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The map label for this gene is yafC [C]

Identifier: 91781426

GI number: 91781426

Start: 56137

End: 57240

Strand: Direct

Name: yafC [C]

Synonym: Bxe_A4420

Alternate gene names: 91781426

Gene position: 56137-57240 (Clockwise)

Preceding gene: 91781424

Following gene: 91781430

Centisome position: 1.15

GC content: 62.5

Gene sequence:

>1104_bases
ATGGATCATTTGCAGTCGATGCGAGTTTTCGTCAAAGTGGCGGATCTCGGCAGTTTTGCCCGCGCTGCGAGCGCGATGGA
TATTTCCAACGCAGTGGCCACCCGTCACGTTGCTGACCTCGAAGGCCGTCTTGGTACGCGGCTGCTCAATCGCACCACTC
GCAGCTTGTCTCTGACCGAATCCGGCCAGGTCTATCTCGAGCGCGCGCGCCAGATTCTCGACGAACTGGAAGACGTCGAG
CAGATGGTGGTCGCGCGCAATCACGAACCGGTCGGCACGTTGCGAATCGTTGCGCCGGTCGTATTCGGCTTGCACAATCT
CGCGCCCGTGCTTCAGACGTACGCGGAGCGTTACCCGAAAGTCATTCCCGACGTCACGCTGGTTGACCGTCAGGTCGATC
TGGTCGAAGAAGGCTTCGACGTGGGCGTGGTGATCGCGCGGCAAATGCGCAGCGCAAGCATCGTCACACGGCGTCTCACC
ACGGGTTGCATGACGGTATGCGCCACGCCGGCATATCTGGAAAAGCACGGCATGCCCACGCGTCCGGAGCATCTGCTCGA
GCATCCGTGCCTGAGCCTGCCTTCCGAATATTGGGGCGACGAGCGTGTGTTCACCGGCCCGGAAGGCGAGGTGCGCGTGC
GTCCGTCGAACGTGATCGTCGCGAACAACACGGAAATGCTGCGTCAGTTCGCGCTGCTCGGCATGGGCATTGCGATCCTG
CCGAGCTATCTGATCGGCCGCGACATGACGCGCGGCAGGCTCGTGCGCCTGCTCGGCGACTACCGGTTGCCGCAGGTCGA
GATCAACATCGCGTATCCGAGCCGGCGCCATTTGCCGGCAAAGGTGCGCACGTTCATCGACCATCTGGTCGAGCATTTCA
GCCAGACACCGAACAGCCTGCTCGGCGAACAGTGGATCAAGGAGGACGGCCTTGGCCGGTCCGCCGTGACGACGGCGCCC
GATTCCGCTGATCCCATGCCGCCGGAAGCGTTCGACGGCGCTGAGCCGCTCTCACGCCTGCTGGACAGCGAGTTATCGCC
ACTGCCGAAGACACTGGCAAAAACAACGCCTCGCACTCGGTCCACAGTCTTGTCGCCGCTGTAA

Upstream 100 bases:

>100_bases
GCAACTTACACACGATTTCGCGAGTCGTAGGAGAATTCCAAGTTCGCTTCACTGGTTTTCACCAATTGTCAGGAAGCAGT
AACACGGCAGGAGTTGTCCT

Downstream 100 bases:

>100_bases
GTGTTGGAATTGGTGTTGGATCGATAAAGCCGGTATCGCTTGCAAAGGGCGCTTTCCGGCGGACAAACGAAAAAAGGCGC
GGTCATTTGTGTGACCGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYLERARQILDELEDVE
QMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLT
TGCMTVCATPAYLEKHGMPTRPEHLLEHPCLSLPSEYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL
PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQTPNSLLGEQWIKEDGLGRSAVTTAP
DSADPMPPEAFDGAEPLSRLLDSELSPLPKTLAKTTPRTRSTVLSPL

Sequences:

>Translated_367_residues
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYLERARQILDELEDVE
QMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLT
TGCMTVCATPAYLEKHGMPTRPEHLLEHPCLSLPSEYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL
PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQTPNSLLGEQWIKEDGLGRSAVTTAP
DSADPMPPEAFDGAEPLSRLLDSELSPLPKTLAKTTPRTRSTVLSPL
>Mature_367_residues
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYLERARQILDELEDVE
QMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLT
TGCMTVCATPAYLEKHGMPTRPEHLLEHPCLSLPSEYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL
PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQTPNSLLGEQWIKEDGLGRSAVTTAP
DSADPMPPEAFDGAEPLSRLLDSELSPLPKTLAKTTPRTRSTVLSPL

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=304, Percent_Identity=34.5394736842105, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=32.9931972789116, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=29.553264604811, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87081978, Length=308, Percent_Identity=32.1428571428571, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=29.4701986754967, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=29.0540540540541, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=27.9310344827586, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=28.0155642023346, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=24.9158249158249, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI157672245, Length=143, Percent_Identity=28.6713286713287, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=151, Percent_Identity=31.1258278145695, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=262, Percent_Identity=24.0458015267176, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788481, Length=143, Percent_Identity=27.972027972028, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 40752; Mature: 40752

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPT
HCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
RPEHLLEHPCLSLPSEYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL
CHHHHHHCCHHCCCHHHCCCCCEEECCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHH
PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQTPNSL
HHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHH
LGEQWIKEDGLGRSAVTTAPDSADPMPPEAFDGAEPLSRLLDSELSPLPKTLAKTTPRTR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHH
STVLSPL
HHHCCCC
>Mature Secondary Structure
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPT
HCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
RPEHLLEHPCLSLPSEYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL
CHHHHHHCCHHCCCHHHCCCCCEEECCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHH
PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQTPNSL
HHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHH
LGEQWIKEDGLGRSAVTTAPDSADPMPPEAFDGAEPLSRLLDSELSPLPKTLAKTTPRTR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHH
STVLSPL
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]