| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yybO [H]
Identifier: 91781746
GI number: 91781746
Start: 399879
End: 401180
Strand: Direct
Name: yybO [H]
Synonym: Bxe_A4099
Alternate gene names: 91781746
Gene position: 399879-401180 (Clockwise)
Preceding gene: 91781745
Following gene: 91781747
Centisome position: 8.17
GC content: 64.82
Gene sequence:
>1302_bases ATGAAATCGAAAGCAGGCATGTTCACCGGTACGACAGGCAGGGTTTTTCTGCTGATCTGCGCGATGTATTTCATCGAATA CGTCGACCGCGTGAACCTTTCCATTGCGGCGCCGCTGCTGAAGTCGGAGATGCATCTGTCGAATACGCAGCTTGGTATCG CGCTCTCGGCGTTCGGCTATTGCTATGCGATTTTTCAGGTCGTCAACGGTTATCTGGGCGACCGGATCGGACCGCGCCGG ATGCTGGCGTTCTCCGGCATTCTGTGGGCGCTCGGCACGCTCGCGACCGGTGTCACAGGCGGCCTCGCGACGCTGGTGCT CTCGCGCGCGCTGGTCGGTCTCGGCGAAGCCGGCACGATTCCGAACGCCACGCGCGCAATGGCCAACTGGGTTCCGCTGG CAAAACGGGGCTTCGCGCAAGGCTTCACGCACTCGGCCGCGCGCGCGGCGGCCACCGTCACGCCGCCGCTGATCGTGCTG CTGATTCCGCTGCTCGGCTGGCGCGGCGCGTTTATCGCGCTCGGTTGCGTCAGCGCGATCTGGGTGGTGGTCTGGGCACT GTATTTCCGCGACGACCCACGCACGCATCCGTCGATCACTGCCGGCGAAGTCGACACGTTGCCGCCGTATGCCGGCCCGC GCCATCGCACGGCGGTGCCGTGGTGGGCGCTGATCCGGCGCATCCTGCCGGTCACGCTGGTGTTCTTCTGCCACGCATGG ACGCTGTGGCTGTATCTGAGCTGGCTGCCGAGCTTCTTTGTCGGCGTGTACGGGATCGATCTGAAGAGCACGGCGCTGTT CACGTCGGGCGTGTTTCTCGCCGGCGTGGTCGGCGATACGGCGGGCGGCCTGTTGACCGATGCGATCTACCGCCGCACCG GCAATCTGAATACGGCGCGCCGCAACGTGATCATCATGGGCTTTGCGGGCTCGCTGCTGTTTCTCACATGCGTGCTGTTC GTGCGCGACCGCACCGTGATCGCGTTGTGTCTGGCCGCTGCACTATTCTGTCTCGAATCCACCGAAGGCCCGATCTGGGC GGTGCCGATGGATATCGCGCCGGCCTTCGCGGGCGTCGCGAGCGGCTTCATCAGCACGGCGGCCGGACTCGCGGCCGTGG TGTCGCCGGTCGCGTTCGGCCTGATCACCGACATGACGGGCAGCTACCGCCTGCCGTTCGTCATGTCGATCGCGCTGCTG CTGGTGGGTATCGGGCTGTCGTTCTGGATTCGCCCTGACCGGCCGCTGCAAGCCGGCGCGAAACCCACGCTATCAACGAA ATCACTGGGAGTGCATTCATGA
Upstream 100 bases:
>100_bases TGTATTCCGAACGATCCGCGTCGCATGTTGACGGGCGTCCGCGACAATCGAAAATGAAGGAGCAAACCATGCAACACGAT AACCGGCAGGGCGGTTCGCG
Downstream 100 bases:
>100_bases AAGGAGAAGTCAGCAGCGTCGCGGTCGTCACCGGCGCGGCGCGCAATATTGGCCGCGAGATCGCGTTGCAACTCGCGGCG GCGGGCAATGCGGTGATCGT
Product: major facilitator superfamily metabolite/H(+) symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MKSKAGMFTGTTGRVFLLICAMYFIEYVDRVNLSIAAPLLKSEMHLSNTQLGIALSAFGYCYAIFQVVNGYLGDRIGPRR MLAFSGILWALGTLATGVTGGLATLVLSRALVGLGEAGTIPNATRAMANWVPLAKRGFAQGFTHSAARAAATVTPPLIVL LIPLLGWRGAFIALGCVSAIWVVVWALYFRDDPRTHPSITAGEVDTLPPYAGPRHRTAVPWWALIRRILPVTLVFFCHAW TLWLYLSWLPSFFVGVYGIDLKSTALFTSGVFLAGVVGDTAGGLLTDAIYRRTGNLNTARRNVIIMGFAGSLLFLTCVLF VRDRTVIALCLAAALFCLESTEGPIWAVPMDIAPAFAGVASGFISTAAGLAAVVSPVAFGLITDMTGSYRLPFVMSIALL LVGIGLSFWIRPDRPLQAGAKPTLSTKSLGVHS
Sequences:
>Translated_433_residues MKSKAGMFTGTTGRVFLLICAMYFIEYVDRVNLSIAAPLLKSEMHLSNTQLGIALSAFGYCYAIFQVVNGYLGDRIGPRR MLAFSGILWALGTLATGVTGGLATLVLSRALVGLGEAGTIPNATRAMANWVPLAKRGFAQGFTHSAARAAATVTPPLIVL LIPLLGWRGAFIALGCVSAIWVVVWALYFRDDPRTHPSITAGEVDTLPPYAGPRHRTAVPWWALIRRILPVTLVFFCHAW TLWLYLSWLPSFFVGVYGIDLKSTALFTSGVFLAGVVGDTAGGLLTDAIYRRTGNLNTARRNVIIMGFAGSLLFLTCVLF VRDRTVIALCLAAALFCLESTEGPIWAVPMDIAPAFAGVASGFISTAAGLAAVVSPVAFGLITDMTGSYRLPFVMSIALL LVGIGLSFWIRPDRPLQAGAKPTLSTKSLGVHS >Mature_433_residues MKSKAGMFTGTTGRVFLLICAMYFIEYVDRVNLSIAAPLLKSEMHLSNTQLGIALSAFGYCYAIFQVVNGYLGDRIGPRR MLAFSGILWALGTLATGVTGGLATLVLSRALVGLGEAGTIPNATRAMANWVPLAKRGFAQGFTHSAARAAATVTPPLIVL LIPLLGWRGAFIALGCVSAIWVVVWALYFRDDPRTHPSITAGEVDTLPPYAGPRHRTAVPWWALIRRILPVTLVFFCHAW TLWLYLSWLPSFFVGVYGIDLKSTALFTSGVFLAGVVGDTAGGLLTDAIYRRTGNLNTARRNVIIMGFAGSLLFLTCVLF VRDRTVIALCLAAALFCLESTEGPIWAVPMDIAPAFAGVASGFISTAAGLAAVVSPVAFGLITDMTGSYRLPFVMSIALL LVGIGLSFWIRPDRPLQAGAKPTLSTKSLGVHS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI6912666, Length=427, Percent_Identity=24.5901639344262, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI154350196, Length=374, Percent_Identity=25.9358288770053, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI9966811, Length=384, Percent_Identity=23.4375, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI9945322, Length=384, Percent_Identity=22.9166666666667, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI21322234, Length=434, Percent_Identity=24.8847926267281, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4885441, Length=370, Percent_Identity=23.5135135135135, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI148743791, Length=390, Percent_Identity=24.1025641025641, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI154800443, Length=402, Percent_Identity=24.1293532338308, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI148728191, Length=275, Percent_Identity=25.8181818181818, Blast_Score=66, Evalue=6e-11, Organism=Escherichia coli, GI2367379, Length=391, Percent_Identity=30.1790281329923, Blast_Score=165, Evalue=6e-42, Organism=Escherichia coli, GI87082320, Length=410, Percent_Identity=28.5365853658537, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1789152, Length=398, Percent_Identity=28.391959798995, Blast_Score=153, Evalue=3e-38, Organism=Escherichia coli, GI1789515, Length=398, Percent_Identity=25.1256281407035, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI2367193, Length=288, Percent_Identity=29.5138888888889, Blast_Score=117, Evalue=1e-27, Organism=Caenorhabditis elegans, GI115533556, Length=420, Percent_Identity=25.952380952381, Blast_Score=93, Evalue=3e-19, Organism=Caenorhabditis elegans, GI115533554, Length=429, Percent_Identity=26.3403263403263, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17552542, Length=367, Percent_Identity=27.2479564032698, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17554148, Length=353, Percent_Identity=22.3796033994334, Blast_Score=78, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17554962, Length=380, Percent_Identity=22.1052631578947, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25141318, Length=357, Percent_Identity=21.0084033613445, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25141316, Length=357, Percent_Identity=21.0084033613445, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25141341, Length=353, Percent_Identity=21.2464589235127, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997452, Length=359, Percent_Identity=22.8412256267409, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI86561091, Length=241, Percent_Identity=21.5767634854772, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17569727, Length=380, Percent_Identity=23.4210526315789, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17535049, Length=247, Percent_Identity=25.5060728744939, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI45550460, Length=464, Percent_Identity=26.2931034482759, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24655255, Length=415, Percent_Identity=26.0240963855422, Blast_Score=106, Evalue=3e-23, Organism=Drosophila melanogaster, GI24648416, Length=438, Percent_Identity=25.7990867579909, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI21356189, Length=438, Percent_Identity=25.7990867579909, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24584153, Length=399, Percent_Identity=22.5563909774436, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI24639764, Length=400, Percent_Identity=23.5, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI24583789, Length=353, Percent_Identity=22.6628895184136, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI28573708, Length=386, Percent_Identity=24.6113989637306, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI28573707, Length=386, Percent_Identity=24.