| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790140
Identifier: 91790140
GI number: 91790140
Start: 4535510
End: 4536427
Strand: Reverse
Name: 91790140
Synonym: Bpro_4302
Alternate gene names: NA
Gene position: 4536427-4535510 (Counterclockwise)
Preceding gene: 91790141
Following gene: 91790139
Centisome position: 87.23
GC content: 64.49
Gene sequence:
>918_bases ATGAGTGATTTCACCGGCAATTTCTGGTCGCTGTATGTGGCGGCGCTGACCCTGTTGGGTATCGTGGCCTGCCTGGTCCT GCTGTGGGTGACTGCGCGCAAGCGGATTGTCTCCAGCGCCGACAACACCACCGGCCATGTGTGGGACGGCGATTTGCGCG AAATGAACAACCCCATGCCGCGCTGGTGGGTGTGGCTGTTCGTGCTGACCATTGTGTTTTCCCTGGCGTACCTGGTGGCC TATCCCGGCCTGGGCGCTTATCAGGGTCAGCTCGGCTGGAGCACCCGGGGCGAGTACGCCGTCGAAGTAGAGCGCGCCAA CAAGGAGCTTGGCCCCCTGTATTCTCAGTTCACCGCCAAGCCCACCGAGGAACTGGCCGGTGATGCCAATGCCATGGCGG TGGGCGAGCGCCTCTTTATGAACAACTGTGCCCAGTGCCACGGCTCCGACGCACGCGGCAGCAAGGGCTTTCCCAATCTG ACCGACGCCGACTGGCTGCATGGCGGTACGCCGGACAAGATCACCGAAACGCTGACGCGCGGCCGGCAGGGCCAGATGCC GCCGATGGCGGCAGCGGTGGGCACGCCCGACGATGTGAAGAATCTCGCCAACTATGTGTTGAGCCTGTCGGGCAGCCCGC ACGACTCCGTGCGCGGGGCCCTGGGCAAGAGCAAGTTCGGCGCCTGCGCCGCGTGCCACGGCGTGGATGGCAAGGGCAAC CCGGCCCTGGGCGCGCCCAACCTCGCCGATGACGTCTGGCTGCACGGATGGGGCGAGCAGGCCATCATCAACATGATCAA CAAGGGCAAGACCAGCGAGATGCCGGCCCAGCTCGGCAAGCTGACTGAAGCGCAGCTTCATGTGCTGACGGCTTACATCT GGGGCATGTCCAACAAGCCCCTTCCGGCCAAACCCTGA
Upstream 100 bases:
>100_bases CTGGGCATTGTCTGGTGGGCGTATTCACGGGGCAACCGCGAGCGTTTCGACGAAGCGGCGCGCCTGCCATTTGAACAAGA CTGACTCCGGGAGTTTTTAG
Downstream 100 bases:
>100_bases AGAGACCCTGAAAAGATCCTGAAGAGAAAGTTTCGCTTGCAATCTTCCACACGTCGCAAAGTCATACCCATCGTGCCCGA AGCGGCGCATGGGCAGACGG
Product: cbb3-type cytochrome c oxidase subunit III
Products: ferricytochrome c; H2O
Alternate protein names: Cytochrome C Class I; Cbb3-Type Cytochrome C Oxidase Subunit III; Cb-Type Cytochrome C Oxidase Subunit III; Cytochrome-C Oxidase FixP Chain; Cytochrome C Oxidase Subunit CcoP; Cytochrome C; Cytochrome-Cbb3 Oxidase Subunit III; Cytochrome C Oxidase Subunit; Cytochrome C Oxidase; Cytochrome C Oxidase Subunit III; Cytochrome-C Oxidase Subunit III; Cytochrome C Mono- And Diheme Variant; Cytochrome C Subfamily; Cytochrome C Oxidase CcoP Subunit; FixP2 Diheme C-Type Cytochrome; Class I Cytochrome C; Cytochrome C Mono- And Diheme Variants; FixP Protein; Cytochrome Oxidase Component Cytochrome C Protein; Cytochrome C Oxidase Cbb3-Type Di-Heme Subunit III; Cytochrome C Oxidase Diheme Subunit; FixP3 Cytochrome C Oxidase Membrane Anchored Subunit; Gluconate 2-Dehydrogenase; Cytochrome Cbb3 Oxidase Diheme Subunit Membrane-Bound CcoP; Cbb3-Type Cytochrome C Oxidase Subunit CcoP; Membrane-Anchored Cbb3 Cytochrome Oxidase Subunit; Cytochrome C Oxidase Transmembrane Protein; Cytochrome C Oxidase Diheme Subunit Membrane-Bound; Cytochrome C Oxidase Protein FixP Chain; Cbb3 Oxidase Subunit III; Cytochrome C Oxidase FixP Chain Protein; Diheme Cytochrome C
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MSDFTGNFWSLYVAALTLLGIVACLVLLWVTARKRIVSSADNTTGHVWDGDLREMNNPMPRWWVWLFVLTIVFSLAYLVA YPGLGAYQGQLGWSTRGEYAVEVERANKELGPLYSQFTAKPTEELAGDANAMAVGERLFMNNCAQCHGSDARGSKGFPNL TDADWLHGGTPDKITETLTRGRQGQMPPMAAAVGTPDDVKNLANYVLSLSGSPHDSVRGALGKSKFGACAACHGVDGKGN PALGAPNLADDVWLHGWGEQAIINMINKGKTSEMPAQLGKLTEAQLHVLTAYIWGMSNKPLPAKP
Sequences:
>Translated_305_residues MSDFTGNFWSLYVAALTLLGIVACLVLLWVTARKRIVSSADNTTGHVWDGDLREMNNPMPRWWVWLFVLTIVFSLAYLVA YPGLGAYQGQLGWSTRGEYAVEVERANKELGPLYSQFTAKPTEELAGDANAMAVGERLFMNNCAQCHGSDARGSKGFPNL TDADWLHGGTPDKITETLTRGRQGQMPPMAAAVGTPDDVKNLANYVLSLSGSPHDSVRGALGKSKFGACAACHGVDGKGN PALGAPNLADDVWLHGWGEQAIINMINKGKTSEMPAQLGKLTEAQLHVLTAYIWGMSNKPLPAKP >Mature_304_residues SDFTGNFWSLYVAALTLLGIVACLVLLWVTARKRIVSSADNTTGHVWDGDLREMNNPMPRWWVWLFVLTIVFSLAYLVAY PGLGAYQGQLGWSTRGEYAVEVERANKELGPLYSQFTAKPTEELAGDANAMAVGERLFMNNCAQCHGSDARGSKGFPNLT DADWLHGGTPDKITETLTRGRQGQMPPMAAAVGTPDDVKNLANYVLSLSGSPHDSVRGALGKSKFGACAACHGVDGKGNP ALGAPNLADDVWLHGWGEQAIINMINKGKTSEMPAQLGKLTEAQLHVLTAYIWGMSNKPLPAKP
Specific function: Unknown
COG id: COG2010
COG function: function code C; Cytochrome c, mono- and diheme variants
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.9.3.1
Molecular weight: Translated: 32890; Mature: 32759
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFTGNFWSLYVAALTLLGIVACLVLLWVTARKRIVSSADNTTGHVWDGDLREMNNPMP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCH RWWVWLFVLTIVFSLAYLVAYPGLGAYQGQLGWSTRGEYAVEVERANKELGPLYSQFTAK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHCCC PTEELAGDANAMAVGERLFMNNCAQCHGSDARGSKGFPNLTDADWLHGGTPDKITETLTR CHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC GRQGQMPPMAAAVGTPDDVKNLANYVLSLSGSPHDSVRGALGKSKFGACAACHGVDGKGN CCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCC PALGAPNLADDVWLHGWGEQAIINMINKGKTSEMPAQLGKLTEAQLHVLTAYIWGMSNKP CCCCCCCCCHHHEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LPAKP CCCCC >Mature Secondary Structure SDFTGNFWSLYVAALTLLGIVACLVLLWVTARKRIVSSADNTTGHVWDGDLREMNNPMP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCH RWWVWLFVLTIVFSLAYLVAYPGLGAYQGQLGWSTRGEYAVEVERANKELGPLYSQFTAK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHCCC PTEELAGDANAMAVGERLFMNNCAQCHGSDARGSKGFPNLTDADWLHGGTPDKITETLTR CHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC GRQGQMPPMAAAVGTPDDVKNLANYVLSLSGSPHDSVRGALGKSKFGACAACHGVDGKGN CCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCC PALGAPNLADDVWLHGWGEQAIINMINKGKTSEMPAQLGKLTEAQLHVLTAYIWGMSNKP CCCCCCCCCHHHEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LPAKP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ferrocytochrome c; O2
Specific reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA