| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is fimB [H]
Identifier: 91790499
GI number: 91790499
Start: 4958244
End: 4959023
Strand: Reverse
Name: fimB [H]
Synonym: Bpro_4670
Alternate gene names: 91790499
Gene position: 4959023-4958244 (Counterclockwise)
Preceding gene: 91790501
Following gene: 91790498
Centisome position: 95.36
GC content: 60.64
Gene sequence:
>780_bases ATGCTTTCACGTTCATCTTCCTGGGGCCATCGCCTCTATGCCTCGGGCATTCATTTGGGCCTCAGCCTGCTGGTGGCCGG TTTGGCGGCACTGCTGGTGTTTGCCGTCTGGTACCCCTACCCTTACCGCGAAATTTCCGGCGGGCGCAGCCTGTTTTTGC TGGTGATTACCGTCGACGTGATCATGGGCCCGCTGCTGACATTGGCCGTCTTCAACCGCAGCAAGCCGCTCAACGAGCTG CGCCTTGACCTGGCTGTCATCGGTTTGTTGCAACTGGCAGCGCTGGCCTACGGCCTGTGGACCGTAGCGGTGGCTCGGCC GGTGCATCTGGTGTTTGAAATTGACCGTTTTCGGGTGGTGCATGCGATTGACGTTCCACCGGAATTATTGGACCGCGCGC CAGCAGAGTTGCGGCACCTGCCGCTGGCGGGGCCCACACAGCTTTCTGTGCGTGAGTTCAAGAGCGCCCAGGAAAGCTTT GAGACCACCATGGCGGCGATACAAGGCGTGGCACTCGGCGCCCGGCCTGATTTGTGGCAAAGCTACGAACAGGCGAAACC GCAAATCAAGGCACGCGCGCGCCCCGTGAGCGAGCTGAAAAGCCGCTTTCCCGGCCGTGCCGCCGAAATTGACCAAGCCC TGAAGTCTGCGTCTTCCACGGTCCGGGCCACCACCTCGGTGGGCTATGTCCCCCTGGCGAGTCGAAGCACTTTCTGGACC GTCCTCATCGATACCAACACCACGGAGGTGATTGCTTTTGTTCCCATCGATTCGTTCTAG
Upstream 100 bases:
>100_bases TCGACCATATGGGCCTGGCCTTGCGCGTCGAAGTGAGTCAGCGGAGAAGTCGTTGTCATCCTGTTACGAAACCTTTACAA CCATCCCTCATCATACGAGC
Downstream 100 bases:
>100_bases GACTTACCCATTGACGCTGGCAACCGTGGTTTTTATGGCCACGGCTGCCAGTTTGTCGCTGGCACAGGCACCGGGCGCGG CGACTGGCAGCTTGCCGTCT
Product: FimB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MLSRSSSWGHRLYASGIHLGLSLLVAGLAALLVFAVWYPYPYREISGGRSLFLLVITVDVIMGPLLTLAVFNRSKPLNEL RLDLAVIGLLQLAALAYGLWTVAVARPVHLVFEIDRFRVVHAIDVPPELLDRAPAELRHLPLAGPTQLSVREFKSAQESF ETTMAAIQGVALGARPDLWQSYEQAKPQIKARARPVSELKSRFPGRAAEIDQALKSASSTVRATTSVGYVPLASRSTFWT VLIDTNTTEVIAFVPIDSF
Sequences:
>Translated_259_residues MLSRSSSWGHRLYASGIHLGLSLLVAGLAALLVFAVWYPYPYREISGGRSLFLLVITVDVIMGPLLTLAVFNRSKPLNEL RLDLAVIGLLQLAALAYGLWTVAVARPVHLVFEIDRFRVVHAIDVPPELLDRAPAELRHLPLAGPTQLSVREFKSAQESF ETTMAAIQGVALGARPDLWQSYEQAKPQIKARARPVSELKSRFPGRAAEIDQALKSASSTVRATTSVGYVPLASRSTFWT VLIDTNTTEVIAFVPIDSF >Mature_259_residues MLSRSSSWGHRLYASGIHLGLSLLVAGLAALLVFAVWYPYPYREISGGRSLFLLVITVDVIMGPLLTLAVFNRSKPLNEL RLDLAVIGLLQLAALAYGLWTVAVARPVHLVFEIDRFRVVHAIDVPPELLDRAPAELRHLPLAGPTQLSVREFKSAQESF ETTMAAIQGVALGARPDLWQSYEQAKPQIKARARPVSELKSRFPGRAAEIDQALKSASSTVRATTSVGYVPLASRSTFWT VLIDTNTTEVIAFVPIDSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28403; Mature: 28403
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRSSSWGHRLYASGIHLGLSLLVAGLAALLVFAVWYPYPYREISGGRSLFLLVITVDV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH IMGPLLTLAVFNRSKPLNELRLDLAVIGLLQLAALAYGLWTVAVARPVHLVFEIDRFRVV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEE HAIDVPPELLDRAPAELRHLPLAGPTQLSVREFKSAQESFETTMAAIQGVALGARPDLWQ EEECCCHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH SYEQAKPQIKARARPVSELKSRFPGRAAEIDQALKSASSTVRATTSVGYVPLASRSTFWT HHHHHCCHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEHHCCCEEEECCCCEEEE VLIDTNTTEVIAFVPIDSF EEEECCCCEEEEEEECCCC >Mature Secondary Structure MLSRSSSWGHRLYASGIHLGLSLLVAGLAALLVFAVWYPYPYREISGGRSLFLLVITVDV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH IMGPLLTLAVFNRSKPLNELRLDLAVIGLLQLAALAYGLWTVAVARPVHLVFEIDRFRVV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEE HAIDVPPELLDRAPAELRHLPLAGPTQLSVREFKSAQESFETTMAAIQGVALGARPDLWQ EEECCCHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH SYEQAKPQIKARARPVSELKSRFPGRAAEIDQALKSASSTVRATTSVGYVPLASRSTFWT HHHHHCCHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEHHCCCEEEECCCCEEEE VLIDTNTTEVIAFVPIDSF EEEECCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1675418 [H]