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The map label for this gene is ykfC [H]

Identifier: 91790430

GI number: 91790430

Start: 4879178

End: 4880935

Strand: Reverse

Name: ykfC [H]

Synonym: Bpro_4601

Alternate gene names: 91790430

Gene position: 4880935-4879178 (Counterclockwise)

Preceding gene: 91790433

Following gene: 91790429

Centisome position: 93.86

GC content: 53.41

Gene sequence:

>1758_bases
ATGGAACACATCCGAAAGGATGCTGCGTCTCCGGGCGAATCAAGTGAATGGCACTCCATCGATTGGAAAGCCGTCATGCA
ATTCGTAGGAAAGGCGCAGATGCGCATAGCGCAGGCAGAAGCAGAAAAGGACTTCCGACGAGTCGCAAGACTCGGAAGGG
GTTTGATTCGATCCTGGCAAGCCAAGGCATTGGCCGTCAGGAGAGTAACGGAAAACCAAGGGAAGCGAACGAGTGGCGTC
GATTACGTACTTTGGGACACGCCAACAAAGAAATGGAATGCGATAGGTTGTCTGAACCCCAAAGGGTATCGGGCTCGCCC
CCTAAGGCGGGTCTATATCCCGAAGGCCGGCGGAAAGGAACGCCCCCTGGGCATGCCGACTATGAAGGACAGAGCGATGC
AAGCACTTTATCTGCTTGCGCTGGAACCGGCTGTGGAATGTGCGTCTGACCCGAACAGCTACGGCTTTCGGAAAGGGCGA
TCAACACATGATGCGCGGAGCCAGCTGTTCGTAACACTATCCCAAAAGGCTTCGGCCCAATGGGTATTGGATGCGGACAT
CTCTGGGTTCTTTGACAACATCAACCACGAGTGGCTGCTGAACCACGTCCACATGGACAAGGTGATGCTGCGCAAGTGGT
TGAAATCTGGAGTCGTTGACGCGGGTCAGCTCCAGCGCACGGATGACGGTACGCCGCAGGGCGGGGTCATCTCGCCGGCG
TTAGCGAACATCACCCTGAATGGTTTGGAAACGGGGCTCACGCAATTCCTCCGGGAAAAGTTGGGCGTCAAGCAGGCAGA
AAAGGTGAAGGTGAACTTGGTAAGGTACGCAGATGACTTCGTGATAACGGGTAGTTCAAAAGACTTCCTTGAGACGACCG
TCCGACCTTGGATTGTTGAATTCCTGCGCGAGCGGGGGTTGACACTGAACCAGGAAAAGACGCGCATTGTGCACATTGAC
CAAGGTTTTGATTTTCTGGGGTGGAACTTCCGTAAATACGGGGGCAAGCTACTCATCAAACCGAGCCAGAAAAACGTGAA
AGCGTTCTATGCCAAGGTAAAAAAGGAAATCGTTGAATCGCTATCGAAGGTTCCGGTAGAAACGTTGATAAAGCGCCTGA
ACCCAATCCTCAAAGGTTGGGCTCAGTACCACAAGGGCACGGTTGCAAAACAGACTTTCAGCAAAATGGATTTTCTGATT
TATTGGAGACTGATGCGCTGGGGCTTGCGAACGCATCCGCGCAAGACGGCGGGCTGGGTGTACGGCCATTACTGGAAACA
GTGTGGTTCACGCAAACAATTCGCGGGATTGCAGGATGACCCGTCCGGAAGTGATGAAAGGATACCGCTGCCGCTGTATC
TCCTGTCGGACATGAAAATTGTCCGGCACATCAAGGTCAAGGGGGATTACAACCCCTTCCACCCGGACTGGGTTGCCTAC
GGAGAGAAACTGCGAGTACGAAGGATGGGTGAAATCATCTGGAGCGCTCAAAGGGCCTCTCTGTGGTTCGACCAAGGTGG
TAAATGCGCTCTCTGTCAGCAAGAAATCGACTTGGCTGATGAAAACATGGACGATCACCATATCGTCTATAGGCAGTTTG
GAGGGAGTGATGCTCTCTCCAACCGGGTGCTGTTACATCCGGTATGTCACAGGCGTGTCCACGCCCTAGGTTTGAAGGTT
ATCAAGCCGGTCCCCGGTACGGGGGACTTTAATCTGGCGAAGCAGTCGAAGGTTATGCAACCTGTTGAAGCTGTGTAG

Upstream 100 bases:

>100_bases
GCGACAGCGTAAAGCCGTTGCGACTTGTCAACGACCCAGAGGGTATCTGACCCTCTGGGTCAGTGCCTTCTTCAATGGGT
CAACCTCACTGGAGAATGGT

Downstream 100 bases:

>100_bases
TCAGTGGTCGTACGTGAGCCGTGTGCGGTGAAAGTCGCAAGCTCGGTTCGATGGGGGGGATATCATCGAGAGATGGTATC
CCTACCCTCCAACCTGGCCC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MEHIRKDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAEAEKDFRRVARLGRGLIRSWQAKALAVRRVTENQGKRTSGV
DYVLWDTPTKKWNAIGCLNPKGYRARPLRRVYIPKAGGKERPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVTLSQKASAQWVLDADISGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
LANITLNGLETGLTQFLREKLGVKQAEKVKVNLVRYADDFVITGSSKDFLETTVRPWIVEFLRERGLTLNQEKTRIVHID
QGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKKEIVESLSKVPVETLIKRLNPILKGWAQYHKGTVAKQTFSKMDFLI
YWRLMRWGLRTHPRKTAGWVYGHYWKQCGSRKQFAGLQDDPSGSDERIPLPLYLLSDMKIVRHIKVKGDYNPFHPDWVAY
GEKLRVRRMGEIIWSAQRASLWFDQGGKCALCQQEIDLADENMDDHHIVYRQFGGSDALSNRVLLHPVCHRRVHALGLKV
IKPVPGTGDFNLAKQSKVMQPVEAV

