| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ydjE [H]
Identifier: 91781758
GI number: 91781758
Start: 413450
End: 414856
Strand: Direct
Name: ydjE [H]
Synonym: Bxe_A4087
Alternate gene names: 91781758
Gene position: 413450-414856 (Clockwise)
Preceding gene: 91781757
Following gene: 91781759
Centisome position: 8.44
GC content: 62.9
Gene sequence:
>1407_bases ATGCACGCCAAGGAGACAAAGGTGGCTATCGGTATCGTCAACTCGGGCGCGCGACTCGATCGCCTGCCCATCGCGTCCTT TCACTGGAAGATTCTCGGGCTCATCAGCGCGGGCGCCTTTCTCGACGCCTTCGACATCTATCTCGCGGCCGGCGCGCTCG GCGCGATGGTGAAAGCGGGCTTTTCGGATCTGAAGCTGAACGCGCTGTTCATCTCGGTGACGTTTCTCGGCATGCTGATC GGCGCGGGCTTTGCCGGTTATCTAGGCGACCGCTTCGGCCGCCGCTCGTCGTACCAGACCAATCTGCTGATCTTCGGCAT TGCGTCGATCGCCGCGTGCTTCGTGCCGAACATGATGTGGCTGATCGTGCTGCGGCTGATCATGGGGGTCGGCCTCGGCG CCGAACTGGTGGTCGCGGCGGGCACCTTGTGCGAATTCATCCCGCCCGCGTCGCGCGGACGCTGGACCGCCTTGCTCGCG CTCATCATCAATTCCGGTTTGCTGGTGTCGACTGCCGTGGGTTACGTGGTGATTCCGCATCTGGGCTGGCGCTATATGTT CGCGATTGCCGGCGTCGGCGCGATTATCGTGTGGGTGCTGCGGCACCGCATGCCGGAATCGCCGCGCTGGCTCGAATCGG TCGGACGCAGCGACGAAGCCGAGGCCACCGTTTCCGCCATCGAGCACGAGGTACAGCGACAGAAAGGTTCGTTGCCGCCG GTCGAGCGCATCGAAAATCTGGAAGTGCCGAAAGCGCCATTCTCGGCACTGTTCTCGCACGCCATGCTCGGCCGCACGCT GGTTGCCATTCTCACGGCAGTTGCCGTGAATATTTCGGTGTACGGCTTTGTTGCCTGGCTGCCCACCTTCTTCGTGAAGG AAGGTCTCACCATCGTGCAATCGCTCGGCTTTACGACGCTGATGGCGTTCGGCGCACCGGGCGGCGCGTTGATCGGCTTT CTCTGCGCGGATCGTGTGGGCCGTGCGCGTGGCCTGGTGATCTTCGCGATCGCCACGATCGTGGTCGGCTTCATCTATCC GAACATGCACGCGGGTTGGGCGATCAGCAGCGTCGGTTTCGTGCTGGTCACCTGCATCTATACGGTCACCACGCTCGGCC TGTTCGCCTACATTCCCGAACTCTTTCCGACCGAACTGCGTCTGCGCGGCACGGGCACGGCAGGCGTATGCGGCCGCGCT GCCTCGATGACCACGCCGTATCTCGCGGTGGTGCTCTACAACTCGTTCGGTGTATCCGGTGTGCTGGCGATGGTGAGCGG TGTTCTCGCGCTGCTGGTGCTCGGCATTCTGCTGCTGCGTGTGGAAACCAATCAGCACGCGCTCGAGCGGATCTCGCCGA GCCTCGACACCGATTCCGATCCGATGCCCGCTACCCAGCAAGGTTAA
Upstream 100 bases:
>100_bases GCAGCACATAGCGCGCACCTGCCGGCAAGAGCAGTCCGCGCGCGGATTCCGGCGGCGCCCGAACAGGCGCCGCGATGCGG CAAGCGCCTACGCGCACCGC
Downstream 100 bases:
>100_bases ATCACCATGACTTCACTCGACTCCTCCGTCACGCTCTCTGGTCAGTACGCGCGCTTCGGCGTGGGCCTGCAATTGCGCGA CGTTCCGCATGCGGTGCAGA
Product: major facilitator superfamily metabolite/H(+) symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MHAKETKVAIGIVNSGARLDRLPIASFHWKILGLISAGAFLDAFDIYLAAGALGAMVKAGFSDLKLNALFISVTFLGMLI GAGFAGYLGDRFGRRSSYQTNLLIFGIASIAACFVPNMMWLIVLRLIMGVGLGAELVVAAGTLCEFIPPASRGRWTALLA LIINSGLLVSTAVGYVVIPHLGWRYMFAIAGVGAIIVWVLRHRMPESPRWLESVGRSDEAEATVSAIEHEVQRQKGSLPP VERIENLEVPKAPFSALFSHAMLGRTLVAILTAVAVNISVYGFVAWLPTFFVKEGLTIVQSLGFTTLMAFGAPGGALIGF LCADRVGRARGLVIFAIATIVVGFIYPNMHAGWAISSVGFVLVTCIYTVTTLGLFAYIPELFPTELRLRGTGTAGVCGRA ASMTTPYLAVVLYNSFGVSGVLAMVSGVLALLVLGILLLRVETNQHALERISPSLDTDSDPMPATQQG
Sequences:
>Translated_468_residues MHAKETKVAIGIVNSGARLDRLPIASFHWKILGLISAGAFLDAFDIYLAAGALGAMVKAGFSDLKLNALFISVTFLGMLI GAGFAGYLGDRFGRRSSYQTNLLIFGIASIAACFVPNMMWLIVLRLIMGVGLGAELVVAAGTLCEFIPPASRGRWTALLA LIINSGLLVSTAVGYVVIPHLGWRYMFAIAGVGAIIVWVLRHRMPESPRWLESVGRSDEAEATVSAIEHEVQRQKGSLPP VERIENLEVPKAPFSALFSHAMLGRTLVAILTAVAVNISVYGFVAWLPTFFVKEGLTIVQSLGFTTLMAFGAPGGALIGF LCADRVGRARGLVIFAIATIVVGFIYPNMHAGWAISSVGFVLVTCIYTVTTLGLFAYIPELFPTELRLRGTGTAGVCGRA ASMTTPYLAVVLYNSFGVSGVLAMVSGVLALLVLGILLLRVETNQHALERISPSLDTDSDPMPATQQG >Mature_468_residues MHAKETKVAIGIVNSGARLDRLPIASFHWKILGLISAGAFLDAFDIYLAAGALGAMVKAGFSDLKLNALFISVTFLGMLI GAGFAGYLGDRFGRRSSYQTNLLIFGIASIAACFVPNMMWLIVLRLIMGVGLGAELVVAAGTLCEFIPPASRGRWTALLA LIINSGLLVSTAVGYVVIPHLGWRYMFAIAGVGAIIVWVLRHRMPESPRWLESVGRSDEAEATVSAIEHEVQRQKGSLPP VERIENLEVPKAPFSALFSHAMLGRTLVAILTAVAVNISVYGFVAWLPTFFVKEGLTIVQSLGFTTLMAFGAPGGALIGF LCADRVGRARGLVIFAIATIVVGFIYPNMHAGWAISSVGFVLVTCIYTVTTLGLFAYIPELFPTELRLRGTGTAGVCGRA ASMTTPYLAVVLYNSFGVSGVLAMVSGVLALLVLGILLLRVETNQHALERISPSLDTDSDPMPATQQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI24308167, Length=459, Percent_Identity=25.0544662309368, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI7662270, Length=362, Percent_Identity=22.6519337016575, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI4506999, Length=394, Percent_Identity=26.1421319796954, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI262399383, Length=192, Percent_Identity=27.6041666666667, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI166197673, Length=355, Percent_Identity=24.7887323943662, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI73695465, Length=197, Percent_Identity=27.4111675126904, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI23510410, Length=293, Percent_Identity=26.2798634812287, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI213021148, Length=220, Percent_Identity=25.9090909090909, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI302148518, Length=359, Percent_Identity=25.0696378830084, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI166064021, Length=382, Percent_Identity=25.3926701570681, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI216548223, Length=183, Percent_Identity=26.2295081967213, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI24497476, Length=370, Percent_Identity=25.4054054054054, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI203098995, Length=193, Percent_Identity=28.4974093264249, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI20070188, Length=370, Percent_Identity=25.4054054054054, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI31542327, Length=436, Percent_Identity=25.6880733944954, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI4507005, Length=387, Percent_Identity=23.5142118863049, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI1788068, Length=443, Percent_Identity=39.9548532731377, Blast_Score=300, Evalue=1e-82, Organism=Escherichia coli, GI1788074, Length=447, Percent_Identity=34.0044742729307, Blast_Score=238, Evalue=9e-64, Organism=Escherichia coli, GI1786229, Length=426, Percent_Identity=26.2910798122066, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1789207, Length=436, Percent_Identity=25.4587155963303, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI87082159, Length=406, Percent_Identity=28.0788177339901, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI87082404, Length=410, Percent_Identity=24.1463414634146, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI87082231, Length=252, Percent_Identity=27.3809523809524, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1790463, Length=257, Percent_Identity=25.2918287937743, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI87081723, Length=390, Percent_Identity=26.4102564102564, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1790550, Length=369, Percent_Identity=23.8482384823848, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789312, Length=406, Percent_Identity=23.3990147783251, Blast_Score=65, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17565978, Length=358, Percent_Identity=24.3016759776536, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI32564663, Length=372, Percent_Identity=25, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565976, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6321068, Length=442, Percent_Identity=21.2669683257919, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6320766, Length=468, Percent_Identity=23.9316239316239, Blast_Score=74, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6324400, Length=468, Percent_Identity=23.7179487179487, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6320595, Length=212, Percent_Identity=28.7735849056604, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324469, Length=422, Percent_Identity=23.696682464455, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322618, Length=402, Percent_Identity=24.6268656716418, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6319956, Length=402, Percent_Identity=24.6268656716418, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320705, Length=279, Percent_Identity=25.8064516129032, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI19922874, Length=384, Percent_Identity=25.2604166666667, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI24640198, Length=453, Percent_Identity=23.841059602649, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI24640196, Length=453, Percent_Identity=23.841059602649, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI24640200, Length=453, Percent_Identity=23.841059602649, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI19922616, Length=410, Percent_Identity=22.6829268292683, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 49821; Mature: 49821
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAKETKVAIGIVNSGARLDRLPIASFHWKILGLISAGAFLDAFDIYLAAGALGAMVKAG CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FSDLKLNALFISVTFLGMLIGAGFAGYLGDRFGRRSSYQTNLLIFGIASIAACFVPNMMW CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LIVLRLIMGVGLGAELVVAAGTLCEFIPPASRGRWTALLALIINSGLLVSTAVGYVVIPH HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHEECC LGWRYMFAIAGVGAIIVWVLRHRMPESPRWLESVGRSDEAEATVSAIEHEVQRQKGSLPP CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC VERIENLEVPKAPFSALFSHAMLGRTLVAILTAVAVNISVYGFVAWLPTFFVKEGLTIVQ HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLGFTTLMAFGAPGGALIGFLCADRVGRARGLVIFAIATIVVGFIYPNMHAGWAISSVGF HHHHHHHHHHCCCHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VLVTCIYTVTTLGLFAYIPELFPTELRLRGTGTAGVCGRAASMTTPYLAVVLYNSFGVSG HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHHCCHHH VLAMVSGVLALLVLGILLLRVETNQHALERISPSLDTDSDPMPATQQG HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHAKETKVAIGIVNSGARLDRLPIASFHWKILGLISAGAFLDAFDIYLAAGALGAMVKAG CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FSDLKLNALFISVTFLGMLIGAGFAGYLGDRFGRRSSYQTNLLIFGIASIAACFVPNMMW CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LIVLRLIMGVGLGAELVVAAGTLCEFIPPASRGRWTALLALIINSGLLVSTAVGYVVIPH HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHEECC LGWRYMFAIAGVGAIIVWVLRHRMPESPRWLESVGRSDEAEATVSAIEHEVQRQKGSLPP CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC VERIENLEVPKAPFSALFSHAMLGRTLVAILTAVAVNISVYGFVAWLPTFFVKEGLTIVQ HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLGFTTLMAFGAPGGALIGFLCADRVGRARGLVIFAIATIVVGFIYPNMHAGWAISSVGF HHHHHHHHHHCCCHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VLVTCIYTVTTLGLFAYIPELFPTELRLRGTGTAGVCGRAASMTTPYLAVVLYNSFGVSG HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHHCCHHH VLAMVSGVLALLVLGILLLRVETNQHALERISPSLDTDSDPMPATQQG HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 2670682; 7984428 [H]