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The map label for this gene is rpoH [H]

Identifier: 91781700

GI number: 91781700

Start: 352292

End: 353215

Strand: Reverse

Name: rpoH [H]

Synonym: Bxe_A4146

Alternate gene names: 91781700

Gene position: 353215-352292 (Counterclockwise)

Preceding gene: 91781703

Following gene: 91781699

Centisome position: 7.21

GC content: 62.45

Gene sequence:

>924_bases
ATGACCCTTCCGAGTACTTTGAGCCCGTCGTCGGCTAAGGCCGCTTCGGCAGGTGCACTGGCGCTCTCGCATTCCTCGCT
GCTGCCCGGTCAACTGGGCAATATCGACGCCTACATCCAGGCCGTAAATCGGATTCCGATGCTGACGCCGGCGGAAGAAC
GCCAGTTCGCCACCGAATTTCGCGAGCAGGACAACCTTGAGTCCGCACGCCGCCTCGTCCTGTCGCACCTGCGGCTGGTC
GTGTCGATCGCGCGCAACTATCTGGGCTATGGACTGCCGCACGCCGACCTGATCCAGGAAGGCAATATCGGCCTGATGAA
GGCCGTGAAGCGCTTCGATCCGGAGCAGAACGTGCGCCTCGTGTCGTACGCCATGCACTGGATCAAGGCCGAGATCCACG
AATACATTCTGCGCAACTGGCGCATGGTGAAAGTCGCCACGACCAAGGCGCAGCGCAAGCTGTTCTTCAACCTGCGCAGC
CACAAGCAAGGGCTGGGCGCGTTCACGCCGGACGAGATCGAAGGTCTCGCCAAAGAGCTGAATGTGAAACGCGAAGAAGT
CTCCGAAATGGAAACGCGCCTCTCGGGCGGCGACATCGCGCTGGAAGGCCAGGTTGAAGACGGCGAGGAGTCGTACGCGC
CGATCGCCTATCTGGCCGACTCGCATAGCGAACCGACCGCCGTGCTGGCTTCGCGTCAGCGCGACAAGCTGCAAAGCGAC
GGTATCGCGAGCGCGCTGGACGCACTGGACGCCCGCAGCCGCCGCATCATCGAGGCACGCTGGCTGAAGGTGGAAGACGA
CGGTTCGGGCGGCTCCACGCTGCACGAACTGGCCGACGAATTCGGCGTGTCCGCCGAACGTATTCGCCAGATCGAGGCGA
GCGCAATGAAGAAGATGCGCGGTGCACTCACCGAATATGCGTAA

Upstream 100 bases:

>100_bases
TTAGCACTCGGCAAATCAGAGTGCTAACATCCAACGCTGGAGTCGTTACCTGAACAAGCTTTTGTCTGATTCCAAAGGAG
TTTTCCACGTGAGCCATGCA

Downstream 100 bases:

>100_bases
AGCCTGAAGCGTTTCAGCACGCCGGTTCGTCCGGCGCGCGGTAGCCAGACCGCCAAGCCTCGCCCTCGTAAGACGGCGGG
GCTTTTTTTTTCGCCCGCGC

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTLPSTLSPSSAKAASAGALALSHSSLLPGQLGNIDAYIQAVNRIPMLTPAEERQFATEFREQDNLESARRLVLSHLRLV
VSIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPEQNVRLVSYAMHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRS
HKQGLGAFTPDEIEGLAKELNVKREEVSEMETRLSGGDIALEGQVEDGEESYAPIAYLADSHSEPTAVLASRQRDKLQSD
GIASALDALDARSRRIIEARWLKVEDDGSGGSTLHELADEFGVSAERIRQIEASAMKKMRGALTEYA

Sequences:

>Translated_307_residues
MTLPSTLSPSSAKAASAGALALSHSSLLPGQLGNIDAYIQAVNRIPMLTPAEERQFATEFREQDNLESARRLVLSHLRLV
VSIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPEQNVRLVSYAMHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRS
HKQGLGAFTPDEIEGLAKELNVKREEVSEMETRLSGGDIALEGQVEDGEESYAPIAYLADSHSEPTAVLASRQRDKLQSD
GIASALDALDARSRRIIEARWLKVEDDGSGGSTLHELADEFGVSAERIRQIEASAMKKMRGALTEYA
>Mature_306_residues
TLPSTLSPSSAKAASAGALALSHSSLLPGQLGNIDAYIQAVNRIPMLTPAEERQFATEFREQDNLESARRLVLSHLRLVV
SIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPEQNVRLVSYAMHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSH
KQGLGAFTPDEIEGLAKELNVKREEVSEMETRLSGGDIALEGQVEDGEESYAPIAYLADSHSEPTAVLASRQRDKLQSDG
IASALDALDARSRRIIEARWLKVEDDGSGGSTLHELADEFGVSAERIRQIEASAMKKMRGALTEYA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=280, Percent_Identity=54.6428571428571, Blast_Score=299, Evalue=2e-82,
Organism=Escherichia coli, GI1789098, Length=270, Percent_Identity=32.2222222222222, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789448, Length=236, Percent_Identity=30.5084745762712, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 33998; Mature: 33867

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPSTLSPSSAKAASAGALALSHSSLLPGQLGNIDAYIQAVNRIPMLTPAEERQFATEF
CCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
REQDNLESARRLVLSHLRLVVSIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPEQNVRL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHH
VSYAMHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKQGLGAFTPDEIEGLAKEL
HHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NVKREEVSEMETRLSGGDIALEGQVEDGEESYAPIAYLADSHSEPTAVLASRQRDKLQSD
CCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHC
GIASALDALDARSRRIIEARWLKVEDDGSGGSTLHELADEFGVSAERIRQIEASAMKKMR
CHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GALTEYA
HHHHCCC
>Mature Secondary Structure 
TLPSTLSPSSAKAASAGALALSHSSLLPGQLGNIDAYIQAVNRIPMLTPAEERQFATEF
CCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
REQDNLESARRLVLSHLRLVVSIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPEQNVRL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHH
VSYAMHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKQGLGAFTPDEIEGLAKEL
HHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NVKREEVSEMETRLSGGDIALEGQVEDGEESYAPIAYLADSHSEPTAVLASRQRDKLQSD
CCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHC
GIASALDALDARSRRIIEARWLKVEDDGSGGSTLHELADEFGVSAERIRQIEASAMKKMR
CHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GALTEYA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]