Sequences:

>Translated_585_residues
MEHIRKDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAEAEKDFRRVARLGRGLIRSWQAKALAVRRVTENQGKRTSGV
DYVLWDTPTKKWNAIGCLNPKGYRARPLRRVYIPKAGGKERPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVTLSQKASAQWVLDADISGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
LANITLNGLETGLTQFLREKLGVKQAEKVKVNLVRYADDFVITGSSKDFLETTVRPWIVEFLRERGLTLNQEKTRIVHID
QGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKKEIVESLSKVPVETLIKRLNPILKGWAQYHKGTVAKQTFSKMDFLI
YWRLMRWGLRTHPRKTAGWVYGHYWKQCGSRKQFAGLQDDPSGSDERIPLPLYLLSDMKIVRHIKVKGDYNPFHPDWVAY
GEKLRVRRMGEIIWSAQRASLWFDQGGKCALCQQEIDLADENMDDHHIVYRQFGGSDALSNRVLLHPVCHRRVHALGLKV
IKPVPGTGDFNLAKQSKVMQPVEAV
>Mature_585_residues
MEHIRKDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAEAEKDFRRVARLGRGLIRSWQAKALAVRRVTENQGKRTSGV
DYVLWDTPTKKWNAIGCLNPKGYRARPLRRVYIPKAGGKERPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVTLSQKASAQWVLDADISGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
LANITLNGLETGLTQFLREKLGVKQAEKVKVNLVRYADDFVITGSSKDFLETTVRPWIVEFLRERGLTLNQEKTRIVHID
QGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKKEIVESLSKVPVETLIKRLNPILKGWAQYHKGTVAKQTFSKMDFLI
YWRLMRWGLRTHPRKTAGWVYGHYWKQCGSRKQFAGLQDDPSGSDERIPLPLYLLSDMKIVRHIKVKGDYNPFHPDWVAY
GEKLRVRRMGEIIWSAQRASLWFDQGGKCALCQQEIDLADENMDDHHIVYRQFGGSDALSNRVLLHPVCHRRVHALGLKV
IKPVPGTGDFNLAKQSKVMQPVEAV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=326, Percent_Identity=26.3803680981595, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6226520, Length=329, Percent_Identity=24.6200607902736, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 66739; Mature: 66739

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHIRKDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAEAEKDFRRVARLGRGLIRSWQ
CCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKALAVRRVTENQGKRTSGVDYVLWDTPTKKWNAIGCLNPKGYRARPLRRVYIPKAGGKE
HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCC
RPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGRSTHDARSQLFVTLSQKASAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCE
WVLDADISGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
EEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
LANITLNGLETGLTQFLREKLGVKQAEKVKVNLVRYADDFVITGSSKDFLETTVRPWIVE
HHHEEHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCEEEECCCHHHHHHHHHHHHHH
FLRERGLTLNQEKTRIVHIDQGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKKEIVES
HHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHH
LSKVPVETLIKRLNPILKGWAQYHKGTVAKQTFSKMDFLIYWRLMRWGLRTHPRKTAGWV
HHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCHH
YGHYWKQCGSRKQFAGLQDDPSGSDERIPLPLYLLSDMKIVRHIKVKGDYNPFHPDWVAY
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEHEEEEECCCCCCCCHHHHH
GEKLRVRRMGEIIWSAQRASLWFDQGGKCALCQQEIDLADENMDDHHIVYRQFGGSDALS
HHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHCCCCCCCCEEEEEECCCCHHHC
NRVLLHPVCHRRVHALGLKVIKPVPGTGDFNLAKQSKVMQPVEAV
CCEEECHHHHHHHHHHCHHHCCCCCCCCCCCHHHHHHHCCHHHCC
>Mature Secondary Structure
MEHIRKDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAEAEKDFRRVARLGRGLIRSWQ
CCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKALAVRRVTENQGKRTSGVDYVLWDTPTKKWNAIGCLNPKGYRARPLRRVYIPKAGGKE
HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCC
RPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGRSTHDARSQLFVTLSQKASAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCE
WVLDADISGFFDNINHEWLLNHVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPA
EEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
LANITLNGLETGLTQFLREKLGVKQAEKVKVNLVRYADDFVITGSSKDFLETTVRPWIVE
HHHEEHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCEEEECCCHHHHHHHHHHHHHH
FLRERGLTLNQEKTRIVHIDQGFDFLGWNFRKYGGKLLIKPSQKNVKAFYAKVKKEIVES
HHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHHHHH
LSKVPVETLIKRLNPILKGWAQYHKGTVAKQTFSKMDFLIYWRLMRWGLRTHPRKTAGWV
HHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCHH
YGHYWKQCGSRKQFAGLQDDPSGSDERIPLPLYLLSDMKIVRHIKVKGDYNPFHPDWVAY
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEHEEEEECCCCCCCCHHHHH
GEKLRVRRMGEIIWSAQRASLWFDQGGKCALCQQEIDLADENMDDHHIVYRQFGGSDALS
HHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHCCCCCCCCEEEEEECCCCHHHC
NRVLLHPVCHRRVHALGLKVIKPVPGTGDFNLAKQSKVMQPVEAV
CCEEECHHHHHHHHHHCHHHCCCCCCCCCCCHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]