFGGNNGFTDFKRIGGFPITHPGTRTALLLI TFAVLILAFLGARAIVTSKLGRVVTAVRDGETRLMFLGYSPLAYKLFVWTVSAVLCGIAGALYVPQVGIINPGEMSPGNS IEMAIWVAVGGRGTLIGPIIGAFAVNGAKSFFTANFPEYWLFFLGLIFVLVPLFLPNGIMGLIELVTRKRNRS
Sequences:
>Translated_393_residues MTSATSSAHVGASGGALPGRDAQAGFALGLPPRPALLSRRAWLALIALIIVFGLGVPFATLVVPETSALHLSAYAMTITG KFMCYAIAALALDLVWGYCGILSLGHALFFALGGYAIGMYLMRAIGHEGKYGSDLPDFMVFLDWHQLPWYWQGTQHLGYA LLLVVLVPAVVAWVFGFFTFRSRVKGVYLSIITQAMTFAAMLLFYRNETGFGGNNGFTDFKRIGGFPITHPGTRTALLLI TFAVLILAFLGARAIVTSKLGRVVTAVRDGETRLMFLGYSPLAYKLFVWTVSAVLCGIAGALYVPQVGIINPGEMSPGNS IEMAIWVAVGGRGTLIGPIIGAFAVNGAKSFFTANFPEYWLFFLGLIFVLVPLFLPNGIMGLIELVTRKRNRS >Mature_392_residues TSATSSAHVGASGGALPGRDAQAGFALGLPPRPALLSRRAWLALIALIIVFGLGVPFATLVVPETSALHLSAYAMTITGK FMCYAIAALALDLVWGYCGILSLGHALFFALGGYAIGMYLMRAIGHEGKYGSDLPDFMVFLDWHQLPWYWQGTQHLGYAL LLVVLVPAVVAWVFGFFTFRSRVKGVYLSIITQAMTFAAMLLFYRNETGFGGNNGFTDFKRIGGFPITHPGTRTALLLIT FAVLILAFLGARAIVTSKLGRVVTAVRDGETRLMFLGYSPLAYKLFVWTVSAVLCGIAGALYVPQVGIINPGEMSPGNSI EMAIWVAVGGRGTLIGPIIGAFAVNGAKSFFTANFPEYWLFFLGLIFVLVPLFLPNGIMGLIELVTRKRNRS
Specific function: Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=331, Percent_Identity=26.2839879154079, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 42340; Mature: 42209
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSATSSAHVGASGGALPGRDAQAGFALGLPPRPALLSRRAWLALIALIIVFGLGVPFAT CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHE LVVPETSALHLSAYAMTITGKFMCYAIAALALDLVWGYCGILSLGHALFFALGGYAIGMY EEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LMRAIGHEGKYGSDLPDFMVFLDWHQLPWYWQGTQHLGYALLLVVLVPAVVAWVFGFFTF HHHHHCCCCCCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSRVKGVYLSIITQAMTFAAMLLFYRNETGFGGNNGFTDFKRIGGFPITHPGTRTALLLI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHH TFAVLILAFLGARAIVTSKLGRVVTAVRDGETRLMFLGYSPLAYKLFVWTVSAVLCGIAG HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH ALYVPQVGIINPGEMSPGNSIEMAIWVAVGGRGTLIGPIIGAFAVNGAKSFFTANFPEYW HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHCCCCHHHH LFFLGLIFVLVPLFLPNGIMGLIELVTRKRNRS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC >Mature Secondary Structure TSATSSAHVGASGGALPGRDAQAGFALGLPPRPALLSRRAWLALIALIIVFGLGVPFAT CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHE LVVPETSALHLSAYAMTITGKFMCYAIAALALDLVWGYCGILSLGHALFFALGGYAIGMY EEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LMRAIGHEGKYGSDLPDFMVFLDWHQLPWYWQGTQHLGYALLLVVLVPAVVAWVFGFFTF HHHHHCCCCCCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSRVKGVYLSIITQAMTFAAMLLFYRNETGFGGNNGFTDFKRIGGFPITHPGTRTALLLI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHH TFAVLILAFLGARAIVTSKLGRVVTAVRDGETRLMFLGYSPLAYKLFVWTVSAVLCGIAG HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH ALYVPQVGIINPGEMSPGNSIEMAIWVAVGGRGTLIGPIIGAFAVNGAKSFFTANFPEYW HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHCCCCHHHH LFFLGLIFVLVPLFLPNGIMGLIELVTRKRNRS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]