| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790501
Identifier: 91790501
GI number: 91790501
Start: 4959557
End: 4961068
Strand: Reverse
Name: 91790501
Synonym: Bpro_4672
Alternate gene names: NA
Gene position: 4961068-4959557 (Counterclockwise)
Preceding gene: 91790502
Following gene: 91790499
Centisome position: 95.4
GC content: 63.29
Gene sequence:
>1512_bases GTGCACTTCATTGCTGTTTTTTTGCTCATAGCACTGCCTTGGCTCAATCCATTCGCCCCGGGGCCAACGCCTGCCGTCGT GCCGCTGCTGTTCTCGTGGGCTTGCGCTGCAGCTTTGCTTGGCGTATGCGCTCGTGTGCCCGGCCGGTTGTGGGTTGGGC GCTTGATGCCTGCCATCGCGTGGGCCTGGCTGAGTGCCGGACTGCTCAGCAGCGTGATTGGCTTGTGCCAGTACTTTGGT GCGGCCGGCAACTTTTCTCCCTGGATGAACCAGACTGAAATGGGAGAGGCGTTTGCCAATCTGCGTCAGCGCAATCAGTT CGCGACCTTGATCAATACGTCCCTGGCGGCCCTGCTTTGGCTCGGGGCGACTGGCCGCTTCATCGGGCGCGGCCAGTGGC TGGCGTTGGCCGCGGCGGGCCTCCTCGCGGCGGGTAATGCTGCTTCCTCGTCACGGACGGGGCTGCTGCAGATCGGTTTG CTGTGTTTGATGGTCTGGGTATGGCTAGGGTGGCGCCAGCCCGCTGTTCGCCGCGTGCTCTTGACGGCGGTGGTGGCCTA CGCGCTGGCAACGTTGGCGCTGCCCTGGCTGGCCGGGTTGGATCCGTCTGCGCACGGCATGTTCGCCCGCTTGCGTGCCG GGGACCAGATATGCAGCAGTCGCCTCACGCTCTGGTCTAACGTGCTGCACCTGATTGCCCAAAAGCCATGGCTGGGCTGG GGCTGGGGCGAACTCGACTATGCGCACTACAGCATACTTTACGATGGTCCCCGCTTTTGCGAGATCCTGGACAACGCGCA CAACCTGCCGCTGCACCTGGCGGTGGAGCTGGGCATTCCGGTGGCGTTGGCAGTATGTGGAGGCTTCGTCTGGTGGGTCT TCCGGCAACGGCCCTGGCGCGAGACCGACCCGACCCGCCAGATGGCGTGGGGTGTACTCGCCGTCATTCTTTTGCACAGC ATGCTGGAATACCCCCTATGGTACGGCCCGTTCCAGATGGCGTTTGGCCTGTCCCTGGGCCTGCTCTGGGGAAGCCGCAG GGCGCAGGCGAGCCCGCTGGAATCTCCGCCGGAGGAGTCACCCGTGTCTATTTTTCAAGCCTTGGCCGCTACTATTCTGA TAGCTATCGTGGGCTATGCCGGCTGGGACTATCACCGCATCAGTCAGATTTACCTGACGCCCGAAGATCGCGACGCGGCA TACCGGGACGATACCCTCCCCAAGATTCGCGGCTCCTGGCTGTTTCGCGACCAGGTGCGCTTTGCAGAACTGACCATCAC GCCGCTCACGCGTGACAATGCGCAATGGACCTTCGACACGGCGAGGGCGCTGCTGCACTACTCACCGGAGCCTCGCATCA TCGAAAAGGTGATTGAGAGCGCGGTCATGCTCGGCCGGGATGACGAGGCATTGATGCATCTGGCGCGCTATCGGGCGGCC TTTCCAGTGGAGCATGCGCGCTGGGCGCAAGAAGCTGCGGCGGCGCCGGAGCGTCTTCAGCACCTGAAGTGA
Upstream 100 bases:
>100_bases TCAGTGTGGCTTACACCACAATGAACAGACCCAAATGGCTATAAGGGGCTTGGTCCGTAACCCTTAACCGTAGCGCGTCG TTCGCTCACTCTTCTTACTT
Downstream 100 bases:
>100_bases CGCGGCTCAGGGGTTGACAAAGCTTCCCGATTTGCCGCCATGCTTTTCAAGCACGCGCACATCGGTCATGATCATCGCCC GGTCCGCCGCCTTGCACATG
Product: O-antigen polymerase
Products: NA
Alternate protein names: O-Antigen Polymerase Family
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MHFIAVFLLIALPWLNPFAPGPTPAVVPLLFSWACAAALLGVCARVPGRLWVGRLMPAIAWAWLSAGLLSSVIGLCQYFG AAGNFSPWMNQTEMGEAFANLRQRNQFATLINTSLAALLWLGATGRFIGRGQWLALAAAGLLAAGNAASSSRTGLLQIGL LCLMVWVWLGWRQPAVRRVLLTAVVAYALATLALPWLAGLDPSAHGMFARLRAGDQICSSRLTLWSNVLHLIAQKPWLGW GWGELDYAHYSILYDGPRFCEILDNAHNLPLHLAVELGIPVALAVCGGFVWWVFRQRPWRETDPTRQMAWGVLAVILLHS MLEYPLWYGPFQMAFGLSLGLLWGSRRAQASPLESPPEESPVSIFQALAATILIAIVGYAGWDYHRISQIYLTPEDRDAA YRDDTLPKIRGSWLFRDQVRFAELTITPLTRDNAQWTFDTARALLHYSPEPRIIEKVIESAVMLGRDDEALMHLARYRAA FPVEHARWAQEAAAAPERLQHLK
Sequences:
>Translated_503_residues MHFIAVFLLIALPWLNPFAPGPTPAVVPLLFSWACAAALLGVCARVPGRLWVGRLMPAIAWAWLSAGLLSSVIGLCQYFG AAGNFSPWMNQTEMGEAFANLRQRNQFATLINTSLAALLWLGATGRFIGRGQWLALAAAGLLAAGNAASSSRTGLLQIGL LCLMVWVWLGWRQPAVRRVLLTAVVAYALATLALPWLAGLDPSAHGMFARLRAGDQICSSRLTLWSNVLHLIAQKPWLGW GWGELDYAHYSILYDGPRFCEILDNAHNLPLHLAVELGIPVALAVCGGFVWWVFRQRPWRETDPTRQMAWGVLAVILLHS MLEYPLWYGPFQMAFGLSLGLLWGSRRAQASPLESPPEESPVSIFQALAATILIAIVGYAGWDYHRISQIYLTPEDRDAA YRDDTLPKIRGSWLFRDQVRFAELTITPLTRDNAQWTFDTARALLHYSPEPRIIEKVIESAVMLGRDDEALMHLARYRAA FPVEHARWAQEAAAAPERLQHLK >Mature_503_residues MHFIAVFLLIALPWLNPFAPGPTPAVVPLLFSWACAAALLGVCARVPGRLWVGRLMPAIAWAWLSAGLLSSVIGLCQYFG AAGNFSPWMNQTEMGEAFANLRQRNQFATLINTSLAALLWLGATGRFIGRGQWLALAAAGLLAAGNAASSSRTGLLQIGL LCLMVWVWLGWRQPAVRRVLLTAVVAYALATLALPWLAGLDPSAHGMFARLRAGDQICSSRLTLWSNVLHLIAQKPWLGW GWGELDYAHYSILYDGPRFCEILDNAHNLPLHLAVELGIPVALAVCGGFVWWVFRQRPWRETDPTRQMAWGVLAVILLHS MLEYPLWYGPFQMAFGLSLGLLWGSRRAQASPLESPPEESPVSIFQALAATILIAIVGYAGWDYHRISQIYLTPEDRDAA YRDDTLPKIRGSWLFRDQVRFAELTITPLTRDNAQWTFDTARALLHYSPEPRIIEKVIESAVMLGRDDEALMHLARYRAA FPVEHARWAQEAAAAPERLQHLK
Specific function: Unknown
COG id: COG3307
COG function: function code M; Lipid A core - O-antigen ligase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55916; Mature: 55916
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFIAVFLLIALPWLNPFAPGPTPAVVPLLFSWACAAALLGVCARVPGRLWVGRLMPAIA CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH WAWLSAGLLSSVIGLCQYFGAAGNFSPWMNQTEMGEAFANLRQRNQFATLINTSLAALLW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGATGRFIGRGQWLALAAAGLLAAGNAASSSRTGLLQIGLLCLMVWVWLGWRQPAVRRVL HCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH LTAVVAYALATLALPWLAGLDPSAHGMFARLRAGDQICSSRLTLWSNVLHLIAQKPWLGW HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GWGELDYAHYSILYDGPRFCEILDNAHNLPLHLAVELGIPVALAVCGGFVWWVFRQRPWR CCCCCCHHEEEEEECCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC ETDPTRQMAWGVLAVILLHSMLEYPLWYGPFQMAFGLSLGLLWGSRRAQASPLESPPEES CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC PVSIFQALAATILIAIVGYAGWDYHRISQIYLTPEDRDAAYRDDTLPKIRGSWLFRDQVR HHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCHHCCCEEECCCCE FAELTITPLTRDNAQWTFDTARALLHYSPEPRIIEKVIESAVMLGRDDEALMHLARYRAA EEEEEEEECCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH FPVEHARWAQEAAAAPERLQHLK CCHHHHHHHHHHHCCHHHHHCCC >Mature Secondary Structure MHFIAVFLLIALPWLNPFAPGPTPAVVPLLFSWACAAALLGVCARVPGRLWVGRLMPAIA CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH WAWLSAGLLSSVIGLCQYFGAAGNFSPWMNQTEMGEAFANLRQRNQFATLINTSLAALLW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGATGRFIGRGQWLALAAAGLLAAGNAASSSRTGLLQIGLLCLMVWVWLGWRQPAVRRVL HCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH LTAVVAYALATLALPWLAGLDPSAHGMFARLRAGDQICSSRLTLWSNVLHLIAQKPWLGW HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GWGELDYAHYSILYDGPRFCEILDNAHNLPLHLAVELGIPVALAVCGGFVWWVFRQRPWR CCCCCCHHEEEEEECCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC ETDPTRQMAWGVLAVILLHSMLEYPLWYGPFQMAFGLSLGLLWGSRRAQASPLESPPEES CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC PVSIFQALAATILIAIVGYAGWDYHRISQIYLTPEDRDAAYRDDTLPKIRGSWLFRDQVR HHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCHHCCCEEECCCCE FAELTITPLTRDNAQWTFDTARALLHYSPEPRIIEKVIESAVMLGRDDEALMHLARYRAA EEEEEEEECCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH FPVEHARWAQEAAAAPERLQHLK CCHHHHHHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA