BacMap

Definition	Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession	NC_007951
Length	4,895,836

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The map label for this gene is yhdG [H]

Identifier: 91781498

GI number: 91781498

Start: 138005

End: 139396

Strand: Reverse

Name: yhdG [H]

Synonym: Bxe_A4348

Alternate gene names: 91781498

Gene position: 139396-138005 (Counterclockwise)

Preceding gene: 91781499

Following gene: 91781497

Centisome position: 2.85

GC content: 61.14

Gene sequence:

>1392_bases
ATGTCCCTGTTTCGCAAGAAGAGCGTCGAGCACATGATCGCCGCAAGTGCTCAGAACGCCGGTTTGAAGAAAGCGCTCGG
CGCGCTCGATCTGACCTTCCTCGGCGTCGGCGCCATTATCGGCACCGGTATTTTCGTGCTGACCGGCACGGGCGCCGTGC
AGGCCGGCCCGGCGCTGATGATCTCGTTCCTGATCGCGGCGCTCGCCTGCGGCTTCGCCGCCCTCGCCTACGCAGAATTT
GCCTCGACGATTCCGGTGGCGGGATCGATCTACACGTACTCGTATGCGACGCTCGGCGAACTGGCCGCATGGATCATCGG
CTGGGACCTGATGCTCGAATACGGGCTTGCCACCTCCGCTGTCTCGGTGGGCTGGTCGGGTTATCTGCAATCGTTGCTGT
CGGGCTTCGGCGTGTCCTTGCCGGTTGCGTTGACGGCGGCGCCAGGTGCGTTGCCAGGTCACGACACGCTCTTCAACCTG
CCCGCGTTCCTCGTGATGATGGCGATCACGGCGCTGTTGTCGTTCGGCGTGCGCGAGTCGGCGCGGATCAACAACATCAT
GGTCGCGATCAAGGTGATCGTGGTGTTGCTGGTCATCTGCGTGGGCGTCTTTCATGTGACGCCGGCCAACTGGCATCCGT
TCATGCCGAATGGCTGGAACGGCGTGTTCGGCGCGGCGGCGGTGATGTTCTTCGCGTTCATCGGTTTCGACTCCGTGTCG
TCCGCGGCGGAAGAGGTGAAGAATCCGAAGCGCGATCTGCCGATCGGAATCATTGCGTCGCTGGGCGTTTGCGCGGTGTT
GTATGTGGCGGTGGCCGCCGTCGTCACCGGCATCGTGCCGTCGGCGCAGTTCGCGAATATTTCGCACCCGGTCTCGTACG
CGTTGCAGGTTGCGGGGCAAAAGTGGGTGGCGGGGTTTATCGACCTCGGCGCCGTGCTGGGTATGTTGACGGTGATTCTG
GTGATGGCTTATGGCCAGACCCGGGTGATTTTCGCCATGTCGCGCGACGGGTTGCTGCCGGCGCGGCTTTCGCGGGTGCA
TCCGCGGTTCGCTACGCCGTTTTTTACTACGTGGCTCGTGGGGATTTTCTTTGGATTGATCGGGGCGGTGGTGCCGTTGA
ATGTGCTGGCCGAGTTGATCAATATCGGCACGTTGGCCGCGTTTTCGATGGTGTCGATTGCGGTTCTCGTTTTGCGGAAG
ACGCATCCTGAATTGCCGCGGGCGTTCCGGTGTCCTGGGGTGCCGGTTGTGCCGGTGTTGGCGGTTGCTTCCTGCCTTTT
CCTGATGATTAATCTTCAGGCTGTTACGTGGGTGGCGTTTGTGGTTTGGTTGCTCGTTGGGATGGTTGTTTATTTTGGGT
ATTCGCGGAGGCATTCCAGGTTGAGCAGCTAA

Upstream 100 bases:

>100_bases
AAAGCACGCGCCAGAACGGTGCAGAGTGCCGATCCGCTAAAATCGTGGGTTTCCCGACATTCGGCGCGCAACACGCGTGC
ACTACTGGAGACCCTCGCCA

Downstream 100 bases:

>100_bases
TCGGGGGGTTGTCTGGTTGGTGTTTGTGGGTGCGTTGGTGTTTTTTTGTTGGCCTTTCCTTGAGTTCTTTGTGGTTTATT
AGGGTTGCCCCTGTGCGGGG

Product: basic amino acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MSLFRKKSVEHMIAASAQNAGLKKALGALDLTFLGVGAIIGTGIFVLTGTGAVQAGPALMISFLIAALACGFAALAYAEF
ASTIPVAGSIYTYSYATLGELAAWIIGWDLMLEYGLATSAVSVGWSGYLQSLLSGFGVSLPVALTAAPGALPGHDTLFNL
PAFLVMMAITALLSFGVRESARINNIMVAIKVIVVLLVICVGVFHVTPANWHPFMPNGWNGVFGAAAVMFFAFIGFDSVS
SAAEEVKNPKRDLPIGIIASLGVCAVLYVAVAAVVTGIVPSAQFANISHPVSYALQVAGQKWVAGFIDLGAVLGMLTVIL
VMAYGQTRVIFAMSRDGLLPARLSRVHPRFATPFFTTWLVGIFFGLIGAVVPLNVLAELINIGTLAAFSMVSIAVLVLRK
THPELPRAFRCPGVPVVPVLAVASCLFLMINLQAVTWVAFVVWLLVGMVVYFGYSRRHSRLSS

Sequences:

>Translated_463_residues
MSLFRKKSVEHMIAASAQNAGLKKALGALDLTFLGVGAIIGTGIFVLTGTGAVQAGPALMISFLIAALACGFAALAYAEF
ASTIPVAGSIYTYSYATLGELAAWIIGWDLMLEYGLATSAVSVGWSGYLQSLLSGFGVSLPVALTAAPGALPGHDTLFNL
PAFLVMMAITALLSFGVRESARINNIMVAIKVIVVLLVICVGVFHVTPANWHPFMPNGWNGVFGAAAVMFFAFIGFDSVS
SAAEEVKNPKRDLPIGIIASLGVCAVLYVAVAAVVTGIVPSAQFANISHPVSYALQVAGQKWVAGFIDLGAVLGMLTVIL
VMAYGQTRVIFAMSRDGLLPARLSRVHPRFATPFFTTWLVGIFFGLIGAVVPLNVLAELINIGTLAAFSMVSIAVLVLRK
THPELPRAFRCPGVPVVPVLAVASCLFLMINLQAVTWVAFVVWLLVGMVVYFGYSRRHSRLSS
>Mature_462_residues
SLFRKKSVEHMIAASAQNAGLKKALGALDLTFLGVGAIIGTGIFVLTGTGAVQAGPALMISFLIAALACGFAALAYAEFA
STIPVAGSIYTYSYATLGELAAWIIGWDLMLEYGLATSAVSVGWSGYLQSLLSGFGVSLPVALTAAPGALPGHDTLFNLP
AFLVMMAITALLSFGVRESARINNIMVAIKVIVVLLVICVGVFHVTPANWHPFMPNGWNGVFGAAAVMFFAFIGFDSVSS
AAEEVKNPKRDLPIGIIASLGVCAVLYVAVAAVVTGIVPSAQFANISHPVSYALQVAGQKWVAGFIDLGAVLGMLTVILV
MAYGQTRVIFAMSRDGLLPARLSRVHPRFATPFFTTWLVGIFFGLIGAVVPLNVLAELINIGTLAAFSMVSIAVLVLRKT
HPELPRAFRCPGVPVVPVLAVASCLFLMINLQAVTWVAFVVWLLVGMVVYFGYSRRHSRLSS

Specific function: Probable Amino-Acid Or Metabolite Transport Protein. [C]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI258645169, Length=427, Percent_Identity=35.8313817330211, Blast_Score=225, Evalue=5e-59,
Organism=Homo sapiens, GI4507047, Length=437, Percent_Identity=35.9267734553776, Blast_Score=225, Evalue=7e-59,
Organism=Homo sapiens, GI258614003, Length=427, Percent_Identity=35.3629976580796, Blast_Score=225, Evalue=8e-59,
Organism=Homo sapiens, GI258614005, Length=427, Percent_Identity=35.3629976580796, Blast_Score=225, Evalue=8e-59,
Organism=Homo sapiens, GI181337167, Length=413, Percent_Identity=35.3510895883777, Blast_Score=210, Evalue=3e-54,
Organism=Homo sapiens, GI110347453, Length=408, Percent_Identity=35.2941176470588, Blast_Score=205, Evalue=7e-53,
Organism=Homo sapiens, GI114326544, Length=428, Percent_Identity=33.8785046728972, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI114326550, Length=428, Percent_Identity=33.8785046728972, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI187423910, Length=494, Percent_Identity=24.6963562753036, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI7657591, Length=494, Percent_Identity=24.6963562753036, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI115648063, Length=430, Percent_Identity=24.1860465116279, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI115648022, Length=430, Percent_Identity=24.1860465116279, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI33286428, Length=416, Percent_Identity=25.9615384615385, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI186910308, Length=416, Percent_Identity=25.9615384615385, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI186910306, Length=416, Percent_Identity=25.9615384615385, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI186910304, Length=416, Percent_Identity=25.9615384615385, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI71979932, Length=435, Percent_Identity=25.2873563218391, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI7657683, Length=400, Percent_Identity=25.25, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI9790235, Length=293, Percent_Identity=23.8907849829352, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI87082023, Length=466, Percent_Identity=22.9613733905579, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081915, Length=426, Percent_Identity=24.4131455399061, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1786602, Length=468, Percent_Identity=23.2905982905983, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081869, Length=475, Percent_Identity=22.5263157894737, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786302, Length=419, Percent_Identity=22.9116945107399, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786789, Length=347, Percent_Identity=22.478386167147, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788480, Length=485, Percent_Identity=24.7422680412371, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789017, Length=362, Percent_Identity=24.3093922651934, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786694, Length=265, Percent_Identity=24.5283018867925, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87082250, Length=464, Percent_Identity=24.3534482758621, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786908, Length=330, Percent_Identity=24.5454545454545, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI2367353, Length=458, Percent_Identity=24.0174672489083, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790653, Length=405, Percent_Identity=21.9753086419753, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17532491, Length=394, Percent_Identity=35.5329949238579, Blast_Score=226, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI17531343, Length=408, Percent_Identity=34.0686274509804, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17533459, Length=414, Percent_Identity=32.8502415458937, Blast_Score=203, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17568033, Length=432, Percent_Identity=22.9166666666667, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17540018, Length=444, Percent_Identity=23.1981981981982, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17537453, Length=367, Percent_Identity=24.5231607629428, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32566695, Length=435, Percent_Identity=25.2873563218391, Blast_Score=77, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193208714, Length=433, Percent_Identity=25.8660508083141, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71982612, Length=445, Percent_Identity=23.5955056179775, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982608, Length=445, Percent_Identity=23.5955056179775, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI32566699, Length=380, Percent_Identity=25.2631578947368, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71990446, Length=452, Percent_Identity=23.6725663716814, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319991, Length=363, Percent_Identity=25.068870523416, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321629, Length=405, Percent_Identity=22.4691358024691, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221512776, Length=416, Percent_Identity=37.9807692307692, Blast_Score=263, Evalue=1e-70,
Organism=Drosophila melanogaster, GI24666159, Length=416, Percent_Identity=37.9807692307692, Blast_Score=263, Evalue=2e-70,
Organism=Drosophila melanogaster, GI24668806, Length=432, Percent_Identity=35.6481481481481, Blast_Score=248, Evalue=4e-66,
Organism=Drosophila melanogaster, GI21356285, Length=432, Percent_Identity=35.6481481481481, Blast_Score=248, Evalue=4e-66,
Organism=Drosophila melanogaster, GI24668802, Length=432, Percent_Identity=35.6481481481481, Blast_Score=248, Evalue=4e-66,
Organism=Drosophila melanogaster, GI24667468, Length=423, Percent_Identity=34.51536643026, Blast_Score=237, Evalue=1e-62,
Organism=Drosophila melanogaster, GI161077963, Length=424, Percent_Identity=35.6132075471698, Blast_Score=203, Evalue=2e-52,
Organism=Drosophila melanogaster, GI281366235, Length=414, Percent_Identity=34.0579710144928, Blast_Score=202, Evalue=5e-52,
Organism=Drosophila melanogaster, GI116007820, Length=414, Percent_Identity=34.0579710144928, Blast_Score=202, Evalue=5e-52,
Organism=Drosophila melanogaster, GI116007818, Length=414, Percent_Identity=33.8164251207729, Blast_Score=197, Evalue=9e-51,
Organism=Drosophila melanogaster, GI85725152, Length=414, Percent_Identity=33.8164251207729, Blast_Score=197, Evalue=9e-51,
Organism=Drosophila melanogaster, GI21357367, Length=441, Percent_Identity=25.6235827664399, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI221331183, Length=440, Percent_Identity=25, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI17647653, Length=440, Percent_Identity=25, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24664379, Length=440, Percent_Identity=25, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24651635, Length=420, Percent_Identity=26.1904761904762, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24651633, Length=420, Percent_Identity=26.1904761904762, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641993, Length=421, Percent_Identity=25.1781472684086, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641995, Length=421, Percent_Identity=25.1781472684086, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45550968, Length=470, Percent_Identity=23.1914893617021, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19921172, Length=470, Percent_Identity=23.1914893617021, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004758
- InterPro:   IPR015606 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 48815; Mature: 48684

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFRKKSVEHMIAASAQNAGLKKALGALDLTFLGVGAIIGTGIFVLTGTGAVQAGPALM
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHCCHHHH
ISFLIAALACGFAALAYAEFASTIPVAGSIYTYSYATLGELAAWIIGWDLMLEYGLATSA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSVGWSGYLQSLLSGFGVSLPVALTAAPGALPGHDTLFNLPAFLVMMAITALLSFGVRES
HHHCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
ARINNIMVAIKVIVVLLVICVGVFHVTPANWHPFMPNGWNGVFGAAAVMFFAFIGFDSVS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SAAEEVKNPKRDLPIGIIASLGVCAVLYVAVAAVVTGIVPSAQFANISHPVSYALQVAGQ
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHH
KWVAGFIDLGAVLGMLTVILVMAYGQTRVIFAMSRDGLLPARLSRVHPRFATPFFTTWLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHH
GIFFGLIGAVVPLNVLAELINIGTLAAFSMVSIAVLVLRKTHPELPRAFRCPGVPVVPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHH
AVASCLFLMINLQAVTWVAFVVWLLVGMVVYFGYSRRHSRLSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure 
SLFRKKSVEHMIAASAQNAGLKKALGALDLTFLGVGAIIGTGIFVLTGTGAVQAGPALM
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHCCHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]