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The map label for this gene is dedA [H]

Identifier: 91781912

GI number: 91781912

Start: 596249

End: 596920

Strand: Direct

Name: dedA [H]

Synonym: Bxe_A3933

Alternate gene names: 91781912

Gene position: 596249-596920 (Clockwise)

Preceding gene: 91781909

Following gene: 91781918

Centisome position: 12.18

GC content: 57.74

Gene sequence:

>672_bases
TTGGACACGTTGCTACATTTCGTCAACCTTGTCTTGCACATCGACAAGTTCCTCGGAGACTTTATTCATGTGTACGGCGC
GTGGGTCTACGCGGTGCTGTTCCTGATCGTGTTCTGCGAAACCGGGCTGGTGGTGCTGCCGTTTCTGCCGGGCGATTCGC
TGCTGTTCATCGGCGGCGCGTTTTGCGCGACCGGCGAAATGAATATTGGTTTGCTGATCGTGTTGCTGCTCGTGGCGGCC
ATCAGCGGCAATACCGTCAATTACATGATCGGGCGAGCCATCGGACCGCGGGTGTTCAATTCGCACATTCCTTTTCTCGA
ACGCTTTCTCGATCGCAGCGCGCTGCAGAAGACCCACAACTTCTATGAGAAGCATGGGGGCAAAACCATCGTGCTGGCGC
GTTTCATCCCGGTGGTGCGGACCTTTGCGCCGTTCGTTGCGGGTGCATCCGAAATGACCGTGAGCCGGTTCCAGTTGTTC
AACTTTGTCGGCGCGCTGTTCTGGGTGCTGCTGCTGACGTTGCTCGGTTATTTCTTCGGCAACATTCCGTTTATCCGCCA
GTATCTGAACGTGATCGTGCTGGTGGGTATCGGCGCAGCGGTGGTGCCGGTCGTGCTCGGCGCGTTGTGGAAGATGATGC
GCAAGAACGCCTCGAGCGCGGGCAGCCGCTGA

Upstream 100 bases:

>100_bases
TCAATTTCCGGCGGCGAGTGTGCGCCTGCCGCCCTCGCTAACGGGTCCGCTGGTACGGCCGTTTCCGCCACCGTCACATT
CGCTTAATAAAGGATTCTCT

Downstream 100 bases:

>100_bases
CGTTTCACTGCAATACCCGGCCACATGAGAAAACGGCGTCGCGAATTTCGCGACGCCGTTTTCGTTCTGCACCTCTGATT
GTGGATTTAACAATTGACGA

Product: DedA family transmembrane protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDTLLHFVNLVLHIDKFLGDFIHVYGAWVYAVLFLIVFCETGLVVLPFLPGDSLLFIGGAFCATGEMNIGLLIVLLLVAA
ISGNTVNYMIGRAIGPRVFNSHIPFLERFLDRSALQKTHNFYEKHGGKTIVLARFIPVVRTFAPFVAGASEMTVSRFQLF
NFVGALFWVLLLTLLGYFFGNIPFIRQYLNVIVLVGIGAAVVPVVLGALWKMMRKNASSAGSR

Sequences:

>Translated_223_residues
MDTLLHFVNLVLHIDKFLGDFIHVYGAWVYAVLFLIVFCETGLVVLPFLPGDSLLFIGGAFCATGEMNIGLLIVLLLVAA
ISGNTVNYMIGRAIGPRVFNSHIPFLERFLDRSALQKTHNFYEKHGGKTIVLARFIPVVRTFAPFVAGASEMTVSRFQLF
NFVGALFWVLLLTLLGYFFGNIPFIRQYLNVIVLVGIGAAVVPVVLGALWKMMRKNASSAGSR
>Mature_223_residues
MDTLLHFVNLVLHIDKFLGDFIHVYGAWVYAVLFLIVFCETGLVVLPFLPGDSLLFIGGAFCATGEMNIGLLIVLLLVAA
ISGNTVNYMIGRAIGPRVFNSHIPFLERFLDRSALQKTHNFYEKHGGKTIVLARFIPVVRTFAPFVAGASEMTVSRFQLF
NFVGALFWVLLLTLLGYFFGNIPFIRQYLNVIVLVGIGAAVVPVVLGALWKMMRKNASSAGSR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=208, Percent_Identity=51.4423076923077, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1789481, Length=169, Percent_Identity=40.2366863905325, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789384, Length=165, Percent_Identity=34.5454545454545, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24645; Mature: 24645

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLLHFVNLVLHIDKFLGDFIHVYGAWVYAVLFLIVFCETGLVVLPFLPGDSLLFIGGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCH
FCATGEMNIGLLIVLLLVAAISGNTVNYMIGRAIGPRVFNSHIPFLERFLDRSALQKTHN
HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHH
FYEKHGGKTIVLARFIPVVRTFAPFVAGASEMTVSRFQLFNFVGALFWVLLLTLLGYFFG
HHHHCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPFIRQYLNVIVLVGIGAAVVPVVLGALWKMMRKNASSAGSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDTLLHFVNLVLHIDKFLGDFIHVYGAWVYAVLFLIVFCETGLVVLPFLPGDSLLFIGGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCH
FCATGEMNIGLLIVLLLVAAISGNTVNYMIGRAIGPRVFNSHIPFLERFLDRSALQKTHN
HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHH
FYEKHGGKTIVLARFIPVVRTFAPFVAGASEMTVSRFQLFNFVGALFWVLLLTLLGYFFG
HHHHCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPFIRQYLNVIVLVGIGAAVVPVVLGALWKMMRKNASSAGSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]