6113989637306, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI19922400, Length=427, Percent_Identity=25.2927400468384, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24654215, Length=427, Percent_Identity=25.2927400468384, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24580790, Length=363, Percent_Identity=22.038567493113, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24641682, Length=398, Percent_Identity=23.8693467336683, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI28573299, Length=402, Percent_Identity=25.1243781094527, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24658666, Length=415, Percent_Identity=21.9277108433735, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI20129235, Length=355, Percent_Identity=26.7605633802817, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI62484226, Length=440, Percent_Identity=25, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24655271, Length=429, Percent_Identity=23.0769230769231, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI20130135, Length=429, Percent_Identity=23.0769230769231, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24658674, Length=385, Percent_Identity=23.1168831168831, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI19920686, Length=392, Percent_Identity=23.2142857142857, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI281361682, Length=342, Percent_Identity=21.9298245614035, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24658658, Length=434, Percent_Identity=22.3502304147465, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24658696, Length=392, Percent_Identity=22.4489795918367, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI45550495, Length=387, Percent_Identity=21.7054263565891, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46264; Mature: 46264
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKAGMFTGTTGRVFLLICAMYFIEYVDRVNLSIAAPLLKSEMHLSNTQLGIALSAFGY CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH CYAIFQVVNGYLGDRIGPRRMLAFSGILWALGTLATGVTGGLATLVLSRALVGLGEAGTI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PNATRAMANWVPLAKRGFAQGFTHSAARAAATVTPPLIVLLIPLLGWRGAFIALGCVSAI CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH WVVVWALYFRDDPRTHPSITAGEVDTLPPYAGPRHRTAVPWWALIRRILPVTLVFFCHAW HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH TLWLYLSWLPSFFVGVYGIDLKSTALFTSGVFLAGVVGDTAGGLLTDAIYRRTGNLNTAR HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC RNVIIMGFAGSLLFLTCVLFVRDRTVIALCLAAALFCLESTEGPIWAVPMDIAPAFAGVA CCEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH SGFISTAAGLAAVVSPVAFGLITDMTGSYRLPFVMSIALLLVGIGLSFWIRPDRPLQAGA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHEEECCCCCCCCCC KPTLSTKSLGVHS CCCCCCCCCCCCC >Mature Secondary Structure MKSKAGMFTGTTGRVFLLICAMYFIEYVDRVNLSIAAPLLKSEMHLSNTQLGIALSAFGY CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH CYAIFQVVNGYLGDRIGPRRMLAFSGILWALGTLATGVTGGLATLVLSRALVGLGEAGTI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PNATRAMANWVPLAKRGFAQGFTHSAARAAATVTPPLIVLLIPLLGWRGAFIALGCVSAI CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH WVVVWALYFRDDPRTHPSITAGEVDTLPPYAGPRHRTAVPWWALIRRILPVTLVFFCHAW HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH TLWLYLSWLPSFFVGVYGIDLKSTALFTSGVFLAGVVGDTAGGLLTDAIYRRTGNLNTAR HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC RNVIIMGFAGSLLFLTCVLFVRDRTVIALCLAAALFCLESTEGPIWAVPMDIAPAFAGVA CCEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH SGFISTAAGLAAVVSPVAFGLITDMTGSYRLPFVMSIALLLVGIGLSFWIRPDRPLQAGA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHEEECCCCCCCCCC KPTLSTKSLGVHS CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]