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The map label for this gene is slmA [H]

Identifier: 161621319

GI number: 161621319

Start: 92179

End: 92880

Strand: Reverse

Name: slmA [H]

Synonym: Bxe_A4387

Alternate gene names: 161621319

Gene position: 92880-92179 (Counterclockwise)

Preceding gene: 91781460

Following gene: 91781458

Centisome position: 1.9

GC content: 63.96

Gene sequence:

>702_bases
ATGCAGCCGATCGACAAGCCTGACCAAGTCTTAGCCGAACACGAACCGACCACCACGCTCGCCGCCCCGCGCGCGCAACG
CCTGAAACCGGGCGAGCGTCGCGTGCACATCCTCCAGACGCTCGCCGCGATGCTGGAAACGCCCAAAAGCGAAAAGATCA
CCACCGCGGCGCTGGCCGCCCGGCTAGGCGTATCGGAAGCCGCGCTGTACCGGCATTTCGCCAGCAAGGCGCAGATGTTC
GAAGGGCTCATCGAGTTCATCGAGCAAACCATCTTCGGGTTGATCAACCAGATCGCCGACAAGGAAAGCAACGGCGTGCT
GCAGGCCCGCGCAATCGCATTGATGCTGCTCAACTTTCCCGCGAAGAACCCCGGCATGACGCGCGTGCTGACCTGCGAGG
CGCTGGTCGGCGAACATGAACGCCTGACCGAGCGCGTCAATCAGATGCTGGAGCGCGTCGAAGCGTCGCTGAAACAATGT
CTGCGCCTCGCCCAAATGGAAGCGAACGCCGGCGCGAGTCCGGCTGACGGCACCATCGCACAGCACGACACCGTCCCACT
GCCGGCCAACTACGATCCCGCCATTCGCGCGAGTCTGCTGCTGAGCTATATCATCGGCCGCTGGCACCGGTATGTACGCA
GCGGCTTCGCGCGGCCGCCCGCCGAACACGCCGACGCGCAACTGCTGCTGATTCTTCAGTAG

Upstream 100 bases:

>100_bases
GCCGGCCGCACTATGTCGACCGGACCATTCGTTCGTTAAAATCGCTACGACTGAGCACCCGCTCGGTTCGATTGAAGAGA
CAGCAGACGGGACGACAGCC

Downstream 100 bases:

>100_bases
TCCGCGCGGCGTGCACCGCGCCGCGCCCCCCGCGACGTTGCCGCATGAAAATTTCCGCTATACTTTGTGCCTGACTGCGG
CGCCCCGATGCATCTGGAGC

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MQPIDKPDQVLAEHEPTTTLAAPRAQRLKPGERRVHILQTLAAMLETPKSEKITTAALAARLGVSEAALYRHFASKAQMF
EGLIEFIEQTIFGLINQIADKESNGVLQARAIALMLLNFPAKNPGMTRVLTCEALVGEHERLTERVNQMLERVEASLKQC
LRLAQMEANAGASPADGTIAQHDTVPLPANYDPAIRASLLLSYIIGRWHRYVRSGFARPPAEHADAQLLLILQ

Sequences:

>Translated_233_residues
MQPIDKPDQVLAEHEPTTTLAAPRAQRLKPGERRVHILQTLAAMLETPKSEKITTAALAARLGVSEAALYRHFASKAQMF
EGLIEFIEQTIFGLINQIADKESNGVLQARAIALMLLNFPAKNPGMTRVLTCEALVGEHERLTERVNQMLERVEASLKQC
LRLAQMEANAGASPADGTIAQHDTVPLPANYDPAIRASLLLSYIIGRWHRYVRSGFARPPAEHADAQLLLILQ
>Mature_233_residues
MQPIDKPDQVLAEHEPTTTLAAPRAQRLKPGERRVHILQTLAAMLETPKSEKITTAALAARLGVSEAALYRHFASKAQMF
EGLIEFIEQTIFGLINQIADKESNGVLQARAIALMLLNFPAKNPGMTRVLTCEALVGEHERLTERVNQMLERVEASLKQC
LRLAQMEANAGASPADGTIAQHDTVPLPANYDPAIRASLLLSYIIGRWHRYVRSGFARPPAEHADAQLLLILQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=200, Percent_Identity=44.5, Blast_Score=143, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25700; Mature: 25700

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPIDKPDQVLAEHEPTTTLAAPRAQRLKPGERRVHILQTLAAMLETPKSEKITTAALAA
CCCCCCHHHHHHCCCCCCHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RLGVSEAALYRHFASKAQMFEGLIEFIEQTIFGLINQIADKESNGVLQARAIALMLLNFP
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
AKNPGMTRVLTCEALVGEHERLTERVNQMLERVEASLKQCLRLAQMEANAGASPADGTIA
CCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QHDTVPLPANYDPAIRASLLLSYIIGRWHRYVRSGFARPPAEHADAQLLLILQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MQPIDKPDQVLAEHEPTTTLAAPRAQRLKPGERRVHILQTLAAMLETPKSEKITTAALAA
CCCCCCHHHHHHCCCCCCHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RLGVSEAALYRHFASKAQMFEGLIEFIEQTIFGLINQIADKESNGVLQARAIALMLLNFP
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
AKNPGMTRVLTCEALVGEHERLTERVNQMLERVEASLKQCLRLAQMEANAGASPADGTIA
CCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QHDTVPLPANYDPAIRASLLLSYIIGRWHRYVRSGFARPPAEHADAQLLLILQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA