| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790150
Identifier: 91790150
GI number: 91790150
Start: 4546154
End: 4546990
Strand: Reverse
Name: 91790150
Synonym: Bpro_4313
Alternate gene names: NA
Gene position: 4546990-4546154 (Counterclockwise)
Preceding gene: 91790151
Following gene: 91790149
Centisome position: 87.44
GC content: 71.21
Gene sequence:
>837_bases ATGCCTTCTTTCTCGAAGCGCCGCGAGGATCCCTCCCGTCGGCGCCTGCTGGCAGCTGTGCTCGCCGTTGCAGTGTCCCT CAGCGGCTGCGCAGCAGTGCCAGCGCCGACCGAGCCCACGGCGGCGGCGCGCGCAGCGCTTGCGCCCACCGGTACGCTGC GTGTTGCGGTTTATCCGGGCAGTCCCACGTCCCTGGTCGAACAGGCGCCGCCAGCGAGCATGCGGGGTGTCAGCGTCGAT CTCGGCCGCTCGCTGGCAGTCAGGCTCGGCGTGCCCGTGCAAATCGCCGTCTACCCGCGCCTGGCGGAGGCTTTGGCTGC GCTGCAGCGCGGCGATGCGGATTTCACGATCACCAACGCCACGGCTGAACGTGCGCGCATGGTGGATTTCGCGCCGACAC TCGTGGACCTCGAACTCGGCGTGCTGGTGCCGTCCACGTCGCGCGTCACGGCGGTCGAGCGGCTGGACCAGCCAGGTGTC ACAGTCGGCGTCAGCCAGGGCAGCTCCTCCGAGCGGGTGCTCGGCGCCCGCCTGACGCAGGCCAGGCTGCGTAGCTTCCC GACGCTGGATGCCGCGCGTGCGGCGCTTCAGGCCCAAGAGGTCGATGCGTACGCGACCAACAAGGGCATTCTGTTCGAGC TGGCGGAGCGGGTGCCAGGTGCGCGCGTGCTGGAGGGCCGCTGGGGCACGGAGCATCTCGCGCCGGCCATCCCCAAGGGC CGCGACGCCGGCATGCCTTACCTGCGGGCCTTTACGGAGCAAGTCCGCGGCAACGGCGAACTCGAACGCGCGGCCATGCG CGCGGGGCAGCGCGGCACAGTGCCGCCCGCACGGTAG
Upstream 100 bases:
>100_bases GGCGCAGTTCACGAAGCTGTTGCAGGACGAAAGCGCGCGCTACGCCAGGCTGATCCGCGAAGCGCAGATCAAGCCGGACT GAGCGATGCGGAGTTTCACC
Downstream 100 bases:
>100_bases CCGCGAGCTCAGGGCCGCGCCACGGCACCGCCTGCCAGATTCACCAAGGGCTCCGCGCGCTCCTCGTTGCCGTCGGAAAA GCCGGCGCTGTGGGGTGTGA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MPSFSKRREDPSRRRLLAAVLAVAVSLSGCAAVPAPTEPTAAARAALAPTGTLRVAVYPGSPTSLVEQAPPASMRGVSVD LGRSLAVRLGVPVQIAVYPRLAEALAALQRGDADFTITNATAERARMVDFAPTLVDLELGVLVPSTSRVTAVERLDQPGV TVGVSQGSSSERVLGARLTQARLRSFPTLDAARAALQAQEVDAYATNKGILFELAERVPGARVLEGRWGTEHLAPAIPKG RDAGMPYLRAFTEQVRGNGELERAAMRAGQRGTVPPAR
Sequences:
>Translated_278_residues MPSFSKRREDPSRRRLLAAVLAVAVSLSGCAAVPAPTEPTAAARAALAPTGTLRVAVYPGSPTSLVEQAPPASMRGVSVD LGRSLAVRLGVPVQIAVYPRLAEALAALQRGDADFTITNATAERARMVDFAPTLVDLELGVLVPSTSRVTAVERLDQPGV TVGVSQGSSSERVLGARLTQARLRSFPTLDAARAALQAQEVDAYATNKGILFELAERVPGARVLEGRWGTEHLAPAIPKG RDAGMPYLRAFTEQVRGNGELERAAMRAGQRGTVPPAR >Mature_277_residues PSFSKRREDPSRRRLLAAVLAVAVSLSGCAAVPAPTEPTAAARAALAPTGTLRVAVYPGSPTSLVEQAPPASMRGVSVDL GRSLAVRLGVPVQIAVYPRLAEALAALQRGDADFTITNATAERARMVDFAPTLVDLELGVLVPSTSRVTAVERLDQPGVT VGVSQGSSSERVLGARLTQARLRSFPTLDAARAALQAQEVDAYATNKGILFELAERVPGARVLEGRWGTEHLAPAIPKGR DAGMPYLRAFTEQVRGNGELERAAMRAGQRGTVPPAR
Specific function: Unknown
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29246; Mature: 29115
Theoretical pI: Translated: 10.93; Mature: 10.93
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSFSKRREDPSRRRLLAAVLAVAVSLSGCAAVPAPTEPTAAARAALAPTGTLRVAVYPG CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECC SPTSLVEQAPPASMRGVSVDLGRSLAVRLGVPVQIAVYPRLAEALAALQRGDADFTITNA CCHHHHHCCCCCCCCCCEEECCCCEEEEECCCEEEEEHHHHHHHHHHHHCCCCCEEEECC TAERARMVDFAPTLVDLELGVLVPSTSRVTAVERLDQPGVTVGVSQGSSSERVLGARLTQ HHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH ARLRSFPTLDAARAALQAQEVDAYATNKGILFELAERVPGARVLEGRWGTEHLAPAIPKG HHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCHHHCCCCCCC RDAGMPYLRAFTEQVRGNGELERAAMRAGQRGTVPPAR CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PSFSKRREDPSRRRLLAAVLAVAVSLSGCAAVPAPTEPTAAARAALAPTGTLRVAVYPG CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECC SPTSLVEQAPPASMRGVSVDLGRSLAVRLGVPVQIAVYPRLAEALAALQRGDADFTITNA CCHHHHHCCCCCCCCCCEEECCCCEEEEECCCEEEEEHHHHHHHHHHHHCCCCCEEEECC TAERARMVDFAPTLVDLELGVLVPSTSRVTAVERLDQPGVTVGVSQGSSSERVLGARLTQ HHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH ARLRSFPTLDAARAALQAQEVDAYATNKGILFELAERVPGARVLEGRWGTEHLAPAIPKG HHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCHHHCCCCCCC RDAGMPYLRAFTEQVRGNGELERAAMRAGQRGTVPPAR CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA